Wall clock time and date at job start Mon Mar 30 2020 00:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47328 * 2 1 4 4 C 1.50700 * 109.47159 * 119.99841 * 2 1 3 5 5 C 1.38288 * 119.97531 * 300.02089 * 4 2 1 6 6 C 1.38241 * 120.11605 * 179.76883 * 5 4 2 7 7 C 1.38170 * 120.05287 * 0.46267 * 6 5 4 8 8 C 1.50703 * 120.02679 * 179.79194 * 7 6 5 9 9 N 1.46899 * 109.47107 * 259.72343 * 8 7 6 10 10 C 1.46902 * 111.00255 * 293.95458 * 9 8 7 11 11 C 1.46901 * 111.00103 * 169.99758 * 9 8 7 12 12 C 1.50696 * 109.47399 * 190.00043 * 11 9 8 13 13 H 1.08005 * 119.99725 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00189 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99790 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00051 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47235 * 89.99847 * 16 14 12 18 18 H 1.48498 * 109.47219 * 209.99790 * 16 14 12 19 19 H 1.48501 * 109.46836 * 329.99929 * 16 14 12 20 20 C 1.38706 * 119.94369 * 359.51815 * 7 6 5 21 21 O 1.35901 * 120.05610 * 180.22829 * 20 7 6 22 22 C 1.38127 * 119.97413 * 119.99892 * 4 2 1 23 23 H 1.09003 * 109.46698 * 299.99997 * 1 2 3 24 24 H 1.08997 * 109.47230 * 60.00193 * 1 2 3 25 25 H 1.09001 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47165 * 239.99769 * 2 1 3 27 27 H 1.08997 * 109.46808 * 300.00066 * 3 2 1 28 28 H 1.09001 * 109.47187 * 59.99782 * 3 2 1 29 29 H 1.08998 * 109.47320 * 180.02562 * 3 2 1 30 30 H 1.08005 * 119.94153 * 0.02562 * 5 4 2 31 31 H 1.07999 * 119.97619 * 180.23052 * 6 5 4 32 32 H 1.09002 * 109.47152 * 139.72431 * 8 7 6 33 33 H 1.09001 * 109.46980 * 19.72531 * 8 7 6 34 34 H 1.09005 * 109.46528 * 59.99744 * 10 9 8 35 35 H 1.09000 * 109.46785 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47044 * 300.00388 * 10 9 8 37 37 H 1.08998 * 109.47407 * 310.00536 * 11 9 8 38 38 H 1.09007 * 109.46608 * 69.99971 * 11 9 8 39 39 H 0.96994 * 119.99598 * 179.97438 * 15 14 12 40 40 H 0.96708 * 113.99773 * 89.99938 * 21 20 7 41 41 H 1.08000 * 120.02280 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6976 -0.2377 2.4862 6 6 2.1529 -0.8898 3.6169 7 6 2.9517 -2.0105 3.4949 8 6 3.4516 -2.7183 4.7279 9 7 4.8415 -2.3219 4.9905 10 6 5.7351 -2.7997 3.9269 11 6 5.2860 -2.8008 6.3062 12 6 6.6143 -2.1754 6.6460 13 1 7.0814 -1.4903 5.9540 14 6 7.2332 -2.4778 7.8404 15 7 6.6642 -3.3117 8.6832 16 14 8.8794 -1.7020 8.2619 17 1 8.6540 -0.4261 8.9875 18 1 9.6580 -2.6294 9.1215 19 1 9.6348 -1.4338 7.0118 20 6 3.2886 -2.4869 2.2365 21 8 4.0704 -3.5918 2.1138 22 6 2.8264 -1.8334 1.1032 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.0759 0.6401 2.5837 31 1 1.8870 -0.5209 4.5965 32 1 3.4043 -3.7961 4.5725 33 1 2.8290 -2.4465 5.5803 34 1 5.4244 -2.3738 2.9728 35 1 6.7576 -2.4921 4.1460 36 1 5.6861 -3.8872 3.8724 37 1 4.5502 -2.5240 7.0612 38 1 5.3907 -3.8856 6.2815 39 1 7.0998 -3.5247 9.5232 40 1 3.5755 -4.4219 2.0784 41 1 3.0876 -2.2021 0.1222 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237046397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:47 Heat of formation + Delta-G solvation = -48.018796 kcal Electronic energy + Delta-G solvation = -19843.092677 eV Core-core repulsion = 16914.762798 eV Total energy + Delta-G solvation = -2928.329879 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17800 -38.57225 -37.74058 -35.76791 -34.62298 -31.84266 -30.72980 -29.04791 -27.92372 -27.82733 -25.69250 -23.70855 -23.28728 -21.88975 -21.03817 -18.67385 -18.53169 -17.23608 -16.98390 -16.78151 -16.26558 -15.71633 -15.57314 -15.20916 -14.80345 -14.65923 -14.29336 -14.22799 -13.83646 -13.42969 -13.18746 -13.02827 -12.97513 -12.73773 -12.66235 -12.55844 -12.48740 -12.18510 -12.01665 -11.93600 -11.80149 -11.54065 -11.34977 -11.10155 -10.63109 -9.68009 -9.39714 -8.95717 -8.21786 -6.32166 0.34266 0.44152 1.39561 1.41568 1.52921 2.39354 2.68130 3.10123 3.31074 3.55479 3.76931 3.87700 4.03080 4.12867 4.28950 4.37343 4.48804 4.51723 4.63109 4.67736 4.72800 4.83455 4.86921 4.94936 5.04877 5.06894 5.08695 5.16529 5.19865 5.23672 5.31544 5.35663 5.44579 5.51396 5.63428 5.67239 5.72434 6.00130 6.03340 6.33330 6.61788 6.83570 6.88715 7.37352 8.89269 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032503 B = 0.004010 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.252656 B = 6980.633267 C = 7167.856353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.065 4.065 5 C -0.124 4.124 6 C -0.097 4.097 7 C -0.116 4.116 8 C 0.100 3.900 9 N -0.543 5.543 10 C 0.059 3.941 11 C 0.208 3.792 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.971 3.029 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.266 1.266 20 C 0.108 3.892 21 O -0.502 6.502 22 C -0.151 4.151 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.142 0.858 31 H 0.126 0.874 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.012 0.988 37 H 0.005 0.995 38 H -0.038 1.038 39 H 0.265 0.735 40 H 0.397 0.603 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.179 5.209 -18.607 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.202 4.202 4 C -0.065 4.065 5 C -0.142 4.142 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.027 4.027 9 N -0.267 5.267 10 C -0.088 4.088 11 C 0.082 3.918 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.795 3.205 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.191 1.191 20 C 0.063 3.937 21 O -0.315 6.315 22 C -0.169 4.169 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.160 0.840 31 H 0.144 0.856 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.023 0.977 38 H -0.021 1.021 39 H 0.074 0.926 40 H 0.255 0.745 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.676 6.024 -18.420 23.158 hybrid contribution 0.568 -1.369 0.893 1.730 sum -12.109 4.656 -17.527 21.806 Atomic orbital electron populations 1.21840 0.93201 1.02062 1.02710 1.20165 0.96745 0.96066 0.94184 1.21864 1.00734 0.94831 1.02728 1.19998 0.96257 0.94624 0.95613 1.21134 1.01201 1.00570 0.91285 1.21086 0.96714 0.94011 0.99748 1.20168 0.99114 0.98599 0.93870 1.20848 0.90386 0.96269 0.95244 1.62081 1.01319 1.60123 1.03184 1.22144 0.96063 0.96569 0.94074 1.19398 0.95140 0.91548 0.85709 1.21445 1.04916 1.26522 1.03451 0.92326 1.25920 1.02057 0.95670 0.95947 1.70081 1.40842 1.36134 1.10393 0.85362 0.78586 0.78256 0.78293 1.19649 1.20449 1.19085 1.18358 0.93094 0.90611 0.91639 1.84998 1.34701 1.16088 1.95688 1.21425 0.99515 0.97749 0.98200 0.92290 0.90935 0.92859 0.89824 0.90765 0.92340 0.93580 0.84008 0.85586 0.95124 0.91340 0.90577 0.94006 0.96973 0.97682 1.02078 0.92586 0.74519 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.01 71.98 0.65 -1.13 16 2 C -0.05 -0.82 3.09 -11.54 -0.04 -0.86 16 3 C -0.14 -2.12 9.01 71.98 0.65 -1.47 16 4 C -0.06 -1.39 4.78 -19.88 -0.10 -1.48 16 5 C -0.12 -2.86 8.71 22.28 0.19 -2.67 16 6 C -0.10 -2.77 9.67 22.25 0.22 -2.56 16 7 C -0.12 -3.78 5.17 -19.77 -0.10 -3.88 16 8 C 0.10 3.90 4.99 85.56 0.43 4.32 16 9 N -0.54 -25.70 4.74 -931.63 -4.42 -30.12 16 10 C 0.06 2.63 7.86 127.69 1.00 3.64 16 11 C 0.21 11.76 4.72 85.56 0.40 12.16 16 12 C -0.53 -31.33 8.46 25.60 0.22 -31.12 16 13 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 14 C 0.00 0.12 5.46 84.66 0.46 0.58 16 15 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 16 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 C 0.11 3.11 5.43 22.50 0.12 3.23 16 21 O -0.50 -13.97 9.55 -92.44 -0.88 -14.85 16 22 C -0.15 -3.61 9.61 22.37 0.21 -3.40 16 23 H 0.06 0.74 7.38 -2.39 -0.02 0.72 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 1.17 7.87 -2.39 -0.02 1.16 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.86 7.39 -2.39 -0.02 0.84 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.14 2.57 7.10 -2.91 -0.02 2.55 16 31 H 0.13 3.47 8.03 -2.91 -0.02 3.45 16 32 H 0.03 1.17 7.83 -2.39 -0.02 1.15 16 33 H 0.07 2.66 7.79 -2.39 -0.02 2.64 16 34 H 0.08 3.10 4.99 -2.38 -0.01 3.09 16 35 H 0.04 1.99 6.76 -2.39 -0.02 1.98 16 36 H 0.01 0.52 7.71 -2.39 -0.02 0.50 16 37 H 0.01 0.30 7.93 -2.39 -0.02 0.29 16 38 H -0.04 -2.34 8.12 -2.38 -0.02 -2.36 16 39 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.40 7.50 9.06 -74.05 -0.67 6.83 16 41 H 0.14 2.79 7.94 -2.91 -0.02 2.77 16 Total: -1.00 -69.39 328.31 1.67 -67.72 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.34 Total: 11.50 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.32 Total: -24.63 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -4.13 Total: -87.46 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.88 Total: -14.85 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -69.39 1.67 -67.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237046397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.706 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds