Wall clock time and date at job start Mon Mar 30 2020 00:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48494 * 109.47507 * 240.00201 * 3 2 1 5 5 H 1.48503 * 109.46748 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46990 * 120.00110 * 3 2 1 7 7 C 1.37880 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99675 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00324 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47452 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46933 * 299.99964 * 11 10 9 13 13 N 1.46906 * 109.46945 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 155.00126 * 13 12 11 15 15 C 1.53008 * 109.46622 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46668 * 180.02562 * 15 14 13 17 17 C 1.34514 * 125.79455 * 90.00179 * 16 15 14 18 18 C 1.41379 * 106.84289 * 179.97438 * 17 16 15 19 19 C 1.34517 * 106.84340 * 0.02562 * 18 17 16 20 20 O 1.34303 * 108.41395 * 359.73302 * 19 18 17 21 21 C 1.53001 * 109.47414 * 60.00103 * 12 11 10 22 22 C 1.52999 * 109.46919 * 299.99942 * 9 7 2 23 23 H 0.97001 * 120.00209 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47073 * 59.99849 * 9 7 2 25 25 H 1.08999 * 109.47180 * 59.99876 * 10 9 7 26 26 H 1.09007 * 109.47285 * 300.00228 * 10 9 7 27 27 H 1.08999 * 109.47280 * 180.02562 * 11 10 9 28 28 H 1.08999 * 109.46973 * 59.99819 * 11 10 9 29 29 H 1.08999 * 109.47173 * 299.99732 * 12 11 10 30 30 H 1.00896 * 111.00309 * 31.04538 * 13 12 11 31 31 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 32 32 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 33 33 H 1.09006 * 109.47203 * 299.99590 * 15 14 13 34 34 H 1.08995 * 109.47152 * 60.00028 * 15 14 13 35 35 H 1.07997 * 126.57835 * 0.03507 * 17 16 15 36 36 H 1.08002 * 126.57901 * 179.97438 * 18 17 16 37 37 H 1.08002 * 125.79096 * 180.02562 * 19 18 17 38 38 H 1.09008 * 109.46883 * 59.99234 * 21 12 11 39 39 H 1.08996 * 109.47627 * 180.02562 * 21 12 11 40 40 H 1.08999 * 109.47173 * 299.99846 * 22 9 7 41 41 H 1.08999 * 109.47006 * 60.00107 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 0.6010 -5.0678 1.2497 13 7 -0.1339 -6.3397 1.2500 14 6 -0.5003 -6.7356 2.6164 15 6 -1.2630 -8.0614 2.5760 16 6 -1.6394 -8.4672 3.9777 17 6 -2.7768 -8.1349 4.6143 18 6 -2.7150 -8.7245 5.8978 19 6 -1.5433 -9.3814 5.9691 20 8 -0.8985 -9.2267 4.8012 21 6 -0.3933 -3.9049 1.2497 22 6 0.3719 -2.5805 1.2490 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 2.8718 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 2.1885 -5.8156 0.0006 28 1 0.8532 -5.0451 -0.8896 29 1 1.2280 -5.0098 2.1394 30 1 0.3986 -7.0652 0.7938 31 1 0.4028 -6.8538 3.2150 32 1 -1.1325 -5.9666 3.0604 33 1 -2.1664 -7.9429 1.9775 34 1 -0.6313 -8.8306 2.1319 35 1 -3.5829 -7.5340 4.2202 36 1 -3.4644 -8.6592 6.6728 37 1 -1.1844 -9.9424 6.8193 38 1 -1.0202 -3.9629 0.3599 39 1 -1.0193 -3.9620 2.1401 40 1 0.9989 -2.5229 2.1388 41 1 -0.3364 -1.7520 1.2495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:24 Heat of formation + Delta-G solvation = -12.261948 kcal Electronic energy + Delta-G solvation = -19442.800361 eV Core-core repulsion = 16516.021015 eV Total energy + Delta-G solvation = -2926.779346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.67400 -38.25069 -35.56937 -33.32619 -32.77745 -31.49509 -29.70785 -28.78748 -26.82133 -24.22595 -22.69370 -21.87172 -21.49908 -20.49042 -20.27310 -18.65650 -17.45172 -16.28499 -16.19666 -15.58077 -15.01033 -14.71891 -14.35629 -14.03351 -13.59422 -12.97901 -12.94832 -12.85373 -12.72002 -12.47100 -12.36068 -11.85708 -11.46980 -11.25587 -11.16296 -10.93330 -10.66228 -10.44745 -10.33886 -10.13277 -10.04286 -9.79585 -9.29269 -8.87423 -8.64125 -8.56646 -8.24524 -8.16061 -5.92597 -3.98799 1.59536 2.49054 2.86030 3.34565 3.39280 3.41833 4.25342 4.48027 4.73958 4.87612 4.89871 5.06438 5.12272 5.36168 5.43207 5.45055 5.58661 5.68639 5.71653 5.87094 5.92107 5.96926 6.03206 6.18603 6.36135 6.38117 6.45207 6.47129 6.64102 6.74935 6.79191 6.98191 7.01594 7.18590 7.27975 7.41322 7.60011 7.61637 7.81275 8.08947 8.22908 8.53262 9.05271 9.65409 11.12838 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036109 B = 0.003313 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.251500 B = 8449.627839 C = 8821.324029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.092 3.908 13 N -0.688 5.688 14 C 0.064 3.936 15 C -0.038 4.038 16 C -0.004 4.004 17 C -0.211 4.211 18 C -0.213 4.213 19 C -0.049 4.049 20 O -0.178 6.178 21 C -0.101 4.101 22 C -0.110 4.110 23 H 0.259 0.741 24 H 0.026 0.974 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.334 0.666 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.200 0.800 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 -17.459 8.218 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.017 4.017 13 N -0.318 5.318 14 C -0.066 4.066 15 C -0.076 4.076 16 C -0.054 4.054 17 C -0.230 4.230 18 C -0.232 4.232 19 C -0.117 4.117 20 O -0.074 6.074 21 C -0.139 4.139 22 C -0.148 4.148 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.152 0.848 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.217 0.783 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.197 -17.149 8.009 19.387 hybrid contribution 1.076 0.667 0.700 1.446 sum -3.121 -16.482 8.709 18.901 Atomic orbital electron populations 1.69871 1.05808 1.26336 1.50879 1.24966 0.94833 0.98926 0.95278 0.86721 0.79644 0.83457 0.78519 1.20372 1.21357 1.20406 1.21211 0.92797 0.90883 1.50319 0.92956 1.18641 0.92569 0.91317 0.94378 1.21599 0.98612 0.94189 1.00033 1.21718 0.97665 0.98398 0.97558 1.21621 0.93956 0.88797 0.97308 1.60583 1.49035 1.05711 1.16501 1.21945 0.98424 0.95478 0.90748 1.20145 1.02734 0.97379 0.87324 1.22484 0.91754 0.97016 0.94196 1.21644 0.99852 1.06204 0.95326 1.21850 0.99336 1.03190 0.98838 1.23994 0.93972 1.05110 0.88613 1.84017 1.44579 1.56190 1.22637 1.21595 0.97177 0.94772 1.00397 1.21619 0.99588 0.95093 0.98541 0.93065 0.95611 0.93628 0.93337 0.93973 0.91709 0.94524 0.84837 0.95279 0.90392 0.87889 0.90323 0.83353 0.83562 0.78297 0.92242 0.94334 0.95183 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.20 8.56 -34.44 -0.29 -14.50 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.05 1.23 2.10 -91.78 -0.19 1.03 16 10 C -0.11 -2.20 5.14 -26.74 -0.14 -2.34 16 11 C -0.12 -2.00 5.19 -26.73 -0.14 -2.14 16 12 C 0.09 1.56 2.49 -67.71 -0.17 1.39 16 13 N -0.69 -9.66 6.31 -106.72 -0.67 -10.33 16 14 C 0.06 0.81 5.47 -3.82 -0.02 0.79 16 15 C -0.04 -0.40 6.01 -27.88 -0.17 -0.57 16 16 C 0.00 -0.04 6.57 -35.63 -0.23 -0.28 16 17 C -0.21 -2.35 10.81 -39.70 -0.43 -2.78 16 18 C -0.21 -2.12 10.91 -39.70 -0.43 -2.55 16 19 C -0.05 -0.47 12.09 29.42 0.36 -0.11 16 20 O -0.18 -2.12 10.65 5.71 0.06 -2.06 16 21 C -0.10 -2.00 5.42 -26.75 -0.15 -2.14 16 22 C -0.11 -2.60 4.97 -26.75 -0.13 -2.74 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 27 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.65 7.80 -51.93 -0.41 0.25 16 30 H 0.33 4.11 8.35 -39.29 -0.33 3.79 16 31 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 32 H 0.08 1.08 7.44 -51.93 -0.39 0.70 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 39 H 0.04 0.72 7.45 -51.93 -0.39 0.33 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -29.39 328.83 -9.14 -38.53 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.85 Total: 2.77 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -2.24 Total: -25.33 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.05 Total: -35.28 kcal Atomic # 8 Polarization: -2.12 SS G_CDS: 0.06 Total: -2.06 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.39 -9.14 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.265 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds