Wall clock time and date at job start Mon Mar 30 2020 00:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47328 * 2 1 4 4 C 1.50700 * 109.47159 * 119.99841 * 2 1 3 5 5 C 1.38288 * 119.97531 * 300.02089 * 4 2 1 6 6 C 1.38241 * 120.11605 * 179.76883 * 5 4 2 7 7 C 1.38170 * 120.05287 * 0.46267 * 6 5 4 8 8 C 1.50703 * 120.02679 * 179.79194 * 7 6 5 9 9 N 1.46899 * 109.47107 * 259.72343 * 8 7 6 10 10 C 1.46902 * 111.00255 * 293.95458 * 9 8 7 11 11 C 1.46901 * 111.00103 * 169.99758 * 9 8 7 12 12 C 1.50696 * 109.47399 * 190.00043 * 11 9 8 13 13 H 1.08005 * 119.99725 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00189 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99790 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00051 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47235 * 89.99847 * 16 14 12 18 18 H 1.48498 * 109.47219 * 209.99790 * 16 14 12 19 19 H 1.48501 * 109.46836 * 329.99929 * 16 14 12 20 20 C 1.38706 * 119.94369 * 359.51815 * 7 6 5 21 21 O 1.35901 * 120.05610 * 180.22829 * 20 7 6 22 22 C 1.38127 * 119.97413 * 119.99892 * 4 2 1 23 23 H 1.09003 * 109.46698 * 299.99997 * 1 2 3 24 24 H 1.08997 * 109.47230 * 60.00193 * 1 2 3 25 25 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47165 * 239.99769 * 2 1 3 27 27 H 1.08997 * 109.46808 * 300.00066 * 3 2 1 28 28 H 1.09001 * 109.47187 * 59.99782 * 3 2 1 29 29 H 1.08998 * 109.47320 * 180.02562 * 3 2 1 30 30 H 1.08005 * 119.94153 * 0.02562 * 5 4 2 31 31 H 1.07999 * 119.97619 * 180.23052 * 6 5 4 32 32 H 1.09002 * 109.47152 * 139.72431 * 8 7 6 33 33 H 1.09001 * 109.46980 * 19.72531 * 8 7 6 34 34 H 1.09005 * 109.46528 * 59.99744 * 10 9 8 35 35 H 1.09000 * 109.46785 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47044 * 300.00388 * 10 9 8 37 37 H 1.08998 * 109.47407 * 310.00536 * 11 9 8 38 38 H 1.09007 * 109.46608 * 69.99971 * 11 9 8 39 39 H 0.96994 * 119.99598 * 179.97438 * 15 14 12 40 40 H 0.96708 * 113.99773 * 89.99938 * 21 20 7 41 41 H 1.08000 * 120.02280 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6976 -0.2377 2.4862 6 6 2.1529 -0.8898 3.6169 7 6 2.9517 -2.0105 3.4949 8 6 3.4516 -2.7183 4.7279 9 7 4.8415 -2.3219 4.9905 10 6 5.7351 -2.7997 3.9269 11 6 5.2860 -2.8008 6.3062 12 6 6.6143 -2.1754 6.6460 13 1 7.0814 -1.4903 5.9540 14 6 7.2332 -2.4778 7.8404 15 7 6.6642 -3.3117 8.6832 16 14 8.8794 -1.7020 8.2619 17 1 8.6540 -0.4261 8.9875 18 1 9.6580 -2.6294 9.1215 19 1 9.6348 -1.4338 7.0118 20 6 3.2886 -2.4869 2.2365 21 8 4.0704 -3.5918 2.1138 22 6 2.8264 -1.8334 1.1032 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.0759 0.6401 2.5837 31 1 1.8870 -0.5209 4.5965 32 1 3.4043 -3.7961 4.5725 33 1 2.8290 -2.4465 5.5803 34 1 5.4244 -2.3738 2.9728 35 1 6.7576 -2.4921 4.1460 36 1 5.6861 -3.8872 3.8724 37 1 4.5502 -2.5240 7.0612 38 1 5.3907 -3.8856 6.2815 39 1 7.0998 -3.5247 9.5232 40 1 3.5755 -4.4219 2.0784 41 1 3.0876 -2.2021 0.1222 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237046397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:48 Heat of formation + Delta-G solvation = -26.997932 kcal Electronic energy + Delta-G solvation = -19842.181144 eV Core-core repulsion = 16914.762798 eV Total energy + Delta-G solvation = -2927.418346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06728 -37.44438 -36.17129 -34.71415 -32.51758 -30.62969 -29.54853 -27.29768 -27.03084 -26.30909 -23.97253 -22.63517 -21.90214 -20.34770 -19.89321 -17.57751 -16.50295 -16.06973 -15.75151 -15.25099 -14.59727 -14.44679 -14.12587 -13.80654 -13.58664 -13.55335 -13.34973 -12.84192 -12.46343 -11.99454 -11.89037 -11.86686 -11.59808 -11.41300 -11.29993 -11.11810 -10.90116 -10.79123 -10.74198 -10.56222 -10.26766 -10.04973 -9.77691 -9.16818 -8.60785 -8.40563 -8.24797 -7.10856 -5.98268 -3.98819 1.42134 1.50974 3.35572 3.40927 3.45608 3.75423 4.31206 4.47904 4.65986 4.74061 5.04294 5.08766 5.16752 5.27306 5.33039 5.37646 5.44591 5.45488 5.53604 5.66453 5.75376 5.81688 5.91534 5.96801 6.07761 6.10515 6.18117 6.28173 6.48209 6.56921 6.61863 6.66950 6.84242 6.97808 7.09654 7.35634 7.41636 7.84417 7.87093 8.15234 8.30267 8.62558 9.09264 9.64999 11.12762 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032503 B = 0.004010 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.252656 B = 6980.633267 C = 7167.856353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.074 4.074 5 C -0.125 4.125 6 C -0.088 4.088 7 C -0.089 4.089 8 C 0.096 3.904 9 N -0.534 5.534 10 C 0.046 3.954 11 C 0.193 3.807 12 C -0.503 4.503 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.113 3.887 21 O -0.487 6.487 22 C -0.147 4.147 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.012 0.988 37 H 0.028 0.972 38 H -0.010 1.010 39 H 0.260 0.740 40 H 0.378 0.622 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.873 3.858 -16.759 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.074 4.074 5 C -0.143 4.143 6 C -0.106 4.106 7 C -0.090 4.090 8 C -0.032 4.032 9 N -0.259 5.259 10 C -0.102 4.102 11 C 0.068 3.932 12 C -0.542 4.542 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.541 5.541 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.068 3.932 21 O -0.297 6.297 22 C -0.165 4.165 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.046 0.954 38 H 0.008 0.992 39 H 0.070 0.930 40 H 0.233 0.767 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.347 4.681 -16.551 21.173 hybrid contribution 0.573 -0.937 0.397 1.168 sum -11.774 3.744 -16.155 20.338 Atomic orbital electron populations 1.21852 0.94478 1.01897 1.01799 1.20088 0.95772 0.96054 0.95358 1.21859 1.01484 0.95071 1.01755 1.19603 0.97769 0.95391 0.94625 1.20900 1.01420 1.00210 0.91798 1.20959 0.96734 0.94219 0.98732 1.20344 0.96778 0.97185 0.94651 1.20894 0.92915 0.95729 0.93660 1.62167 0.99052 1.59964 1.04684 1.22280 0.97458 0.96653 0.93858 1.19741 0.96119 0.93502 0.83866 1.21176 1.03904 1.26151 1.02980 0.91890 1.24987 0.98037 0.95376 0.96291 1.69961 1.39064 1.35114 1.09921 0.86494 0.83614 0.78980 0.78312 1.20644 1.21348 1.19855 1.18243 0.93078 0.90293 0.91592 1.85101 1.33746 1.15155 1.95722 1.21206 0.99642 0.97612 0.98082 0.92369 0.92595 0.92628 0.90743 0.92617 0.92331 0.92397 0.86299 0.85625 0.95218 0.90842 0.92305 0.91831 0.96918 0.95411 0.99220 0.92999 0.76674 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.01 37.16 0.33 -0.80 16 2 C -0.05 -0.51 3.09 -91.77 -0.28 -0.79 16 3 C -0.14 -1.27 9.01 37.16 0.33 -0.94 16 4 C -0.07 -0.88 4.78 -104.64 -0.50 -1.38 16 5 C -0.13 -1.56 8.71 -39.56 -0.34 -1.91 16 6 C -0.09 -1.28 9.67 -39.61 -0.38 -1.66 16 7 C -0.09 -1.44 5.17 -104.47 -0.54 -1.98 16 8 C 0.10 1.82 4.99 -4.98 -0.02 1.79 16 9 N -0.53 -12.28 4.74 -245.82 -1.17 -13.45 16 10 C 0.05 0.99 7.86 60.07 0.47 1.47 16 11 C 0.19 5.22 4.72 -4.98 -0.02 5.19 16 12 C -0.50 -14.67 8.46 -34.44 -0.29 -14.96 16 13 H 0.06 1.84 7.12 -52.48 -0.37 1.46 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 16 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.11 1.68 5.43 -39.22 -0.21 1.47 16 21 O -0.49 -6.97 9.55 -19.43 -0.19 -7.16 16 22 C -0.15 -1.91 9.61 -39.43 -0.38 -2.29 16 23 H 0.06 0.46 7.38 -51.93 -0.38 0.07 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.12 1.24 7.10 -52.48 -0.37 0.87 16 31 H 0.13 1.73 8.03 -52.49 -0.42 1.30 16 32 H 0.03 0.55 7.83 -51.93 -0.41 0.14 16 33 H 0.07 1.36 7.79 -51.93 -0.40 0.95 16 34 H 0.06 1.20 4.99 -51.93 -0.26 0.94 16 35 H 0.06 1.49 6.76 -51.93 -0.35 1.14 16 36 H 0.01 0.27 7.71 -51.93 -0.40 -0.13 16 37 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 38 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.38 3.72 9.06 45.56 0.41 4.13 16 41 H 0.12 1.38 7.94 -52.49 -0.42 0.96 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -32.11 328.31 -8.46 -40.57 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.83 Total: -0.21 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.94 Total: -15.32 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.43 Total: -40.01 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.19 Total: -7.16 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.11 -8.46 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237046397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.572 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds