Wall clock time and date at job start Mon Mar 30 2020 00:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38162 * 120.02460 * 2 1 4 4 C 1.38247 * 120.05352 * 179.97438 * 3 2 1 5 5 C 1.38285 * 120.11130 * 0.27883 * 4 3 2 6 6 C 1.38123 * 120.05549 * 359.44969 * 5 4 3 7 7 C 1.50702 * 120.03154 * 180.27933 * 6 5 4 8 8 N 1.46901 * 109.46827 * 260.27134 * 7 6 5 9 9 C 1.46897 * 110.99585 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47553 * 324.99417 * 9 8 7 11 11 C 1.52999 * 109.47241 * 84.99945 * 9 8 7 12 12 C 1.53001 * 109.47234 * 204.99714 * 9 8 7 13 13 C 1.53004 * 109.47037 * 64.99923 * 12 9 8 14 14 C 1.50696 * 109.47338 * 180.02562 * 13 12 9 15 15 H 1.08005 * 120.00229 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00158 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99680 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47476 * 89.99918 * 18 16 14 20 20 H 1.48502 * 109.47125 * 210.00260 * 18 16 14 21 21 H 1.48504 * 109.46963 * 329.99645 * 18 16 14 22 22 C 1.38706 * 120.02810 * 179.97438 * 2 1 3 23 23 O 1.35905 * 120.05552 * 359.97438 * 22 2 1 24 24 H 1.08993 * 109.47457 * 89.99807 * 1 2 3 25 25 H 1.09002 * 109.46629 * 209.99600 * 1 2 3 26 26 H 1.08999 * 109.47307 * 329.99322 * 1 2 3 27 27 H 1.07998 * 119.97579 * 359.95925 * 3 2 1 28 28 H 1.08002 * 119.94131 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.97313 * 179.71674 * 5 4 3 30 30 H 1.09003 * 109.46937 * 20.26792 * 7 6 5 31 31 H 1.08999 * 109.47324 * 140.26617 * 7 6 5 32 32 H 1.00893 * 111.00134 * 56.04186 * 8 7 6 33 33 H 1.09003 * 109.47236 * 179.97438 * 11 9 8 34 34 H 1.08999 * 109.47345 * 299.99672 * 11 9 8 35 35 H 1.08998 * 109.47052 * 60.00055 * 11 9 8 36 36 H 1.08994 * 109.47812 * 185.00050 * 12 9 8 37 37 H 1.09005 * 109.47035 * 305.00312 * 12 9 8 38 38 H 1.09000 * 109.47350 * 300.00768 * 13 12 9 39 39 H 1.09005 * 109.46890 * 60.00300 * 13 12 9 40 40 H 0.96998 * 119.99063 * 179.97438 * 17 16 14 41 41 H 0.96704 * 113.99927 * 89.99951 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 -0.0047 6 6 3.5887 -1.1975 0.0009 7 6 4.3460 -2.5004 0.0015 8 7 4.3847 -3.0449 -1.3623 9 6 5.1172 -4.3176 -1.4004 10 1 5.9377 -4.2863 -0.6835 11 6 4.1688 -5.4630 -1.0405 12 6 5.6771 -4.5419 -2.8065 13 6 6.7190 -3.4657 -3.1183 14 6 7.2700 -3.6862 -4.5035 15 1 6.9126 -4.5112 -5.1019 16 6 8.2305 -2.8348 -5.0070 17 7 8.6654 -1.8298 -4.2786 18 14 8.9130 -3.1077 -6.7243 19 1 8.0898 -2.3605 -7.7087 20 1 10.3155 -2.6231 -6.7824 21 1 8.8764 -4.5568 -7.0469 22 6 2.2012 -1.2009 0.0005 23 8 1.5234 -2.3788 0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6584 2.1315 -0.0007 28 1 4.1194 2.1331 0.0001 29 1 5.3552 0.0042 -0.0089 30 1 5.3634 -2.3292 0.3533 31 1 3.8478 -3.2100 0.6621 32 1 4.7839 -2.3788 -2.0064 33 1 4.7123 -6.4074 -1.0692 34 1 3.7699 -5.3032 -0.0387 35 1 3.3485 -5.4943 -1.7575 36 1 6.1438 -5.5255 -2.8593 37 1 4.8669 -4.4848 -3.5336 38 1 6.2523 -2.4821 -3.0656 39 1 7.5291 -3.5229 -2.3913 40 1 9.3414 -1.2311 -4.6327 41 1 1.3269 -2.7203 -0.8815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:48 Heat of formation + Delta-G solvation = -63.973214 kcal Electronic energy + Delta-G solvation = -19675.304248 eV Core-core repulsion = 16746.282533 eV Total energy + Delta-G solvation = -2929.021715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96776 -38.54763 -37.42392 -35.47882 -34.33981 -32.62564 -31.24918 -30.02476 -27.67699 -27.16683 -25.85671 -23.25643 -22.78016 -21.66657 -21.04296 -19.09960 -18.53753 -17.22816 -16.83484 -16.62663 -16.50414 -16.23219 -15.49341 -15.01387 -14.53852 -14.45144 -14.24569 -14.10848 -13.88869 -13.68147 -13.16583 -13.14995 -12.97554 -12.93766 -12.83457 -12.60641 -12.52333 -12.34434 -12.05910 -11.88436 -11.58776 -11.35607 -11.15936 -10.96086 -10.55395 -9.65361 -9.40374 -9.34522 -8.20917 -6.31502 0.33631 0.36829 1.39344 1.40228 1.51311 2.40250 2.64522 3.12277 3.35446 3.49286 3.78498 3.91026 4.07453 4.10766 4.33588 4.35623 4.45669 4.50335 4.56411 4.63444 4.78484 4.81376 4.84117 4.93590 5.00914 5.04147 5.07190 5.09155 5.21494 5.31917 5.44683 5.51586 5.52677 5.54783 5.63307 5.69066 5.83467 5.96440 6.18148 6.24832 6.38985 6.84986 6.90638 7.37758 8.90496 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.004494 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.979428 B = 6229.643073 C = 7036.560153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.131 4.131 5 C -0.122 4.122 6 C -0.119 4.119 7 C 0.108 3.892 8 N -0.674 5.674 9 C 0.086 3.914 10 H 0.025 0.975 11 C -0.125 4.125 12 C -0.100 4.100 13 C 0.027 3.973 14 C -0.543 4.543 15 H 0.058 0.942 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.962 3.038 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.116 3.884 23 O -0.497 6.497 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.023 0.977 31 H 0.084 0.916 32 H 0.336 0.664 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.057 0.943 38 H -0.003 1.003 39 H -0.018 1.018 40 H 0.263 0.737 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.274 3.165 9.318 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.127 4.127 4 C -0.149 4.149 5 C -0.141 4.141 6 C -0.120 4.120 7 C -0.020 4.020 8 N -0.307 5.307 9 C -0.023 4.023 10 H 0.043 0.957 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.010 4.010 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.188 1.188 22 C 0.070 3.930 23 O -0.309 6.309 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.169 0.831 28 H 0.160 0.840 29 H 0.135 0.865 30 H 0.041 0.959 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.016 0.984 39 H 0.000 1.000 40 H 0.071 0.929 41 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -15.744 3.020 9.974 18.880 hybrid contribution 1.929 0.331 -1.198 2.295 sum -13.815 3.351 8.776 16.706 Atomic orbital electron populations 1.20680 0.88930 1.03565 1.02990 1.20551 0.98092 0.92284 1.01653 1.21263 0.93956 0.98052 0.99471 1.21372 0.94892 0.98131 1.00470 1.21168 1.00080 0.92455 1.00388 1.20220 0.93930 0.95121 1.02746 1.20718 0.96716 0.93177 0.91428 1.60722 1.57395 1.05871 1.06668 1.21562 0.93968 0.90674 0.96120 0.95708 1.21680 0.99046 0.96146 1.01397 1.21637 0.97849 0.99046 0.95278 1.18998 0.93101 0.94021 0.94850 1.21691 1.22106 1.12649 1.01647 0.92327 1.25943 0.96907 0.94815 1.01943 1.70093 1.30936 1.17155 1.38993 0.85485 0.77480 0.78856 0.79468 1.19761 1.20818 1.18810 1.18171 0.88811 0.85763 1.00231 1.84630 1.75800 1.35743 1.34707 0.90467 0.91310 0.90047 0.83125 0.84008 0.86516 0.95893 0.89727 0.84439 0.92024 0.92476 0.91919 0.92411 0.92435 0.98432 0.99953 0.92862 0.73982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.79 71.24 0.70 -1.06 16 2 C -0.13 -2.87 5.89 -19.77 -0.12 -2.98 16 3 C -0.11 -2.33 9.70 22.25 0.22 -2.11 16 4 C -0.13 -3.12 10.04 22.28 0.22 -2.89 16 5 C -0.12 -3.50 9.67 22.25 0.22 -3.29 16 6 C -0.12 -3.53 5.41 -19.77 -0.11 -3.63 16 7 C 0.11 3.36 5.27 85.56 0.45 3.82 16 8 N -0.67 -22.73 6.30 -495.58 -3.12 -25.85 16 9 C 0.09 2.98 2.65 44.92 0.12 3.10 16 10 H 0.02 0.92 7.80 -2.39 -0.02 0.90 16 11 C -0.12 -3.44 9.41 71.98 0.68 -2.77 16 12 C -0.10 -4.13 4.74 30.60 0.15 -3.98 16 13 C 0.03 1.44 4.80 29.85 0.14 1.59 16 14 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 15 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 16 C 0.00 0.10 5.46 84.66 0.46 0.56 16 17 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 18 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 C 0.12 3.09 6.65 22.51 0.15 3.24 16 23 O -0.50 -12.20 11.78 -92.48 -1.09 -13.29 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.20 7.53 -2.39 -0.02 1.18 16 26 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 27 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 28 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.12 3.41 8.04 -2.91 -0.02 3.39 16 30 H 0.02 0.76 7.92 -2.39 -0.02 0.74 16 31 H 0.08 2.53 7.15 -2.39 -0.02 2.51 16 32 H 0.34 13.20 6.46 -89.70 -0.58 12.62 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.46 7.45 -2.39 -0.02 1.44 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.00 -0.14 6.43 -2.39 -0.02 -0.16 16 39 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.40 7.83 9.06 -74.05 -0.67 7.16 16 Total: -1.00 -64.97 337.77 1.38 -63.59 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.23 Total: 26.70 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 3.51 Total: -41.21 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -2.84 Total: -82.24 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -1.09 Total: -13.29 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.97 1.38 -63.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.383 kcal (2) G-P(sol) polarization free energy of solvation -64.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds