Wall clock time and date at job start Mon Mar 30 2020 00:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38423 * 120.44710 * 2 1 4 4 C 1.38783 * 118.48281 * 180.28406 * 3 2 1 5 5 C 1.50706 * 120.35447 * 179.73952 * 4 3 2 6 6 C 1.53002 * 109.46925 * 269.72388 * 5 4 3 7 7 C 1.50696 * 109.47300 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99822 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00339 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99769 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00300 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46692 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47025 * 120.00050 * 11 9 7 14 14 H 1.48500 * 109.46740 * 240.00408 * 11 9 7 15 15 C 1.38093 * 119.28967 * 359.46132 * 4 3 2 16 16 N 1.31932 * 120.83134 * 0.25546 * 15 4 3 17 17 C 1.32273 * 121.64977 * 0.02562 * 16 15 4 18 18 O 1.35675 * 119.68588 * 180.02562 * 17 16 15 19 19 C 1.42903 * 116.99964 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.47414 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47119 * 64.99518 * 20 19 18 22 22 C 1.52999 * 109.47119 * 184.99665 * 20 19 18 23 23 H 1.08992 * 109.47402 * 270.27758 * 1 2 3 24 24 H 1.09003 * 109.46938 * 30.27538 * 1 2 3 25 25 H 1.08995 * 109.47303 * 150.27381 * 1 2 3 26 26 H 1.07997 * 120.75920 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47318 * 29.71621 * 5 4 3 28 28 H 1.09000 * 109.47161 * 149.72252 * 5 4 3 29 29 H 1.09004 * 109.46930 * 299.99901 * 6 5 4 30 30 H 1.09004 * 109.47059 * 59.99503 * 6 5 4 31 31 H 0.97000 * 120.00540 * 179.97438 * 10 9 7 32 32 H 1.07995 * 119.58279 * 180.27273 * 15 4 3 33 33 H 1.09008 * 109.46741 * 299.99899 * 19 18 17 34 34 H 1.09000 * 109.47305 * 59.99755 * 19 18 17 35 35 H 1.09004 * 109.46865 * 304.99734 * 20 19 18 36 36 H 1.08997 * 109.46743 * 60.00364 * 21 20 19 37 37 H 1.08992 * 109.47264 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47403 * 300.00187 * 21 20 19 39 39 H 1.08998 * 109.47255 * 60.00289 * 22 20 19 40 40 H 1.09003 * 109.46576 * 179.97438 * 22 20 19 41 41 H 1.08991 * 109.47091 * 299.99912 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1933 0.0000 4 6 3.5954 1.1458 -0.0060 5 6 4.4011 2.4194 -0.0122 6 6 4.6732 2.8437 -1.4568 7 6 5.4794 4.1169 -1.4631 8 1 5.7691 4.5771 -0.5300 9 6 5.8481 4.6936 -2.6599 10 7 5.4957 4.1328 -3.7961 11 14 6.8480 6.2714 -2.6676 12 1 7.1139 6.6957 -1.2696 13 1 8.1369 6.0372 -3.3670 14 1 6.0885 7.3352 -3.3724 15 6 4.2294 -0.0810 -0.0005 16 7 3.5333 -1.2018 0.0053 17 6 2.2106 -1.1974 0.0057 18 8 1.5347 -2.3738 0.0123 19 6 2.3156 -3.5706 0.0193 20 6 1.3863 -4.7859 0.0268 21 6 0.5918 -4.8285 -1.2801 22 6 2.2180 -6.0632 0.1599 23 1 -0.3634 0.0050 1.0276 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5095 26 1 1.6882 2.1398 0.0004 27 1 3.8434 3.2046 0.4981 28 1 5.3477 2.2530 0.5021 29 1 5.2309 2.0584 -1.9672 30 1 3.7266 3.0100 -1.9711 31 1 5.7547 4.5387 -4.6382 32 1 5.3085 -0.1235 -0.0007 33 1 2.9446 -3.5991 -0.8705 34 1 2.9444 -3.5890 0.9095 35 1 0.6975 -4.7115 0.8684 36 1 1.2805 -4.9030 -2.1216 37 1 -0.0706 -5.6941 -1.2746 38 1 -0.0008 -3.9186 -1.3749 39 1 2.7840 -6.0328 1.0909 40 1 1.5558 -6.9290 0.1657 41 1 2.9067 -6.1376 -0.6816 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:43 Heat of formation + Delta-G solvation = -59.795681 kcal Electronic energy + Delta-G solvation = -19251.696083 eV Core-core repulsion = 16322.855520 eV Total energy + Delta-G solvation = -2928.840563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.72471 -39.38255 -36.51960 -35.76701 -34.60971 -33.98943 -30.72984 -28.20704 -28.04525 -27.74786 -26.67175 -24.02112 -23.55545 -21.55104 -21.12185 -19.38094 -18.51890 -18.09401 -17.25919 -16.51745 -15.94488 -15.62638 -15.35309 -15.26725 -14.63021 -14.60033 -14.32102 -14.01551 -13.96280 -13.69976 -13.53877 -13.45253 -13.10581 -13.00256 -12.86800 -12.71286 -12.31717 -12.24380 -12.04375 -11.81391 -11.74333 -11.61377 -11.47093 -11.21472 -10.59742 -10.50960 -10.46664 -9.15079 -8.18705 -6.30490 0.17238 0.33259 1.41590 1.42050 1.55309 2.04474 2.41949 2.76887 3.14641 3.36513 3.78973 3.86498 3.90066 3.96118 4.09713 4.12177 4.32110 4.40400 4.50316 4.57654 4.63813 4.71661 4.78884 4.81698 4.84933 4.88197 4.96987 4.99538 5.08582 5.16685 5.21155 5.25432 5.34590 5.35819 5.38901 5.51407 5.59850 5.76071 5.85306 6.23092 6.29314 6.85439 6.87670 7.39240 8.92953 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033419 B = 0.003411 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.645654 B = 8205.837255 C = 8446.524722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.156 4.156 3 C -0.052 4.052 4 C -0.155 4.155 5 C -0.054 4.054 6 C 0.035 3.965 7 C -0.540 4.540 8 H 0.066 0.934 9 C -0.002 4.002 10 N -0.935 5.935 11 Si 0.965 3.035 12 H -0.259 1.259 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.117 3.883 16 N -0.548 5.548 17 C 0.289 3.711 18 O -0.305 6.305 19 C 0.073 3.927 20 C -0.091 4.091 21 C -0.146 4.146 22 C -0.142 4.142 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.153 0.847 27 H 0.071 0.929 28 H 0.070 0.930 29 H -0.012 1.012 30 H -0.010 1.010 31 H 0.263 0.737 32 H 0.164 0.836 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 -15.891 9.386 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.159 4.159 3 C -0.078 4.078 4 C -0.157 4.157 5 C -0.092 4.092 6 C -0.002 4.002 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.199 4.199 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.183 1.183 13 H -0.206 1.206 14 H -0.205 1.205 15 C -0.038 4.038 16 N -0.271 5.271 17 C 0.110 3.890 18 O -0.213 6.213 19 C -0.002 4.002 20 C -0.109 4.109 21 C -0.203 4.203 22 C -0.199 4.199 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.171 0.829 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.019 -16.765 9.218 21.597 hybrid contribution 0.632 1.547 -0.582 1.770 sum -9.387 -15.218 8.636 19.857 Atomic orbital electron populations 1.20585 0.87593 1.03506 1.03338 1.20210 0.99133 0.89977 1.06530 1.21510 0.93140 0.98351 0.94759 1.21065 0.95228 0.97053 1.02346 1.20422 0.98364 0.92268 0.98123 1.18943 0.94768 0.94734 0.91728 1.21740 1.33835 1.09367 0.92824 0.91611 1.25996 0.97396 1.01277 0.95266 1.70120 1.47759 1.41627 0.98028 0.85393 0.78097 0.78813 0.78713 1.18264 1.20615 1.20508 1.22424 1.00225 0.86225 0.94883 1.67276 1.07384 1.32866 1.19536 1.19819 0.87658 0.86684 0.94853 1.86159 1.34951 1.12120 1.88097 1.22837 0.93970 0.81842 1.01551 1.21186 0.97271 0.92484 0.99984 1.21814 1.00049 1.02277 0.96142 1.21757 1.00061 0.95772 1.02289 0.89839 0.90337 0.90987 0.82912 0.91080 0.91164 0.99378 0.99194 0.92865 0.81864 0.93029 0.92304 0.89824 0.93148 0.90760 0.93190 0.92068 0.90209 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.11 9.81 71.23 0.70 -1.41 16 2 C -0.16 -4.74 5.91 -19.67 -0.12 -4.86 16 3 C -0.05 -1.71 9.53 22.44 0.21 -1.50 16 4 C -0.15 -5.65 5.15 -19.77 -0.10 -5.75 16 5 C -0.05 -2.16 5.31 29.85 0.16 -2.01 16 6 C 0.04 1.85 4.95 29.85 0.15 2.00 16 7 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 10 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 11 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 15 C 0.12 4.18 10.85 84.64 0.92 5.10 16 16 N -0.55 -19.23 9.22 -308.94 -2.85 -22.08 16 17 C 0.29 9.47 7.47 84.78 0.63 10.11 16 18 O -0.31 -8.72 8.72 -89.93 -0.78 -9.51 16 19 C 0.07 1.77 4.69 71.98 0.34 2.11 16 20 C -0.09 -1.58 3.16 -10.79 -0.03 -1.62 16 21 C -0.15 -2.48 9.09 71.98 0.65 -1.82 16 22 C -0.14 -1.90 9.19 71.98 0.66 -1.24 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 25 H 0.07 1.60 7.55 -2.39 -0.02 1.58 16 26 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 27 H 0.07 2.69 8.09 -2.39 -0.02 2.67 16 28 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 29 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.16 5.37 8.06 -2.91 -0.02 5.34 16 33 H 0.05 1.36 8.10 -2.38 -0.02 1.35 16 34 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 35 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 0.97 7.82 -2.39 -0.02 0.95 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -66.05 343.07 4.52 -61.53 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.97 Total: 11.55 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 4.87 Total: -30.56 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -2.56 Total: -79.00 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.78 Total: -9.51 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.05 4.52 -61.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.734 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds