Wall clock time and date at job start Mon Mar 30 2020 00:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48494 * 109.47507 * 240.00201 * 3 2 1 5 5 H 1.48503 * 109.46748 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46990 * 120.00110 * 3 2 1 7 7 C 1.37880 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99675 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00324 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47452 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46933 * 299.99964 * 11 10 9 13 13 N 1.46906 * 109.46945 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 155.00126 * 13 12 11 15 15 C 1.53008 * 109.46622 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46668 * 180.02562 * 15 14 13 17 17 C 1.34514 * 125.79455 * 90.00179 * 16 15 14 18 18 C 1.41379 * 106.84289 * 179.97438 * 17 16 15 19 19 C 1.34517 * 106.84340 * 0.02562 * 18 17 16 20 20 O 1.34303 * 108.41395 * 359.73302 * 19 18 17 21 21 C 1.53001 * 109.47414 * 60.00103 * 12 11 10 22 22 C 1.52999 * 109.46919 * 299.99942 * 9 7 2 23 23 H 0.97001 * 120.00209 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47073 * 59.99849 * 9 7 2 25 25 H 1.08999 * 109.47180 * 59.99876 * 10 9 7 26 26 H 1.09007 * 109.47285 * 300.00228 * 10 9 7 27 27 H 1.08999 * 109.47280 * 180.02562 * 11 10 9 28 28 H 1.08999 * 109.46973 * 59.99819 * 11 10 9 29 29 H 1.08999 * 109.47173 * 299.99732 * 12 11 10 30 30 H 1.00896 * 111.00309 * 31.04538 * 13 12 11 31 31 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 32 32 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 33 33 H 1.09006 * 109.47203 * 299.99590 * 15 14 13 34 34 H 1.08995 * 109.47152 * 60.00028 * 15 14 13 35 35 H 1.07997 * 126.57835 * 0.03507 * 17 16 15 36 36 H 1.08002 * 126.57901 * 179.97438 * 18 17 16 37 37 H 1.08002 * 125.79096 * 180.02562 * 19 18 17 38 38 H 1.09008 * 109.46883 * 59.99234 * 21 12 11 39 39 H 1.08996 * 109.47627 * 180.02562 * 21 12 11 40 40 H 1.08999 * 109.47173 * 299.99846 * 22 9 7 41 41 H 1.08999 * 109.47006 * 60.00107 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 0.6010 -5.0678 1.2497 13 7 -0.1339 -6.3397 1.2500 14 6 -0.5003 -6.7356 2.6164 15 6 -1.2630 -8.0614 2.5760 16 6 -1.6394 -8.4672 3.9777 17 6 -2.7768 -8.1349 4.6143 18 6 -2.7150 -8.7245 5.8978 19 6 -1.5433 -9.3814 5.9691 20 8 -0.8985 -9.2267 4.8012 21 6 -0.3933 -3.9049 1.2497 22 6 0.3719 -2.5805 1.2490 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 2.8718 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 2.1885 -5.8156 0.0006 28 1 0.8532 -5.0451 -0.8896 29 1 1.2280 -5.0098 2.1394 30 1 0.3986 -7.0652 0.7938 31 1 0.4028 -6.8538 3.2150 32 1 -1.1325 -5.9666 3.0604 33 1 -2.1664 -7.9429 1.9775 34 1 -0.6313 -8.8306 2.1319 35 1 -3.5829 -7.5340 4.2202 36 1 -3.4644 -8.6592 6.6728 37 1 -1.1844 -9.9424 6.8193 38 1 -1.0202 -3.9629 0.3599 39 1 -1.0193 -3.9620 2.1401 40 1 0.9989 -2.5229 2.1388 41 1 -0.3364 -1.7520 1.2495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:23 Heat of formation + Delta-G solvation = -28.929557 kcal Electronic energy + Delta-G solvation = -19443.523122 eV Core-core repulsion = 16516.021015 eV Total energy + Delta-G solvation = -2927.502108 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.45665 -39.76385 -36.92439 -34.76253 -33.88769 -32.84041 -31.38920 -30.21352 -28.02484 -26.01475 -23.91594 -23.03299 -22.64824 -21.95397 -21.24445 -20.35856 -18.38268 -18.22658 -17.09003 -16.75585 -16.52081 -16.05860 -15.69559 -15.21898 -14.96431 -14.66516 -14.41503 -14.03834 -13.72884 -13.56188 -13.50499 -13.14720 -13.08011 -12.87199 -12.72757 -12.49048 -12.27934 -12.08322 -11.94763 -11.81229 -11.65874 -11.14597 -10.84041 -10.73376 -10.50649 -10.34360 -9.39521 -9.33283 -8.05357 -6.19659 0.80988 1.41536 1.42668 1.50303 1.71639 2.11965 2.44573 3.16743 3.21667 3.92413 3.94290 4.02342 4.09002 4.15949 4.26786 4.33140 4.45177 4.55243 4.61274 4.69908 4.82677 4.86653 4.89342 4.92857 4.97634 5.00024 5.07144 5.11225 5.19702 5.28129 5.34529 5.44111 5.51448 5.62803 5.63119 5.72381 6.05736 6.09736 6.22447 6.23426 6.43814 6.57099 6.93563 7.48155 8.98247 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036109 B = 0.003313 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.251500 B = 8449.627839 C = 8821.324029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.100 4.100 11 C -0.107 4.107 12 C 0.102 3.898 13 N -0.684 5.684 14 C 0.069 3.931 15 C -0.028 4.028 16 C -0.024 4.024 17 C -0.224 4.224 18 C -0.229 4.229 19 C -0.047 4.047 20 O -0.194 6.194 21 C -0.092 4.092 22 C -0.102 4.102 23 H 0.259 0.741 24 H -0.007 1.007 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.350 0.650 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.236 0.764 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.022 0.978 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 -19.036 8.937 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.007 4.007 13 N -0.316 5.316 14 C -0.061 4.061 15 C -0.065 4.065 16 C -0.075 4.075 17 C -0.243 4.243 18 C -0.248 4.248 19 C -0.114 4.114 20 O -0.091 6.091 21 C -0.130 4.130 22 C -0.140 4.140 23 H 0.068 0.932 24 H 0.011 0.989 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.169 0.831 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.172 0.828 36 H 0.184 0.816 37 H 0.252 0.748 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.518 -18.747 8.722 20.973 hybrid contribution 0.828 1.151 0.518 1.509 sum -2.689 -17.596 9.240 20.055 Atomic orbital electron populations 1.70024 1.07140 1.27013 1.51443 1.25754 0.95673 1.02349 0.94988 0.85719 0.78460 0.79329 0.78788 1.19647 1.21012 1.19743 1.21633 0.93009 0.92508 1.50360 0.93127 1.18620 0.93068 0.92323 0.93291 1.21468 0.97859 0.94463 1.00075 1.21623 0.97978 0.97445 0.97452 1.21345 0.93046 0.89207 0.97135 1.60412 1.48642 1.04997 1.17539 1.21890 0.98268 0.96233 0.89680 1.20033 1.02902 0.96339 0.87269 1.22635 0.92181 0.97911 0.94743 1.21938 1.00033 1.06243 0.96109 1.22193 1.00281 1.03384 0.98955 1.24768 0.93606 1.04421 0.88578 1.84008 1.45180 1.56446 1.23466 1.21425 0.97353 0.94092 1.00140 1.21405 0.98777 0.96203 0.97645 0.93158 0.98879 0.93604 0.93213 0.90458 0.92026 0.94751 0.83061 0.95535 0.91902 0.87307 0.88956 0.82828 0.81642 0.74782 0.93430 0.93587 0.95910 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.15 11.32 21.45 0.24 -53.90 16 2 C 0.01 0.61 5.30 84.66 0.45 1.06 16 3 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -30.23 8.56 25.60 0.22 -30.01 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.31 2.10 -11.54 -0.02 2.29 16 10 C -0.10 -4.11 5.14 30.59 0.16 -3.95 16 11 C -0.11 -3.50 5.19 30.59 0.16 -3.34 16 12 C 0.10 3.33 2.49 44.91 0.11 3.44 16 13 N -0.68 -17.75 6.31 -491.55 -3.10 -20.86 16 14 C 0.07 1.64 5.47 86.31 0.47 2.11 16 15 C -0.03 -0.54 6.01 29.85 0.18 -0.36 16 16 C -0.02 -0.54 6.57 24.83 0.16 -0.37 16 17 C -0.22 -4.75 10.81 22.19 0.24 -4.51 16 18 C -0.23 -4.16 10.91 22.19 0.24 -3.92 16 19 C -0.05 -0.79 12.09 66.97 0.81 0.02 16 20 O -0.19 -4.29 10.65 -2.49 -0.03 -4.32 16 21 C -0.09 -3.64 5.42 30.58 0.17 -3.48 16 22 C -0.10 -4.95 4.97 30.58 0.15 -4.80 16 23 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 24 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.08 2.03 8.12 -2.39 -0.02 2.02 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.03 1.16 7.80 -2.39 -0.02 1.14 16 30 H 0.35 7.50 8.35 -89.70 -0.75 6.76 16 31 H 0.03 0.66 8.05 -2.39 -0.02 0.64 16 32 H 0.06 1.69 7.44 -2.38 -0.02 1.68 16 33 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.24 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.05 1.73 7.45 -2.39 -0.02 1.71 16 40 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 Total: -1.00 -64.38 328.83 2.88 -61.49 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.25 Total: 17.05 kcal Atomic # 6 Polarization: -49.34 SS G_CDS: 3.50 Total: -45.84 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.86 Total: -74.76 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.03 Total: -4.32 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.38 2.88 -61.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.563 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds