Wall clock time and date at job start Mon Mar 30 2020 00:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38168 * 120.02589 * 2 1 4 4 C 1.38245 * 120.05357 * 179.97438 * 3 2 1 5 5 C 1.38290 * 120.11048 * 0.02562 * 4 3 2 6 6 C 1.38126 * 120.05514 * 359.74562 * 5 4 3 7 7 C 1.50700 * 120.02482 * 180.26961 * 6 5 4 8 8 N 1.46502 * 109.47140 * 258.73887 * 7 6 5 9 9 C 1.46497 * 120.00660 * 264.03956 * 8 7 6 10 10 C 1.36943 * 119.99669 * 84.04400 * 8 7 6 11 11 H 1.08007 * 119.99931 * 5.79767 * 10 8 7 12 12 C 1.38806 * 120.00002 * 185.79987 * 10 8 7 13 13 N 1.31615 * 120.00215 * 10.86275 * 12 10 8 14 14 Si 1.86796 * 119.99928 * 190.86237 * 12 10 8 15 15 H 1.48500 * 109.47290 * 90.00187 * 14 12 10 16 16 H 1.48502 * 109.47350 * 209.99989 * 14 12 10 17 17 H 1.48500 * 109.47211 * 329.99893 * 14 12 10 18 18 C 1.38706 * 120.02724 * 180.02562 * 2 1 3 19 19 O 1.35900 * 120.05530 * 359.95866 * 18 2 1 20 20 C 1.42903 * 116.99968 * 277.65008 * 19 18 2 21 21 C 1.52995 * 109.47156 * 153.69736 * 20 19 18 22 22 C 1.52995 * 109.47340 * 273.70223 * 20 19 18 23 23 H 1.09007 * 109.46569 * 273.69082 * 1 2 3 24 24 H 1.08992 * 109.46990 * 33.68672 * 1 2 3 25 25 H 1.09002 * 109.46937 * 153.69386 * 1 2 3 26 26 H 1.07999 * 119.97369 * 0.02878 * 3 2 1 27 27 H 1.07998 * 119.94205 * 180.02562 * 4 3 2 28 28 H 1.08000 * 119.96934 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.47190 * 18.74796 * 7 6 5 30 30 H 1.09006 * 109.46597 * 138.74566 * 7 6 5 31 31 H 1.09009 * 109.46693 * 354.50473 * 9 8 7 32 32 H 1.08993 * 109.47040 * 114.50030 * 9 8 7 33 33 H 1.08999 * 109.47381 * 234.50891 * 9 8 7 34 34 H 0.96997 * 120.00493 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.46934 * 33.70040 * 20 19 18 36 36 H 1.09000 * 109.47225 * 64.73351 * 21 20 19 37 37 H 1.09000 * 109.47086 * 184.73018 * 21 20 19 38 38 H 1.09002 * 109.47582 * 304.72961 * 21 20 19 39 39 H 1.09005 * 109.47135 * 66.97719 * 22 20 19 40 40 H 1.08998 * 109.47311 * 186.97902 * 22 20 19 41 41 H 1.09006 * 109.47188 * 306.98131 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1963 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0010 0.0005 6 6 3.5887 -1.1976 0.0053 7 6 4.3460 -2.5004 0.0114 8 7 4.3591 -3.0640 -1.3407 9 6 3.3654 -4.0696 -1.7250 10 6 5.3003 -2.6509 -2.2456 11 1 6.0893 -1.9812 -1.9365 12 6 5.2405 -3.0930 -3.5600 13 7 4.1728 -3.7297 -3.9922 14 14 6.6753 -2.7840 -4.7155 15 1 7.6271 -3.9212 -4.6379 16 1 6.1716 -2.6542 -6.1065 17 1 7.3677 -1.5310 -4.3210 18 6 2.2012 -1.2009 -0.0005 19 8 1.5234 -2.3788 -0.0002 20 6 1.0537 -2.8567 1.2620 21 6 -0.1703 -3.7488 1.0461 22 6 2.1592 -3.6641 1.9452 23 1 -0.3633 0.0662 1.0256 24 1 -0.3633 0.8550 -0.5700 25 1 -0.3633 -0.9213 -0.4554 26 1 1.6585 2.1316 0.0005 27 1 4.1195 2.1330 0.0010 28 1 5.3553 0.0042 0.0014 29 1 5.3697 -2.3241 0.3416 30 1 3.8602 -3.1998 0.6919 31 1 2.7683 -4.3414 -0.8544 32 1 2.7152 -3.6608 -2.4983 33 1 3.8735 -4.9547 -2.1078 34 1 4.1310 -4.0389 -4.9107 35 1 0.7798 -2.0103 1.8918 36 1 0.1220 -4.6378 0.4873 37 1 -0.5789 -4.0451 2.0122 38 1 -0.9262 -3.1993 0.4851 39 1 2.9824 -3.0007 2.2107 40 1 1.7636 -4.1312 2.8470 41 1 2.5194 -4.4354 1.2644 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232390550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:45 Heat of formation + Delta-G solvation = 10.038113 kcal Electronic energy + Delta-G solvation = -21122.382797 eV Core-core repulsion = 18196.570454 eV Total energy + Delta-G solvation = -2925.812343 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.84324 -37.13280 -35.50184 -32.84237 -32.54129 -31.02155 -29.34937 -27.24154 -26.39077 -25.78610 -25.35975 -22.05346 -21.62366 -20.47442 -19.81465 -17.45558 -16.58872 -15.62900 -15.24565 -14.98355 -14.63425 -14.06839 -13.68547 -13.32541 -13.24673 -12.96628 -12.79194 -12.63143 -12.38037 -12.12311 -12.00141 -11.86256 -11.45246 -11.32686 -11.12015 -10.92551 -10.81289 -10.61823 -10.53901 -10.31284 -10.02039 -9.77989 -9.68534 -9.29274 -8.45548 -8.07224 -7.90403 -6.76596 -5.52348 -2.94884 1.77320 1.92006 3.44644 3.49712 3.51638 3.90890 4.38118 4.61234 5.08173 5.18526 5.26119 5.30238 5.36656 5.47823 5.59815 5.65053 5.69877 5.79238 5.81316 5.88978 5.94441 5.96526 5.99215 6.04193 6.17058 6.28290 6.34971 6.40561 6.45626 6.64301 6.72043 6.95160 7.02980 7.07074 7.26292 7.37176 7.71489 7.87433 8.12578 8.20032 8.50623 9.37588 10.01303 10.44888 11.45054 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.007530 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.077387 B = 3717.699292 C = 4452.602276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.117 4.117 3 C -0.129 4.129 4 C -0.127 4.127 5 C -0.106 4.106 6 C -0.091 4.091 7 C 0.175 3.825 8 N -0.591 5.591 9 C 0.174 3.826 10 C -0.242 4.242 11 H 0.072 0.928 12 C -0.006 4.006 13 N -0.911 5.911 14 Si 0.905 3.095 15 H -0.289 1.289 16 H -0.292 1.292 17 H -0.282 1.282 18 C 0.107 3.893 19 O -0.311 6.311 20 C 0.087 3.913 21 C -0.147 4.147 22 C -0.181 4.181 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.002 0.998 32 H 0.050 0.950 33 H 0.024 0.976 34 H 0.248 0.752 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 4.620 12.469 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C -0.148 4.148 4 C -0.145 4.145 5 C -0.125 4.125 6 C -0.095 4.095 7 C 0.047 3.953 8 N -0.312 5.312 9 C 0.030 3.970 10 C -0.371 4.371 11 H 0.090 0.910 12 C -0.202 4.202 13 N -0.558 5.558 14 Si 0.736 3.264 15 H -0.217 1.217 16 H -0.219 1.219 17 H -0.207 1.207 18 C 0.063 3.937 19 O -0.228 6.228 20 C 0.031 3.969 21 C -0.204 4.204 22 C -0.238 4.238 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.020 0.980 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.211 4.359 12.113 14.756 hybrid contribution 0.824 0.535 -0.797 1.265 sum -6.387 4.894 11.316 13.885 Atomic orbital electron populations 1.20644 0.91635 1.02877 1.01208 1.20114 0.96012 0.92989 1.02652 1.20669 0.94130 0.96496 1.03502 1.21018 0.94151 0.97751 1.01609 1.20895 0.99595 0.91592 1.00454 1.21492 0.93436 0.98463 0.96107 1.20115 0.96443 0.89768 0.88940 1.44158 1.34714 1.44004 1.08304 1.20969 0.90529 0.90779 0.94705 1.19317 1.02981 1.24783 0.90051 0.91035 1.24840 0.97523 1.00984 0.96876 1.70215 1.26365 1.43753 1.15489 0.86219 0.81985 0.77718 0.80458 1.21668 1.21875 1.20744 1.18254 0.89649 0.84367 1.01467 1.86207 1.72187 1.35848 1.28550 1.22215 0.93897 0.95809 0.84983 1.21839 0.96484 1.00222 1.01877 1.22557 0.99318 1.01355 1.00598 0.92230 0.92023 0.91119 0.86843 0.86827 0.86422 0.93826 0.91571 0.97963 0.93179 0.95753 0.94087 0.92784 0.91456 0.91542 0.92033 0.91947 0.92118 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.45 36.01 0.34 -1.15 16 2 C -0.12 -2.01 5.86 -104.47 -0.61 -2.62 16 3 C -0.13 -2.07 9.71 -39.60 -0.38 -2.45 16 4 C -0.13 -2.09 10.04 -39.56 -0.40 -2.49 16 5 C -0.11 -1.98 9.66 -39.60 -0.38 -2.37 16 6 C -0.09 -1.84 5.43 -104.47 -0.57 -2.41 16 7 C 0.17 3.75 5.37 -5.19 -0.03 3.72 16 8 N -0.59 -15.45 2.93 -182.50 -0.53 -15.99 16 9 C 0.17 4.57 8.36 59.85 0.50 5.07 16 10 C -0.24 -6.87 9.79 -15.06 -0.15 -7.02 16 11 H 0.07 1.97 7.85 -52.48 -0.41 1.56 16 12 C -0.01 -0.17 5.35 -17.43 -0.09 -0.26 16 13 N -0.91 -27.58 9.71 55.49 0.54 -27.04 16 14 Si 0.91 22.75 29.57 -169.99 -5.03 17.73 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 C 0.11 2.07 5.50 -39.22 -0.22 1.86 16 19 O -0.31 -5.81 6.64 -19.43 -0.13 -5.94 16 20 C 0.09 1.24 3.11 -26.74 -0.08 1.16 16 21 C -0.15 -1.77 9.56 37.15 0.36 -1.41 16 22 C -0.18 -2.46 7.82 37.16 0.29 -2.17 16 23 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 24 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 25 H 0.07 1.04 7.42 -51.93 -0.39 0.66 16 26 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.12 2.07 8.03 -52.49 -0.42 1.65 16 29 H 0.04 0.90 7.94 -51.93 -0.41 0.49 16 30 H 0.07 1.29 3.29 -51.93 -0.17 1.12 16 31 H 0.00 0.04 5.84 -51.92 -0.30 -0.26 16 32 H 0.05 1.48 6.76 -51.93 -0.35 1.13 16 33 H 0.02 0.68 7.42 -51.93 -0.39 0.29 16 34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.88 6.91 -51.93 -0.36 0.52 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.13 6.48 -51.93 -0.34 0.79 16 LS Contribution 324.16 15.07 4.88 4.88 Total: -1.00 -31.83 324.16 -8.15 -39.98 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.46 Total: -1.10 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.42 Total: -12.52 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.00 Total: -43.03 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.13 Total: -5.94 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.83 -8.15 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232390550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.016 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds