Wall clock time and date at job start Mon Mar 30 2020 00:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47477 * 2 1 4 4 C 1.38285 * 119.97437 * 89.99896 * 3 2 1 5 5 C 1.38247 * 120.11019 * 180.02562 * 4 3 2 6 6 C 1.38166 * 120.05899 * 0.26136 * 5 4 3 7 7 C 1.50699 * 120.02706 * 179.71738 * 6 5 4 8 8 N 1.46890 * 109.47228 * 267.30981 * 7 6 5 9 9 C 1.46900 * 111.00409 * 287.56415 * 8 7 6 10 10 C 1.52995 * 109.46819 * 296.80044 * 9 8 7 11 11 C 1.46907 * 111.00032 * 163.60810 * 8 7 6 12 12 C 1.50700 * 109.47195 * 185.97038 * 11 8 7 13 13 H 1.08005 * 119.99963 * 5.18213 * 12 11 8 14 14 C 1.37874 * 119.99942 * 185.18413 * 12 11 8 15 15 N 1.31512 * 120.00012 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00060 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47467 * 89.99496 * 16 14 12 18 18 H 1.48501 * 109.47067 * 210.00014 * 16 14 12 19 19 H 1.48504 * 109.46902 * 329.99928 * 16 14 12 20 20 C 1.38707 * 119.93981 * 359.46531 * 6 5 4 21 21 O 1.35905 * 120.05619 * 180.27597 * 20 6 5 22 22 C 1.38123 * 119.97034 * 270.02369 * 3 2 1 23 23 H 1.08998 * 109.47096 * 59.99594 * 1 2 3 24 24 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46471 * 300.00288 * 1 2 3 26 26 H 1.09004 * 109.46942 * 239.99595 * 2 1 3 27 27 H 1.09005 * 109.46971 * 120.00026 * 2 1 3 28 28 H 1.07997 * 119.94700 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.96771 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.46848 * 27.31667 * 7 6 5 31 31 H 1.09002 * 109.46587 * 147.31365 * 7 6 5 32 32 H 1.08995 * 109.47160 * 56.79986 * 9 8 7 33 33 H 1.08999 * 109.46900 * 176.79863 * 9 8 7 34 34 H 1.09007 * 109.46855 * 181.88330 * 10 9 8 35 35 H 1.08999 * 109.47489 * 301.88049 * 10 9 8 36 36 H 1.08996 * 109.47441 * 61.88359 * 10 9 8 37 37 H 1.09001 * 109.47027 * 305.97142 * 11 8 7 38 38 H 1.09001 * 109.46775 * 65.96914 * 11 8 7 39 39 H 0.97005 * 119.99677 * 180.02562 * 15 14 12 40 40 H 0.96693 * 113.99921 * 263.53381 * 21 20 6 41 41 H 1.08001 * 120.02800 * 359.97202 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2627 2.0721 1.1979 5 6 2.7231 3.3756 1.2012 6 6 2.9492 4.0328 0.0070 7 6 3.4450 5.4559 0.0114 8 7 2.2996 6.3736 -0.0490 9 6 1.6870 6.3639 -1.3841 10 6 2.6969 6.8773 -2.4123 11 6 2.6943 7.7344 0.3393 12 6 1.4712 8.6120 0.4073 13 1 0.4901 8.1829 0.2669 14 6 1.6046 9.9629 0.6489 15 7 0.5372 10.7289 0.7078 16 14 3.3015 10.7053 0.8911 17 1 3.8441 11.1390 -0.4215 18 1 3.2043 11.8771 1.7981 19 1 4.2053 9.6899 1.4891 20 6 2.7243 3.3797 -1.1959 21 8 2.9513 4.0220 -2.3719 22 6 2.2620 2.0714 -1.1965 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0826 1.5617 2.1324 29 1 2.9018 3.8823 2.1381 30 1 4.0109 5.6405 0.9245 31 1 4.0875 5.6193 -0.8537 32 1 1.3920 5.3466 -1.6411 33 1 0.8079 7.0083 -1.3851 34 1 2.2316 6.9017 -3.3977 35 1 3.0171 7.8821 -2.1368 36 1 3.5614 6.2139 -2.4351 37 1 3.1773 7.7078 1.3161 38 1 3.3889 8.1356 -0.3987 39 1 0.6312 11.6794 0.8774 40 1 2.1599 4.4156 -2.7641 41 1 2.0820 1.5622 -2.1318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236788524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:27 Heat of formation + Delta-G solvation = -39.490851 kcal Electronic energy + Delta-G solvation = -20236.140728 eV Core-core repulsion = 17308.180648 eV Total energy + Delta-G solvation = -2927.960080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21538 -38.80411 -37.77365 -35.08569 -34.51414 -31.67489 -31.20800 -30.77020 -28.79635 -26.38048 -24.84228 -23.72578 -23.55839 -21.77515 -20.76615 -19.10762 -18.69643 -17.33132 -17.01374 -16.65541 -16.31643 -16.02842 -15.70610 -15.03209 -14.70366 -14.59149 -14.48445 -14.36296 -14.07260 -13.61699 -13.30495 -13.18635 -12.87371 -12.85538 -12.54803 -12.49225 -12.38713 -12.15549 -12.00043 -11.84544 -11.73162 -11.53862 -11.41645 -11.12420 -10.77457 -9.66591 -9.37763 -8.91795 -8.27737 -6.30054 0.34422 0.43950 1.33164 1.34999 1.45815 2.33909 2.66029 3.06325 3.25587 3.48032 3.83737 3.92306 4.07725 4.19630 4.24684 4.36954 4.41779 4.51729 4.57343 4.59440 4.64908 4.71598 4.75204 4.83270 4.92743 4.99835 5.07129 5.11915 5.14745 5.19224 5.28665 5.42680 5.47179 5.48280 5.54646 5.66040 5.71778 5.96442 6.01960 6.38952 6.65858 6.75961 6.77865 7.33516 8.88847 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.004703 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.301564 B = 5952.531821 C = 6154.841455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.072 4.072 4 C -0.130 4.130 5 C -0.096 4.096 6 C -0.110 4.110 7 C 0.089 3.911 8 N -0.533 5.533 9 C 0.065 3.935 10 C -0.184 4.184 11 C 0.170 3.830 12 C -0.509 4.509 13 H 0.038 0.962 14 C 0.011 3.989 15 N -0.947 5.947 16 Si 0.942 3.058 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.252 1.252 20 C 0.101 3.899 21 O -0.504 6.504 22 C -0.153 4.153 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.023 0.977 38 H -0.005 1.005 39 H 0.266 0.734 40 H 0.395 0.605 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.945 -21.015 -3.478 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.073 4.073 4 C -0.148 4.148 5 C -0.115 4.115 6 C -0.111 4.111 7 C -0.038 4.038 8 N -0.256 5.256 9 C -0.062 4.062 10 C -0.243 4.243 11 C 0.043 3.957 12 C -0.547 4.547 13 H 0.056 0.944 14 C -0.186 4.186 15 N -0.588 5.588 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.175 1.175 20 C 0.057 3.943 21 O -0.318 6.318 22 C -0.172 4.172 23 H 0.068 0.932 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.161 0.839 29 H 0.144 0.856 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.013 0.987 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.106 -21.159 -3.022 21.975 hybrid contribution 0.411 1.634 -0.467 1.748 sum 5.517 -19.525 -3.489 20.587 Atomic orbital electron populations 1.21746 0.94366 1.02466 1.01775 1.20580 0.96342 0.90826 1.03958 1.20050 0.97691 0.97405 0.92117 1.21262 1.00361 0.94404 0.98749 1.21097 0.98155 0.95022 0.97220 1.20102 1.02245 0.95297 0.93449 1.20966 0.92273 0.89243 1.01314 1.62133 1.28368 1.08234 1.26872 1.21989 0.97429 0.99684 0.87143 1.22369 1.00949 1.00984 0.99976 1.19978 0.94780 0.86270 0.94707 1.21190 0.93377 0.92414 1.47754 0.94387 1.25766 1.00593 0.97527 0.94722 1.70043 1.31096 1.06040 1.51667 0.85792 0.80317 0.78494 0.78818 1.19363 1.20728 1.17528 1.18408 0.99411 0.91575 0.84939 1.84804 1.38648 1.73381 1.34964 1.21452 1.02027 0.94319 0.99376 0.93229 0.90781 0.93133 0.90039 0.89661 0.83913 0.85566 0.90985 0.93331 0.91021 0.93089 0.90754 0.94475 0.90914 0.95904 0.98724 0.92499 0.74501 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.90 71.98 0.71 -1.38 16 2 C -0.08 -1.17 6.06 29.85 0.18 -0.99 16 3 C -0.07 -1.53 5.13 -19.88 -0.10 -1.63 16 4 C -0.13 -2.96 9.70 22.28 0.22 -2.75 16 5 C -0.10 -2.68 9.69 22.25 0.22 -2.47 16 6 C -0.11 -3.40 5.13 -19.77 -0.10 -3.50 16 7 C 0.09 3.13 4.84 85.56 0.41 3.54 16 8 N -0.53 -22.22 4.68 -905.39 -4.23 -26.45 16 9 C 0.07 2.47 5.20 86.30 0.45 2.92 16 10 C -0.18 -6.21 8.22 71.98 0.59 -5.62 16 11 C 0.17 8.19 3.47 85.56 0.30 8.49 16 12 C -0.51 -29.46 8.91 25.60 0.23 -29.23 16 13 H 0.04 2.46 7.28 -2.91 -0.02 2.44 16 14 C 0.01 0.65 5.47 84.65 0.46 1.12 16 15 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 16 Si 0.94 44.42 27.37 68.60 1.88 46.29 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.25 -11.12 6.69 99.48 0.67 -10.46 16 20 C 0.10 2.83 5.74 22.51 0.13 2.96 16 21 O -0.50 -13.43 10.17 -92.48 -0.94 -14.37 16 22 C -0.15 -3.59 9.64 22.37 0.22 -3.37 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 27 H 0.08 1.04 8.09 -2.38 -0.02 1.02 16 28 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 29 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 30 H 0.07 2.48 7.79 -2.39 -0.02 2.46 16 31 H 0.05 1.69 5.45 -2.39 -0.01 1.67 16 32 H 0.07 2.29 4.40 -2.39 -0.01 2.28 16 33 H 0.05 2.28 6.67 -2.39 -0.02 2.26 16 34 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.04 1.46 6.28 -2.39 -0.01 1.44 16 36 H 0.07 2.28 4.95 -2.39 -0.01 2.27 16 37 H 0.02 1.11 7.37 -2.39 -0.02 1.10 16 38 H 0.00 -0.23 5.32 -2.39 -0.01 -0.24 16 39 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 40 H 0.39 8.78 6.22 -74.06 -0.46 8.32 16 41 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -67.45 317.12 1.44 -66.01 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.53 Total: 19.51 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 3.91 Total: -31.90 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -3.93 Total: -85.54 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.94 Total: -14.37 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.29 kcal Total: -67.45 1.44 -66.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236788524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.523 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds