Wall clock time and date at job start Mon Mar 30 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38423 * 120.44710 * 2 1 4 4 C 1.38783 * 118.48281 * 180.28406 * 3 2 1 5 5 C 1.50706 * 120.35447 * 179.73952 * 4 3 2 6 6 C 1.53002 * 109.46925 * 269.72388 * 5 4 3 7 7 C 1.50696 * 109.47300 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99822 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00339 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99769 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00300 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46692 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47025 * 120.00050 * 11 9 7 14 14 H 1.48500 * 109.46740 * 240.00408 * 11 9 7 15 15 C 1.38093 * 119.28967 * 359.46132 * 4 3 2 16 16 N 1.31932 * 120.83134 * 0.25546 * 15 4 3 17 17 C 1.32273 * 121.64977 * 0.02562 * 16 15 4 18 18 O 1.35675 * 119.68588 * 180.02562 * 17 16 15 19 19 C 1.42903 * 116.99964 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.47414 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47119 * 64.99518 * 20 19 18 22 22 C 1.52999 * 109.47119 * 184.99665 * 20 19 18 23 23 H 1.08992 * 109.47402 * 270.27758 * 1 2 3 24 24 H 1.09003 * 109.46938 * 30.27538 * 1 2 3 25 25 H 1.08995 * 109.47303 * 150.27381 * 1 2 3 26 26 H 1.07997 * 120.75920 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47318 * 29.71621 * 5 4 3 28 28 H 1.09000 * 109.47161 * 149.72252 * 5 4 3 29 29 H 1.09004 * 109.46930 * 299.99901 * 6 5 4 30 30 H 1.09004 * 109.47059 * 59.99503 * 6 5 4 31 31 H 0.97000 * 120.00540 * 179.97438 * 10 9 7 32 32 H 1.07995 * 119.58279 * 180.27273 * 15 4 3 33 33 H 1.09008 * 109.46741 * 299.99899 * 19 18 17 34 34 H 1.09000 * 109.47305 * 59.99755 * 19 18 17 35 35 H 1.09004 * 109.46865 * 304.99734 * 20 19 18 36 36 H 1.08997 * 109.46743 * 60.00364 * 21 20 19 37 37 H 1.08992 * 109.47264 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47403 * 300.00187 * 21 20 19 39 39 H 1.08998 * 109.47255 * 60.00289 * 22 20 19 40 40 H 1.09003 * 109.46576 * 179.97438 * 22 20 19 41 41 H 1.08991 * 109.47091 * 299.99912 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1933 0.0000 4 6 3.5954 1.1458 -0.0060 5 6 4.4011 2.4194 -0.0122 6 6 4.6732 2.8437 -1.4568 7 6 5.4794 4.1169 -1.4631 8 1 5.7691 4.5771 -0.5300 9 6 5.8481 4.6936 -2.6599 10 7 5.4957 4.1328 -3.7961 11 14 6.8480 6.2714 -2.6676 12 1 7.1139 6.6957 -1.2696 13 1 8.1369 6.0372 -3.3670 14 1 6.0885 7.3352 -3.3724 15 6 4.2294 -0.0810 -0.0005 16 7 3.5333 -1.2018 0.0053 17 6 2.2106 -1.1974 0.0057 18 8 1.5347 -2.3738 0.0123 19 6 2.3156 -3.5706 0.0193 20 6 1.3863 -4.7859 0.0268 21 6 0.5918 -4.8285 -1.2801 22 6 2.2180 -6.0632 0.1599 23 1 -0.3634 0.0050 1.0276 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5095 26 1 1.6882 2.1398 0.0004 27 1 3.8434 3.2046 0.4981 28 1 5.3477 2.2530 0.5021 29 1 5.2309 2.0584 -1.9672 30 1 3.7266 3.0100 -1.9711 31 1 5.7547 4.5387 -4.6382 32 1 5.3085 -0.1235 -0.0007 33 1 2.9446 -3.5991 -0.8705 34 1 2.9444 -3.5890 0.9095 35 1 0.6975 -4.7115 0.8684 36 1 1.2805 -4.9030 -2.1216 37 1 -0.0706 -5.6941 -1.2746 38 1 -0.0008 -3.9186 -1.3749 39 1 2.7840 -6.0328 1.0909 40 1 1.5558 -6.9290 0.1657 41 1 2.9067 -6.1376 -0.6816 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:44 Heat of formation + Delta-G solvation = -42.711418 kcal Electronic energy + Delta-G solvation = -19250.955254 eV Core-core repulsion = 16322.855520 eV Total energy + Delta-G solvation = -2928.099734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45271 -38.21554 -35.49401 -34.07090 -33.37926 -32.15260 -29.02931 -27.38372 -27.09141 -26.55195 -24.91578 -22.72265 -21.87613 -20.36613 -19.91922 -18.17518 -16.84856 -16.37245 -16.15534 -14.91614 -14.53264 -14.43501 -14.26576 -13.95650 -13.56671 -13.08265 -12.92506 -12.74956 -12.60887 -12.57707 -12.43121 -12.27347 -12.13304 -11.54850 -11.45237 -11.29325 -11.02660 -10.94713 -10.85015 -10.61888 -10.51488 -9.95684 -9.74949 -9.27801 -9.14758 -9.01889 -8.37355 -7.79891 -6.01714 -4.05081 1.48188 1.68633 3.17300 3.29973 3.37616 3.41426 4.10525 4.44622 4.59988 4.65110 4.67611 4.89231 5.13834 5.18656 5.33521 5.34013 5.35959 5.41098 5.42340 5.56792 5.61656 5.66982 5.73136 5.74327 5.76353 5.84023 5.87755 6.07096 6.12007 6.17827 6.33890 6.46597 6.59939 6.77036 6.82058 7.04077 7.52339 7.65293 7.77246 7.97577 8.18979 8.37929 9.02247 9.59341 11.09280 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033419 B = 0.003411 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.645654 B = 8205.837255 C = 8446.524722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.155 4.155 3 C -0.048 4.048 4 C -0.136 4.136 5 C -0.071 4.071 6 C 0.029 3.971 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.057 3.943 10 N -0.894 5.894 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.127 3.873 16 N -0.537 5.537 17 C 0.298 3.702 18 O -0.307 6.307 19 C 0.077 3.923 20 C -0.096 4.096 21 C -0.146 4.146 22 C -0.144 4.144 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.138 0.862 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.157 0.843 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.487 -15.716 8.307 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C -0.074 4.074 4 C -0.138 4.138 5 C -0.109 4.109 6 C -0.008 4.008 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.533 5.533 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.029 4.029 16 N -0.259 5.259 17 C 0.119 3.881 18 O -0.215 6.215 19 C 0.001 3.999 20 C -0.115 4.115 21 C -0.204 4.204 22 C -0.202 4.202 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.156 0.844 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.174 0.826 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.316 -16.578 8.121 20.678 hybrid contribution 0.471 1.596 -0.239 1.681 sum -8.846 -14.983 7.881 19.101 Atomic orbital electron populations 1.20522 0.90165 1.02740 1.01960 1.19839 0.97270 0.90716 1.07912 1.21281 0.93606 0.97190 0.95302 1.21199 0.94514 0.97819 1.00314 1.20713 0.97351 0.90997 1.01799 1.19097 0.96926 0.96119 0.88687 1.21279 1.33808 1.08572 0.92373 0.92479 1.25031 0.96191 0.97541 0.95678 1.69980 1.46314 1.39728 0.97279 0.86538 0.79952 0.83437 0.78097 1.19694 1.21007 1.21017 1.22280 0.99657 0.86181 0.94735 1.67258 1.06680 1.32984 1.18971 1.19470 0.87702 0.85558 0.95379 1.86141 1.34817 1.12058 1.88493 1.22629 0.93291 0.81659 1.02318 1.21162 0.97512 0.93211 0.99615 1.21818 1.00035 1.02028 0.96497 1.21760 0.99972 0.96268 1.02187 0.91655 0.91573 0.91297 0.84401 0.92060 0.91945 0.96443 0.96501 0.93015 0.82599 0.91810 0.91998 0.90411 0.92673 0.92720 0.91914 0.92390 0.91965 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.81 36.00 0.35 -0.84 16 2 C -0.15 -2.43 5.91 -104.32 -0.62 -3.05 16 3 C -0.05 -0.81 9.53 -39.31 -0.37 -1.18 16 4 C -0.14 -2.48 5.15 -104.47 -0.54 -3.02 16 5 C -0.07 -1.42 5.31 -27.88 -0.15 -1.56 16 6 C 0.03 0.73 4.95 -27.88 -0.14 0.59 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 11 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 C 0.13 2.23 10.85 -17.56 -0.19 2.04 16 16 N -0.54 -9.37 9.22 -13.33 -0.12 -9.50 16 17 C 0.30 4.94 7.47 -17.12 -0.13 4.82 16 18 O -0.31 -4.49 8.72 -18.73 -0.16 -4.66 16 19 C 0.08 0.94 4.69 37.16 0.17 1.12 16 20 C -0.10 -0.91 3.16 -90.62 -0.29 -1.20 16 21 C -0.15 -1.35 9.09 37.16 0.34 -1.01 16 22 C -0.14 -1.10 9.19 37.16 0.34 -0.76 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.07 0.83 7.55 -51.93 -0.39 0.44 16 26 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 28 H 0.06 1.20 8.09 -51.93 -0.42 0.77 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 33 H 0.06 0.84 8.10 -51.92 -0.42 0.42 16 34 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -30.71 343.07 -8.12 -38.83 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -7.09 Total: -2.80 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.62 Total: -17.38 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.61 Total: -35.60 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.16 Total: -4.66 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.71 -8.12 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.884 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds