Wall clock time and date at job start Mon Mar 30 2020 00:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.46952 * 120.00425 * 2 1 4 4 O 1.21662 * 120.00295 * 204.68762 * 3 2 1 5 5 N 1.34775 * 119.99812 * 24.68280 * 3 2 1 6 6 C 1.36812 * 120.00041 * 202.56457 * 5 3 2 7 7 H 1.08005 * 120.00086 * 21.82386 * 6 5 3 8 8 C 1.39077 * 120.00202 * 201.81030 * 6 5 3 9 9 N 1.31354 * 119.99896 * 33.71486 * 8 6 5 10 10 Si 1.86801 * 120.00406 * 213.70975 * 8 6 5 11 11 H 1.48501 * 109.46935 * 0.02562 * 10 8 6 12 12 H 1.48489 * 109.47193 * 120.00217 * 10 8 6 13 13 H 1.48504 * 109.47166 * 240.00407 * 10 8 6 14 14 C 1.46499 * 119.99967 * 22.57564 * 5 3 2 15 15 C 1.54971 * 110.92270 * 263.59489 * 14 5 3 16 16 C 1.54267 * 104.16277 * 156.29723 * 15 14 5 17 17 C 1.53873 * 106.63589 * 336.44069 * 16 15 14 18 18 C 1.54268 * 106.60207 * 359.97438 * 17 16 15 19 19 C 1.33121 * 119.99854 * 179.97438 * 2 1 3 20 20 C 1.51409 * 136.32026 * 179.63139 * 19 2 1 21 21 C 1.53371 * 87.51668 * 206.05552 * 20 19 2 22 22 C 1.51406 * 136.31591 * 359.97438 * 19 2 1 23 23 H 1.09004 * 109.46850 * 82.86688 * 1 2 3 24 24 H 1.08994 * 109.47636 * 202.87587 * 1 2 3 25 25 H 1.09008 * 109.47012 * 322.87535 * 1 2 3 26 26 H 0.96997 * 119.99990 * 179.97438 * 9 8 6 27 27 H 1.08997 * 110.67707 * 140.28871 * 14 5 3 28 28 H 1.08995 * 110.47585 * 37.63889 * 15 14 5 29 29 H 1.09004 * 110.52531 * 274.97956 * 15 14 5 30 30 H 1.09001 * 110.02716 * 217.13999 * 16 15 14 31 31 H 1.08997 * 110.03169 * 95.75470 * 16 15 14 32 32 H 1.09004 * 110.02971 * 119.26386 * 17 16 15 33 33 H 1.08994 * 110.03689 * 240.64338 * 17 16 15 34 34 H 1.09000 * 110.48481 * 142.28159 * 18 17 16 35 35 H 1.09000 * 110.48406 * 264.79397 * 18 17 16 36 36 H 1.08997 * 113.55561 * 320.63702 * 20 19 2 37 37 H 1.08992 * 113.55910 * 91.36728 * 20 19 2 38 38 H 1.09005 * 113.96705 * 220.28903 * 21 20 19 39 39 H 1.08998 * 113.60286 * 88.79616 * 21 20 19 40 40 H 1.08998 * 113.56246 * 268.63294 * 22 19 2 41 41 H 1.09003 * 113.56280 * 39.36187 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2418 1.2726 0.0000 4 8 3.3751 1.3207 -0.4401 5 7 1.6604 2.3865 0.4874 6 6 2.1051 3.6188 0.0933 7 1 2.6498 3.7254 -0.8333 8 6 1.8556 4.7343 0.8855 9 7 1.8271 4.6178 2.1936 10 14 1.5610 6.3984 0.0895 11 1 1.6449 6.2626 -1.3869 12 1 0.2128 6.8948 0.4646 13 1 2.5908 7.3604 0.5579 14 6 0.5522 2.2777 1.4395 15 6 -0.8131 2.3863 0.7144 16 6 -1.8003 1.6707 1.6594 17 6 -0.9668 0.7006 2.5148 18 6 0.4987 0.8593 2.0597 19 6 2.1726 -1.1529 0.0005 20 6 3.6256 -1.5784 -0.0060 21 6 3.1712 -2.8832 -0.6718 22 6 1.8143 -2.6240 0.0016 23 1 -0.3633 0.1276 -1.0198 24 1 -0.3634 -0.9468 0.3995 25 1 -0.3633 0.8194 0.6203 26 1 1.6534 5.3958 2.7461 27 1 0.6372 3.0365 2.2173 28 1 -0.7737 1.8804 -0.2503 29 1 -1.0961 3.4312 0.5870 30 1 -2.5381 1.1170 1.0788 31 1 -2.2989 2.3988 2.2993 32 1 -1.0602 0.9583 3.5698 33 1 -1.3006 -0.3238 2.3501 34 1 1.1728 0.7908 2.9134 35 1 0.7505 0.1049 1.3143 36 1 4.2572 -0.9618 -0.6455 37 1 4.0425 -1.7200 0.9910 38 1 3.6839 -3.7711 -0.3015 39 1 3.1403 -2.8302 -1.7600 40 1 1.7348 -3.0523 1.0008 41 1 0.9604 -2.8650 -0.6315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348087531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:35 Heat of formation + Delta-G solvation = 123.779521 kcal Electronic energy + Delta-G solvation = -21574.190050 eV Core-core repulsion = 18653.309905 eV Total energy + Delta-G solvation = -2920.880145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.26759 -38.13235 -36.95219 -34.28626 -32.58485 -31.35175 -28.04172 -27.09809 -26.09921 -25.09719 -24.90801 -22.16024 -20.67188 -19.80561 -19.10692 -17.15377 -16.84893 -16.04228 -15.47052 -15.14671 -14.91408 -14.48007 -14.22065 -13.92293 -13.25322 -12.86286 -12.66979 -12.25206 -12.07859 -11.65894 -11.52653 -11.33543 -11.15505 -11.09732 -10.97717 -10.73480 -10.59144 -10.55930 -10.45147 -10.29275 -10.05215 -9.96247 -9.61467 -9.09978 -8.89446 -8.30165 -7.88481 -7.55017 -6.37938 -3.78053 2.15338 3.14498 3.25773 3.32988 4.09111 4.18171 4.65745 4.89046 4.95956 5.03532 5.11979 5.16909 5.27162 5.38547 5.43128 5.63633 5.79014 5.85215 5.91650 5.96183 5.97204 6.03145 6.09465 6.10442 6.18613 6.27928 6.31489 6.39795 6.43820 6.53225 6.61868 6.65127 6.77503 6.82515 6.89988 7.00837 7.33193 7.43881 7.59457 8.15796 8.54229 9.20197 9.44057 10.02812 10.61110 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.008002 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.344771 B = 3498.352695 C = 4373.125554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.102 4.102 3 C 0.486 3.514 4 O -0.577 6.577 5 N -0.431 5.431 6 C -0.304 4.304 7 H 0.098 0.902 8 C 0.036 3.964 9 N -0.849 5.849 10 Si 0.907 3.093 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.282 1.282 14 C 0.125 3.875 15 C -0.155 4.155 16 C -0.126 4.126 17 C -0.120 4.120 18 C -0.214 4.214 19 C -0.146 4.146 20 C -0.096 4.096 21 C -0.138 4.138 22 C -0.098 4.098 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.159 0.841 26 H 0.268 0.732 27 H 0.135 0.865 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.147 0.853 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 -9.451 0.080 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.106 4.106 3 C 0.276 3.724 4 O -0.462 6.462 5 N -0.148 5.148 6 C -0.432 4.432 7 H 0.116 0.884 8 C -0.170 4.170 9 N -0.486 5.486 10 Si 0.733 3.267 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.208 1.208 14 C 0.020 3.980 15 C -0.193 4.193 16 C -0.164 4.164 17 C -0.158 4.158 18 C -0.249 4.249 19 C -0.149 4.149 20 C -0.133 4.133 21 C -0.176 4.176 22 C -0.135 4.135 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.175 0.825 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.507 -9.267 0.036 11.323 hybrid contribution -0.248 0.869 -0.092 0.908 sum -6.755 -8.398 -0.056 10.778 Atomic orbital electron populations 1.23345 0.91304 1.06358 1.02907 1.20441 0.95298 0.93082 1.01763 1.17934 0.86000 0.83099 0.85336 1.90599 1.17492 1.85114 1.52961 1.43375 1.27870 1.04584 1.38990 1.19569 1.36838 0.81742 1.05018 0.88418 1.25195 0.97681 0.99690 0.94387 1.69965 1.43517 1.31426 1.03686 0.86177 0.78172 0.82013 0.80309 1.19043 1.20440 1.20829 1.22527 0.84508 0.97483 0.93522 1.23154 0.96191 1.00533 0.99466 1.22180 0.97858 0.98282 0.98108 1.22130 0.95328 0.98861 0.99482 1.24944 0.95931 1.00928 1.03078 1.22774 0.97432 0.92914 1.01750 1.21969 0.94953 0.95533 1.00858 1.22637 0.97018 0.97854 1.00059 1.22109 0.97726 0.93020 1.00621 0.93521 0.92632 0.82458 0.92140 0.84822 0.89956 0.91713 0.92055 0.91864 0.92123 0.92089 0.92757 0.83742 0.89829 0.89951 0.91382 0.90236 0.89481 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 5.88 36.00 0.21 -2.96 16 2 C -0.10 -2.11 3.67 -102.88 -0.38 -2.49 16 3 C 0.49 12.51 6.86 -12.73 -0.09 12.42 16 4 O -0.58 -16.77 15.44 5.22 0.08 -16.69 16 5 N -0.43 -11.16 2.66 -106.95 -0.28 -11.45 16 6 C -0.30 -8.49 9.03 -15.02 -0.14 -8.63 16 7 H 0.10 2.86 7.86 -52.48 -0.41 2.45 16 8 C 0.04 0.94 4.87 -17.44 -0.08 0.86 16 9 N -0.85 -22.66 11.19 55.50 0.62 -22.04 16 10 Si 0.91 20.22 29.66 -169.99 -5.04 15.18 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.12 2.76 2.74 -65.89 -0.18 2.58 16 15 C -0.16 -2.89 5.79 -25.03 -0.14 -3.03 16 16 C -0.13 -1.87 6.27 -25.61 -0.16 -2.03 16 17 C -0.12 -1.80 6.00 -25.61 -0.15 -1.96 16 18 C -0.21 -4.06 5.05 -25.07 -0.13 -4.19 16 19 C -0.15 -2.70 6.53 -100.44 -0.66 -3.36 16 20 C -0.10 -1.68 7.32 -27.56 -0.20 -1.88 16 21 C -0.14 -1.87 8.17 -26.19 -0.21 -2.09 16 22 C -0.10 -1.36 7.59 -27.40 -0.21 -1.56 16 23 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 24 H 0.05 0.81 7.30 -51.93 -0.38 0.43 16 25 H 0.16 2.73 0.01 -120.43 0.00 2.73 16 26 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 27 H 0.13 3.32 5.27 -51.93 -0.27 3.04 16 28 H 0.08 1.51 5.41 -51.93 -0.28 1.23 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.79 7.69 -51.93 -0.40 0.39 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.15 2.73 1.45 -182.10 -0.26 2.47 16 36 H 0.08 1.66 7.35 -51.93 -0.38 1.28 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -30.64 305.91 -8.70 -39.33 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.16 Total: 9.37 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.52 Total: -18.31 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.34 Total: -33.49 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.08 Total: -16.69 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.04 Total: 15.18 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.64 -8.70 -39.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348087531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.111 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds