Wall clock time and date at job start Mon Mar 30 2020 00:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38289 * 119.93928 * 2 1 4 4 C 1.38127 * 120.05154 * 180.02562 * 3 2 1 5 5 C 1.38750 * 119.94161 * 359.97438 * 4 3 2 6 6 O 1.35907 * 120.05030 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00578 * 4.70637 * 6 5 4 8 8 C 1.52992 * 109.47394 * 155.34798 * 7 6 5 9 9 C 1.52993 * 109.47172 * 275.35491 * 7 6 5 10 10 C 1.38712 * 119.89372 * 0.02562 * 5 4 3 11 11 C 1.50700 * 120.02736 * 179.97438 * 10 5 4 12 12 N 1.46498 * 109.47278 * 80.00035 * 11 10 5 13 13 C 1.46498 * 119.99695 * 269.99342 * 12 11 10 14 14 C 1.36928 * 120.00078 * 89.99895 * 12 11 10 15 15 H 1.08001 * 120.00517 * 22.02098 * 14 12 11 16 16 C 1.38816 * 119.99784 * 202.02445 * 14 12 11 17 17 N 1.31611 * 120.00295 * 18.53808 * 16 14 12 18 18 Si 1.86807 * 119.99868 * 198.54211 * 16 14 12 19 19 H 1.48494 * 109.47226 * 59.99760 * 18 16 14 20 20 H 1.48498 * 109.46854 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47116 * 299.99637 * 18 16 14 22 22 C 1.38167 * 119.94164 * 0.24827 * 10 5 4 23 23 H 1.09004 * 109.46512 * 90.00168 * 1 2 3 24 24 H 1.09001 * 109.46941 * 209.99743 * 1 2 3 25 25 H 1.09002 * 109.46946 * 330.00332 * 1 2 3 26 26 H 1.07997 * 119.97450 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.02900 * 179.97438 * 4 3 2 28 28 H 1.09008 * 109.46484 * 35.34785 * 7 6 5 29 29 H 1.09003 * 109.46964 * 60.00775 * 8 7 6 30 30 H 1.09004 * 109.47017 * 179.97438 * 8 7 6 31 31 H 1.09000 * 109.47273 * 300.00053 * 8 7 6 32 32 H 1.08999 * 109.46937 * 299.99658 * 9 7 6 33 33 H 1.09000 * 109.47684 * 59.99537 * 9 7 6 34 34 H 1.09004 * 109.47388 * 179.97438 * 9 7 6 35 35 H 1.09003 * 109.46886 * 319.99444 * 11 10 5 36 36 H 1.09007 * 109.46587 * 199.99771 * 11 10 5 37 37 H 1.09007 * 109.47257 * 94.96041 * 13 12 11 38 38 H 1.08997 * 109.47202 * 214.95513 * 13 12 11 39 39 H 1.09004 * 109.47573 * 334.96052 * 13 12 11 40 40 H 0.97004 * 120.00418 * 179.97438 * 17 16 14 41 41 H 1.07994 * 119.96968 * 179.74745 * 22 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6325 0.0002 -0.0016 7 6 6.2813 1.2691 0.1018 8 6 7.6814 1.0797 0.6889 9 6 6.3918 1.9001 -1.2876 10 6 3.5787 -1.2005 -0.0005 11 6 4.3304 -2.5067 -0.0011 12 7 4.7824 -2.8106 1.3588 13 6 6.0913 -2.3394 1.8181 14 6 3.9815 -3.5352 2.2006 15 1 3.2113 -4.1748 1.7957 16 6 4.1597 -3.4476 3.5745 17 7 4.8186 -2.4312 4.0892 18 14 3.4642 -4.7725 4.6929 19 1 4.0613 -6.0846 4.3366 20 1 3.7889 -4.4485 6.1052 21 1 1.9901 -4.8377 4.5257 22 6 2.1971 -1.1979 -0.0057 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6559 2.1328 -0.0004 27 1 4.1172 2.1372 -0.0010 28 1 5.6998 1.9225 0.7524 29 1 8.2628 0.4264 0.0383 30 1 8.1765 2.0477 0.7673 31 1 7.6026 0.6303 1.6787 32 1 6.9732 1.2467 -1.9381 33 1 5.3944 2.0351 -1.7058 34 1 6.8864 2.8683 -1.2087 35 1 5.1937 -2.4288 -0.6621 36 1 3.6744 -3.3032 -0.3525 37 1 5.9719 -1.3942 2.3477 38 1 6.5288 -3.0788 2.4889 39 1 6.7472 -2.1946 0.9596 40 1 4.9428 -2.3698 5.0493 41 1 1.6558 -2.1324 -0.0098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232399127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:58 Heat of formation + Delta-G solvation = -0.873895 kcal Electronic energy + Delta-G solvation = -20787.461130 eV Core-core repulsion = 17861.175607 eV Total energy + Delta-G solvation = -2926.285523 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82244 -37.44023 -35.41432 -33.12685 -31.77408 -31.03076 -29.99690 -27.18699 -26.07444 -25.84019 -25.25933 -22.72011 -21.49775 -20.22080 -19.68267 -17.62024 -16.55901 -15.55888 -15.10384 -14.85352 -14.42675 -14.11786 -13.75641 -13.49607 -13.24394 -13.09314 -12.86091 -12.69192 -12.37696 -12.16508 -11.96956 -11.81346 -11.59445 -11.21451 -11.10077 -10.98072 -10.78222 -10.72023 -10.53292 -10.20119 -10.10213 -10.06520 -9.88020 -9.75033 -8.44162 -8.16538 -7.32324 -6.63853 -5.64477 -3.05366 2.01444 2.08609 3.43694 3.48921 3.50405 3.73401 4.36690 4.60908 4.99604 5.11914 5.24334 5.34305 5.39506 5.44416 5.53944 5.64262 5.69490 5.80768 5.84079 5.88134 5.91162 5.95514 5.97369 6.17276 6.19588 6.29178 6.34745 6.38602 6.44119 6.66667 6.79869 6.95067 7.01264 7.14232 7.29009 7.46748 7.51547 7.87016 7.90844 8.11754 8.47955 9.31945 9.96850 10.47881 11.39699 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.008007 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.034837 B = 3495.916353 C = 4739.187036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.131 4.131 3 C -0.102 4.102 4 C -0.213 4.213 5 C 0.137 3.863 6 O -0.295 6.295 7 C 0.078 3.922 8 C -0.147 4.147 9 C -0.177 4.177 10 C -0.104 4.104 11 C 0.190 3.810 12 N -0.586 5.586 13 C 0.171 3.829 14 C -0.252 4.252 15 H 0.067 0.933 16 C 0.003 3.997 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.284 1.284 22 C -0.073 4.073 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.029 0.971 38 H 0.031 0.969 39 H 0.004 0.996 40 H 0.251 0.749 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 8.735 -9.765 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 C -0.121 4.121 4 C -0.232 4.232 5 C 0.091 3.909 6 O -0.209 6.209 7 C 0.021 3.979 8 C -0.204 4.204 9 C -0.234 4.234 10 C -0.108 4.108 11 C 0.062 3.938 12 N -0.306 5.306 13 C 0.026 3.974 14 C -0.382 4.382 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.543 5.543 18 Si 0.729 3.271 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.210 1.210 22 C -0.092 4.092 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.023 0.977 40 H 0.061 0.939 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.001 8.572 -9.572 12.849 hybrid contribution -0.537 -0.135 0.968 1.116 sum -0.536 8.436 -8.604 12.062 Atomic orbital electron populations 1.20642 0.92020 1.02116 1.01181 1.19683 0.95480 0.93292 1.04706 1.20524 0.93256 0.96915 1.01417 1.21072 0.95177 0.96658 1.10314 1.18742 0.82167 0.93451 0.96496 1.86197 1.16360 1.30520 1.87829 1.22278 0.94339 0.84926 0.96322 1.21818 0.94161 1.02044 1.02362 1.22377 1.02678 1.00821 0.97569 1.20535 0.93541 0.95897 1.00804 1.19796 0.95455 0.90018 0.88484 1.44098 1.15613 1.61080 1.09827 1.20701 0.83979 0.98511 0.94163 1.19168 1.14885 1.16934 0.87214 0.91478 1.24969 1.00368 0.97298 0.96961 1.70107 1.45286 1.27991 1.10910 0.86412 0.78754 0.82022 0.79863 1.21123 1.21761 1.20999 1.20669 0.92835 0.97077 0.98652 0.92223 0.91930 0.92429 0.87146 0.86428 0.91471 0.91764 0.91349 0.91063 0.91696 0.92069 0.91691 0.93255 0.93216 0.95292 0.94995 0.97718 0.93891 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.01 36.01 0.36 -1.06 16 2 C -0.13 -2.29 5.88 -104.60 -0.62 -2.91 16 3 C -0.10 -1.72 9.69 -39.60 -0.38 -2.11 16 4 C -0.21 -3.76 8.24 -39.43 -0.32 -4.08 16 5 C 0.14 2.74 6.57 -39.22 -0.26 2.49 16 6 O -0.30 -5.63 7.77 -19.45 -0.15 -5.78 16 7 C 0.08 1.16 2.85 -26.74 -0.08 1.08 16 8 C -0.15 -1.96 9.56 37.15 0.36 -1.60 16 9 C -0.18 -2.12 9.17 37.15 0.34 -1.78 16 10 C -0.10 -2.20 5.48 -104.47 -0.57 -2.77 16 11 C 0.19 4.22 5.51 -5.19 -0.03 4.19 16 12 N -0.59 -15.35 2.90 -182.50 -0.53 -15.88 16 13 C 0.17 4.41 8.01 59.85 0.48 4.89 16 14 C -0.25 -7.12 9.63 -15.06 -0.15 -7.27 16 15 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 16 C 0.00 0.08 4.98 -17.43 -0.09 0.00 16 17 N -0.90 -27.00 10.99 55.49 0.61 -26.39 16 18 Si 0.90 22.37 29.59 -169.99 -5.03 17.33 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.07 -1.43 9.32 -39.61 -0.37 -1.80 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 25 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 26 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.12 1.79 5.44 -52.49 -0.29 1.50 16 28 H 0.07 1.01 6.29 -51.92 -0.33 0.68 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.76 6.93 -51.93 -0.36 0.40 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 1.04 7.57 -51.93 -0.39 0.65 16 36 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 37 H 0.03 0.81 7.37 -51.93 -0.38 0.43 16 38 H 0.03 0.87 7.41 -51.93 -0.38 0.48 16 39 H 0.00 0.10 7.64 -51.93 -0.40 -0.30 16 40 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.12 2.23 8.03 -52.49 -0.42 1.81 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -31.58 331.32 -8.14 -39.72 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.71 Total: -1.25 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.32 Total: -12.75 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.08 Total: -42.27 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.15 Total: -5.78 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.58 -8.14 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232399127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.847 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds