Wall clock time and date at job start Mon Mar 30 2020 00:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38229 * 120.00033 * 2 1 4 4 C 1.38232 * 120.00145 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00419 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00141 * 359.97438 * 4 3 2 7 7 C 1.38237 * 119.99570 * 359.97438 * 6 4 3 8 8 C 1.50703 * 120.00162 * 179.97438 * 7 6 4 9 9 N 1.46901 * 109.46752 * 89.99839 * 8 7 6 10 10 C 1.46900 * 110.99951 * 66.05189 * 9 8 7 11 11 C 1.46906 * 110.99396 * 190.00084 * 9 8 7 12 12 C 1.52998 * 109.46836 * 170.00522 * 11 9 8 13 13 H 1.09004 * 109.47223 * 59.99693 * 12 11 9 14 14 O 1.42910 * 109.47077 * 299.99984 * 12 11 9 15 15 C 1.50696 * 109.47188 * 180.02562 * 12 11 9 16 16 H 1.07995 * 120.00332 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99983 * 180.02562 * 15 12 11 18 18 N 1.31517 * 120.00210 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00019 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 15 23 23 C 1.38233 * 119.99951 * 180.27098 * 2 1 3 24 24 H 1.08999 * 109.46949 * 90.00387 * 1 2 3 25 25 H 1.08994 * 109.47255 * 210.00766 * 1 2 3 26 26 H 1.09003 * 109.46944 * 330.00397 * 1 2 3 27 27 H 1.08002 * 120.00082 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47346 * 270.02490 * 5 4 3 29 29 H 1.09004 * 109.46795 * 30.02140 * 5 4 3 30 30 H 1.08993 * 109.47228 * 150.01517 * 5 4 3 31 31 H 1.07999 * 120.00325 * 179.97438 * 6 4 3 32 32 H 1.09002 * 109.46685 * 330.00189 * 8 7 6 33 33 H 1.08995 * 109.47310 * 210.00427 * 8 7 6 34 34 H 1.08997 * 109.47106 * 183.94474 * 10 9 8 35 35 H 1.09001 * 109.46989 * 303.95194 * 10 9 8 36 36 H 1.09002 * 109.47006 * 63.94651 * 10 9 8 37 37 H 1.08996 * 109.47057 * 50.00856 * 11 9 8 38 38 H 1.08997 * 109.47577 * 290.00213 * 11 9 8 39 39 H 0.96696 * 113.99416 * 300.00064 * 14 12 11 40 40 H 0.97000 * 119.99462 * 359.97438 * 18 17 15 41 41 H 1.08004 * 119.99712 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2718 0.0000 -0.0005 7 6 3.5805 -1.1972 0.0005 8 6 4.3340 -2.5023 0.0000 9 7 4.5804 -2.9260 1.3848 10 6 3.3210 -3.2499 2.0682 11 6 5.5111 -4.0617 1.4300 12 6 5.9371 -4.3146 2.8776 13 1 5.0578 -4.5410 3.4808 14 8 6.5823 -3.1490 3.3948 15 6 6.8923 -5.4792 2.9240 16 1 7.1677 -5.9884 2.0124 17 6 7.4139 -5.8953 4.1306 18 7 7.0781 -5.2756 5.2410 19 14 8.5974 -7.3394 4.1883 20 1 7.8323 -8.5996 4.3672 21 1 9.3642 -7.4021 2.9181 22 1 9.5364 -7.1648 5.3253 23 6 2.1982 -1.1971 -0.0057 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.5150 2.8169 -1.0289 29 1 3.7454 3.2619 0.5131 30 1 5.2868 2.3719 0.5121 31 1 5.3518 0.0000 -0.0014 32 1 5.2858 -2.3721 -0.5150 33 1 3.7443 -3.2620 -0.5131 34 1 3.5255 -3.4928 3.1109 35 1 2.6503 -2.3920 2.0197 36 1 2.8528 -4.1051 1.5810 37 1 6.3903 -3.8352 0.8269 38 1 5.0190 -4.9507 1.0356 39 1 7.3746 -2.8884 2.9056 40 1 6.4639 -4.5255 5.2109 41 1 1.6581 -2.1324 -0.0105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333486349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:11 Heat of formation + Delta-G solvation = -63.035274 kcal Electronic energy + Delta-G solvation = -19750.205855 eV Core-core repulsion = 16821.224813 eV Total energy + Delta-G solvation = -2928.981043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73169 -39.05751 -37.02575 -34.38329 -34.23632 -33.43405 -30.22151 -28.71342 -28.05087 -27.45480 -26.69761 -24.42657 -22.14354 -21.59752 -21.22665 -19.39237 -17.29901 -17.08369 -16.89665 -16.67271 -15.95653 -15.78560 -15.48279 -15.23073 -14.76380 -14.65273 -14.15255 -14.01516 -13.97571 -13.81886 -13.62092 -13.33890 -13.08136 -12.82308 -12.65291 -12.52326 -12.50957 -12.28863 -12.05192 -11.92387 -11.84953 -11.78094 -11.17151 -10.62461 -10.08713 -9.60029 -9.42456 -9.18889 -8.61845 -6.46825 0.41523 0.47126 1.52932 1.61606 1.79512 2.54540 2.68474 3.16148 3.22168 3.74806 3.84427 3.94932 4.04984 4.14037 4.20428 4.28902 4.30862 4.41603 4.49012 4.51602 4.63224 4.66796 4.69809 4.72665 4.81182 4.85109 4.86315 4.92123 5.00768 5.07172 5.26447 5.36699 5.43902 5.63245 5.65547 5.74616 5.80772 6.01722 6.11638 6.15991 6.19965 6.55888 7.24873 7.51731 8.75712 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033526 B = 0.003937 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.964586 B = 7110.826457 C = 7445.857282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.131 4.131 4 C -0.092 4.092 5 C -0.111 4.111 6 C -0.124 4.124 7 C -0.075 4.075 8 C 0.094 3.906 9 N -0.536 5.536 10 C 0.031 3.969 11 C 0.055 3.945 12 C 0.220 3.780 13 H 0.018 0.982 14 O -0.582 6.582 15 C -0.662 4.662 16 H 0.051 0.949 17 C -0.017 4.017 18 N -0.921 5.921 19 Si 1.119 2.881 20 H -0.274 1.274 21 H -0.268 1.268 22 H -0.284 1.284 23 C -0.134 4.134 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.360 0.640 40 H 0.267 0.733 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 12.194 -13.917 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.092 4.092 5 C -0.168 4.168 6 C -0.142 4.142 7 C -0.075 4.075 8 C -0.033 4.033 9 N -0.259 5.259 10 C -0.117 4.117 11 C -0.073 4.073 12 C 0.163 3.837 13 H 0.036 0.964 14 O -0.387 6.387 15 C -0.700 4.700 16 H 0.070 0.930 17 C -0.219 4.219 18 N -0.557 5.557 19 Si 0.941 3.059 20 H -0.200 1.200 21 H -0.193 1.193 22 H -0.210 1.210 23 C -0.152 4.152 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.159 0.841 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.205 0.795 40 H 0.077 0.923 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.855 11.640 -12.235 19.552 hybrid contribution -0.795 -0.009 -1.555 1.746 sum -10.649 11.631 -13.790 20.949 Atomic orbital electron populations 1.20811 0.89320 1.03432 1.03115 1.20194 0.97436 0.92694 0.98801 1.21171 0.93443 0.98277 1.02000 1.20218 0.94442 0.95781 0.98743 1.20812 0.99801 0.93047 1.03094 1.21020 0.99915 0.91868 1.01413 1.19747 0.93885 0.94497 0.99420 1.21082 0.99612 0.93526 0.89107 1.61945 1.12473 1.36434 1.15098 1.22338 0.91143 0.99794 0.98421 1.22585 0.95395 0.90451 0.98853 1.19361 0.91569 0.83368 0.89417 0.96429 1.86426 1.44164 1.48067 1.60009 1.22872 1.32301 1.18613 0.96178 0.93048 1.27326 0.99610 1.03181 0.91788 1.70748 1.32990 1.21980 1.29969 0.82931 0.74323 0.72378 0.76310 1.19954 1.19292 1.21019 1.21044 0.93309 0.98313 1.02581 0.90078 0.91444 0.90386 0.84094 0.89989 0.90347 0.91754 0.86439 0.89971 0.93901 0.93756 0.90348 0.95470 0.91078 0.95575 0.79486 0.92270 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 71.24 0.71 -0.99 16 2 C -0.09 -2.00 5.88 -19.87 -0.12 -2.12 16 3 C -0.13 -2.77 9.36 22.27 0.21 -2.56 16 4 C -0.09 -2.13 5.88 -19.87 -0.12 -2.25 16 5 C -0.11 -1.91 10.01 71.24 0.71 -1.20 16 6 C -0.12 -3.38 9.36 22.27 0.21 -3.17 16 7 C -0.08 -2.13 4.88 -19.86 -0.10 -2.23 16 8 C 0.09 2.86 5.12 85.56 0.44 3.29 16 9 N -0.54 -20.06 4.62 -927.05 -4.28 -24.35 16 10 C 0.03 1.13 8.99 127.69 1.15 2.27 16 11 C 0.06 2.33 4.56 86.30 0.39 2.72 16 12 C 0.22 11.53 2.30 29.85 0.07 11.60 16 13 H 0.02 1.04 6.42 -2.38 -0.02 1.02 16 14 O -0.58 -31.01 11.88 -148.98 -1.77 -32.78 16 15 C -0.66 -37.35 8.76 25.60 0.22 -37.13 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 17 C -0.02 -0.99 5.40 84.65 0.46 -0.54 16 18 N -0.92 -58.00 13.53 21.45 0.29 -57.71 16 19 Si 1.12 50.18 29.90 68.60 2.05 52.24 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 C -0.13 -3.40 7.58 22.27 0.17 -3.23 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 26 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 27 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.12 8.09 -2.38 -0.02 1.10 16 30 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 31 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.08 2.40 7.88 -2.39 -0.02 2.38 16 33 H 0.04 1.23 8.06 -2.39 -0.02 1.21 16 34 H 0.04 1.84 6.47 -2.39 -0.02 1.82 16 35 H 0.08 2.55 5.91 -2.39 -0.01 2.54 16 36 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 2.89 7.93 -2.39 -0.02 2.87 16 38 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 39 H 0.36 17.28 9.04 -74.06 -0.67 16.61 16 40 H 0.27 17.45 6.47 -92.71 -0.60 16.85 16 41 H 0.12 2.85 8.01 -2.91 -0.02 2.83 16 Total: -1.00 -67.91 334.27 1.20 -66.70 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.50 Total: 31.42 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 4.41 Total: -35.52 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -3.99 Total: -82.06 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.77 Total: -32.78 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.24 kcal Total: -67.91 1.20 -66.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333486349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.669 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds