Wall clock time and date at job start Mon Mar 30 2020 00:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34517 * 125.78655 * 2 1 4 4 C 1.41382 * 106.84076 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.83915 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.78689 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47458 * 89.99960 * 6 5 4 8 8 C 1.46894 * 111.00430 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47515 * 205.00020 * 8 7 6 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47328 * 60.00126 * 10 9 8 12 12 C 1.50701 * 109.46990 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00099 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99755 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00246 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99777 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47008 * 60.00170 * 16 14 12 18 18 H 1.48496 * 109.46873 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47134 * 299.99873 * 16 14 12 20 20 C 1.53002 * 109.46891 * 299.99597 * 11 10 9 21 21 C 1.52997 * 109.46978 * 60.00410 * 20 11 10 22 22 O 1.34302 * 108.42114 * 0.26248 * 5 4 3 23 23 H 1.09006 * 109.46832 * 90.00648 * 1 2 3 24 24 H 1.09009 * 109.47186 * 210.00373 * 1 2 3 25 25 H 1.08997 * 109.47719 * 330.00591 * 1 2 3 26 26 H 1.08001 * 126.57966 * 0.04643 * 3 2 1 27 27 H 1.07998 * 126.57947 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.46811 * 329.99549 * 6 5 4 29 29 H 1.09001 * 109.46991 * 209.99835 * 6 5 4 30 30 H 1.00901 * 111.00021 * 56.04380 * 7 6 5 31 31 H 1.08998 * 109.46828 * 325.00585 * 8 7 6 32 32 H 1.09002 * 109.47153 * 59.99762 * 9 8 7 33 33 H 1.09001 * 109.46832 * 299.99953 * 9 8 7 34 34 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 36 36 H 1.08992 * 109.47554 * 59.99639 * 11 10 9 37 37 H 0.96991 * 120.00061 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.47097 * 180.02562 * 20 11 10 39 39 H 1.09001 * 109.47142 * 300.00176 * 20 11 10 40 40 H 1.09001 * 109.47375 * 59.99908 * 21 20 11 41 41 H 1.09000 * 109.47140 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6377 -0.0003 7 7 5.1572 -1.9382 1.3847 8 6 6.3156 -2.8406 1.4240 9 6 6.3159 -3.6130 2.7447 10 6 7.5229 -4.5524 2.7858 11 6 8.8105 -3.7337 2.6735 12 6 9.9993 -4.6591 2.7134 13 1 9.8512 -5.7246 2.8088 14 6 11.2759 -4.1454 2.6270 15 7 11.4562 -2.8480 2.5094 16 14 12.7495 -5.2924 2.6772 17 1 12.6705 -6.2496 1.5445 18 1 13.9992 -4.4978 2.5681 19 1 12.7502 -6.0417 3.9593 20 6 8.8102 -2.9613 1.3528 21 6 7.6033 -2.0219 1.3117 22 8 2.2924 -1.0894 -0.0055 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 1.9664 2.1205 0.0007 27 1 4.5211 1.2435 -0.0004 28 1 5.6039 -1.1586 -0.5143 29 1 4.5107 -2.5633 -0.5139 30 1 4.3810 -2.3241 1.9011 31 1 6.2575 -3.5428 0.5923 32 1 5.3984 -4.1960 2.8249 33 1 6.3741 -2.9108 3.5763 34 1 7.5228 -5.1030 3.7265 35 1 7.4652 -5.2547 1.9542 36 1 8.8682 -3.0314 3.5051 37 1 12.3542 -2.4867 2.4490 38 1 9.7277 -2.3783 1.2726 39 1 8.7525 -3.6636 0.5212 40 1 7.6610 -1.3196 2.1433 41 1 7.6033 -1.4713 0.3710 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:43 Heat of formation + Delta-G solvation = -11.081183 kcal Electronic energy + Delta-G solvation = -19532.755284 eV Core-core repulsion = 16606.027140 eV Total energy + Delta-G solvation = -2926.728144 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.59919 -38.21036 -35.14158 -33.21737 -32.71011 -31.63694 -29.72588 -29.20419 -26.98044 -24.48086 -23.35674 -21.89155 -21.51863 -20.37844 -20.15399 -18.70534 -16.66894 -16.32356 -16.26395 -15.36788 -14.70046 -14.50189 -14.46035 -13.78185 -13.49937 -13.19360 -13.04280 -12.86445 -12.81608 -12.56251 -12.35385 -12.01244 -11.80405 -11.49576 -11.22165 -10.97018 -10.67811 -10.49117 -10.38212 -10.14397 -9.88634 -9.81422 -9.30887 -8.88753 -8.67864 -8.35789 -8.25508 -8.15960 -5.93237 -3.99483 1.64248 2.58708 2.82861 3.34166 3.38973 3.41453 4.39460 4.47918 4.62368 4.82442 5.01818 5.06315 5.19156 5.33394 5.35535 5.38853 5.45967 5.54808 5.62911 5.79648 5.89866 5.99935 6.10717 6.15868 6.32854 6.41998 6.44675 6.51480 6.61328 6.72634 6.78164 6.96112 7.14480 7.16700 7.25245 7.38374 7.54009 7.59253 7.80410 8.08115 8.21986 8.52422 9.04608 9.64803 11.12207 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.055265 B = 0.003294 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.524091 B = 8498.475840 C = 8798.462195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.022 4.022 3 C -0.212 4.212 4 C -0.189 4.189 5 C -0.008 4.008 6 C 0.141 3.859 7 N -0.683 5.683 8 C 0.091 3.909 9 C -0.115 4.115 10 C -0.106 4.106 11 C 0.049 3.951 12 C -0.514 4.514 13 H 0.052 0.948 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.110 4.110 21 C -0.102 4.102 22 O -0.178 6.178 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.338 0.662 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.026 0.974 37 H 0.260 0.740 38 H 0.093 0.907 39 H 0.030 0.970 40 H 0.060 0.940 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.518 5.673 -5.514 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.232 4.232 4 C -0.209 4.209 5 C -0.058 4.058 6 C 0.012 3.988 7 N -0.314 5.314 8 C -0.017 4.017 9 C -0.153 4.153 10 C -0.144 4.144 11 C 0.030 3.970 12 C -0.552 4.552 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.148 4.148 21 C -0.140 4.140 22 O -0.075 6.075 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.121 0.879 29 H 0.061 0.939 30 H 0.156 0.844 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.086 6.070 -5.467 19.845 hybrid contribution 0.505 -1.140 -0.276 1.277 sum -17.581 4.930 -5.742 19.140 Atomic orbital electron populations 1.20266 0.85367 1.03891 1.03249 1.22382 0.93884 0.84330 1.06656 1.21576 0.92907 0.99222 1.09461 1.21576 0.98019 0.93937 1.07367 1.22397 0.82460 0.94877 1.06080 1.20390 0.90698 0.95751 0.91952 1.60672 1.09457 1.50078 1.11220 1.21668 0.90368 0.92221 0.97458 1.21719 0.98468 0.98365 0.96797 1.21599 0.95254 0.97459 1.00067 1.18648 0.90393 0.93914 0.93998 1.21207 0.90884 0.93277 1.49822 0.92941 1.24966 0.98805 0.94950 0.95280 1.69865 1.21663 1.10928 1.50450 0.86722 0.82207 0.80893 0.78522 1.20399 1.21359 1.20376 1.21632 0.96915 0.97557 0.98728 1.21620 0.93834 0.98338 1.00228 1.83937 1.16631 1.35191 1.71781 0.90357 0.90705 0.89496 0.83702 0.83360 0.87863 0.93871 0.84440 0.94264 0.93912 0.91679 0.93304 0.93565 0.95603 0.93050 0.88893 0.95099 0.92158 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.00 0.38 -0.13 16 2 C -0.02 -0.25 7.32 -35.63 -0.26 -0.51 16 3 C -0.21 -2.44 10.81 -39.70 -0.43 -2.87 16 4 C -0.19 -2.44 10.81 -39.70 -0.43 -2.87 16 5 C -0.01 -0.11 6.83 -35.62 -0.24 -0.35 16 6 C 0.14 1.89 6.01 -4.98 -0.03 1.86 16 7 N -0.68 -10.18 6.30 -108.00 -0.68 -10.86 16 8 C 0.09 1.54 2.49 -67.71 -0.17 1.37 16 9 C -0.12 -2.02 5.19 -26.73 -0.14 -2.15 16 10 C -0.11 -2.18 5.14 -26.73 -0.14 -2.32 16 11 C 0.05 1.21 2.10 -91.77 -0.19 1.01 16 12 C -0.51 -14.12 8.56 -34.44 -0.29 -14.42 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.11 -2.56 4.98 -26.73 -0.13 -2.70 16 21 C -0.10 -1.98 5.42 -26.73 -0.14 -2.13 16 22 O -0.18 -2.42 10.65 5.71 0.06 -2.35 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.10 1.36 7.44 -51.93 -0.39 0.97 16 29 H 0.04 0.55 8.05 -51.93 -0.42 0.14 16 30 H 0.34 4.76 8.34 -39.29 -0.33 4.43 16 31 H 0.04 0.67 7.80 -51.93 -0.40 0.27 16 32 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.09 2.45 6.07 -51.93 -0.31 2.14 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.04 0.71 7.45 -51.93 -0.39 0.32 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -29.17 329.24 -9.23 -38.40 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.85 Total: 2.97 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -2.32 Total: -24.60 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.05 Total: -35.71 kcal Atomic # 8 Polarization: -2.42 SS G_CDS: 0.06 Total: -2.35 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.17 -9.23 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.319 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds