Wall clock time and date at job start Mon Mar 30 2020 00:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46835 * 2 1 4 4 C 1.50700 * 109.47488 * 120.00461 * 2 1 3 5 5 C 1.38292 * 119.93807 * 300.00035 * 4 2 1 6 6 C 1.38118 * 120.05137 * 179.97438 * 5 4 2 7 7 C 1.38757 * 119.94781 * 359.97438 * 6 5 4 8 8 O 1.35897 * 120.05596 * 179.97438 * 7 6 5 9 9 C 1.38714 * 119.88399 * 0.02562 * 7 6 5 10 10 C 1.50703 * 120.02678 * 179.97438 * 9 7 6 11 11 N 1.46906 * 109.47109 * 284.99988 * 10 9 7 12 12 C 1.46895 * 110.99789 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.50692 * 109.47453 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00058 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00172 * 180.02562 * 14 13 12 17 17 N 1.31506 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99709 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47101 * 60.00163 * 18 16 14 20 20 H 1.48504 * 109.46703 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47283 * 299.99821 * 18 16 14 22 22 C 1.38162 * 119.94476 * 0.24915 * 9 7 6 23 23 H 1.09005 * 109.46621 * 299.99768 * 1 2 3 24 24 H 1.09001 * 109.47180 * 59.99718 * 1 2 3 25 25 H 1.09006 * 109.46924 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46621 * 240.00232 * 2 1 3 27 27 H 1.09002 * 109.47079 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47467 * 300.00106 * 3 2 1 29 29 H 1.09005 * 109.47327 * 60.00664 * 3 2 1 30 30 H 1.07998 * 119.97777 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.02960 * 179.97438 * 6 5 4 32 32 H 0.96702 * 114.00304 * 270.01484 * 8 7 6 33 33 H 1.08992 * 109.46894 * 164.99723 * 10 9 7 34 34 H 1.09004 * 109.47113 * 44.99874 * 10 9 7 35 35 H 1.00902 * 111.00068 * 56.04268 * 11 10 9 36 36 H 1.08996 * 109.47424 * 299.99656 * 12 11 10 37 37 H 1.09002 * 109.47411 * 60.00282 * 12 11 10 38 38 H 1.09007 * 109.47219 * 300.00436 * 13 12 11 39 39 H 1.09005 * 109.47157 * 59.99991 * 13 12 11 40 40 H 0.96998 * 119.99843 * 180.02562 * 17 16 14 41 41 H 1.08004 * 119.97309 * 179.74498 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7105 1.2304 5 6 1.6976 -0.2370 2.4858 6 6 2.1564 -0.8867 3.6151 7 6 2.9534 -2.0155 3.4891 8 8 3.4064 -2.6562 4.5987 9 6 3.2877 -2.4883 2.2286 10 6 4.1536 -3.7138 2.0881 11 7 5.5468 -3.3673 2.3996 12 6 6.4218 -4.5404 2.2733 13 6 7.8613 -4.1410 2.6040 14 6 8.7591 -5.3442 2.4739 15 1 8.3446 -6.2984 2.1839 16 6 10.1097 -5.2270 2.7252 17 7 10.6144 -4.0653 3.0788 18 14 11.2224 -6.7189 2.5645 19 1 11.1597 -7.2357 1.1738 20 1 12.6196 -6.3311 2.8854 21 1 10.7728 -7.7755 3.5060 22 6 2.8310 -1.8316 1.1021 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.0770 0.6414 2.5835 31 1 1.8950 -0.5164 4.5954 32 1 4.2590 -2.3319 4.9195 33 1 4.0918 -4.0869 1.0659 34 1 3.8079 -4.4840 2.7776 35 1 5.6209 -2.9586 3.3191 36 1 6.0917 -5.3160 2.9643 37 1 6.3759 -4.9198 1.2524 38 1 8.1912 -3.3654 1.9127 39 1 7.9076 -3.7613 3.6248 40 1 11.5646 -3.9828 3.2552 41 1 3.0945 -2.1969 0.1205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664281053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:40 Heat of formation + Delta-G solvation = -46.709233 kcal Electronic energy + Delta-G solvation = -19174.221204 eV Core-core repulsion = 16245.948112 eV Total energy + Delta-G solvation = -2928.273092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13960 -37.51957 -35.97552 -34.61042 -33.07029 -31.49773 -29.50726 -28.47728 -27.33853 -25.40471 -23.50911 -22.83475 -22.12315 -20.60447 -19.61621 -18.16636 -16.36879 -16.27299 -16.01991 -15.31123 -14.81972 -14.50905 -14.28767 -14.17109 -13.74445 -13.60161 -13.38234 -12.95951 -12.51483 -12.41245 -12.27339 -12.07686 -11.85376 -11.84448 -11.25339 -11.08633 -10.97807 -10.95752 -10.87300 -10.55715 -10.30442 -9.99928 -9.42271 -9.19586 -8.83537 -8.41212 -8.34677 -7.82005 -5.99833 -4.02498 1.21343 1.34952 3.33784 3.37972 3.40452 3.54719 4.28184 4.43979 4.50404 4.61458 4.82001 4.95584 5.00480 5.06680 5.20852 5.28281 5.36111 5.40820 5.45254 5.54220 5.61439 5.72856 5.78242 5.82808 5.94050 5.99110 6.04869 6.08985 6.29156 6.34456 6.39860 6.52230 6.62364 6.81679 6.96499 7.43773 7.65670 7.72038 7.80607 7.92921 8.07291 8.43061 9.04424 9.61254 11.11595 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.003319 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.802365 B = 8435.513630 C = 8779.284032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.105 4.105 6 C -0.144 4.144 7 C 0.105 3.895 8 O -0.499 6.499 9 C -0.091 4.091 10 C 0.097 3.903 11 N -0.682 5.682 12 C 0.065 3.935 13 C 0.026 3.974 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.087 4.087 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.391 0.609 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.330 0.670 36 H 0.017 0.983 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.118 9.634 -2.996 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.087 4.087 5 C -0.123 4.123 6 C -0.162 4.162 7 C 0.060 3.940 8 O -0.310 6.310 9 C -0.092 4.092 10 C -0.032 4.032 11 N -0.313 5.313 12 C -0.063 4.063 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.106 4.106 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.247 0.753 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.147 0.853 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.321 9.610 -3.639 22.771 hybrid contribution 0.934 -1.046 0.897 1.665 sum -19.387 8.563 -2.743 21.371 Atomic orbital electron populations 1.21862 0.94489 1.01971 1.01744 1.20106 0.95740 0.96094 0.95479 1.21860 1.01597 0.95022 1.01682 1.19829 0.98284 0.95979 0.94655 1.20753 1.00336 0.99769 0.91489 1.21332 1.00355 0.95300 0.99221 1.18344 0.97653 0.92302 0.85716 1.84779 1.41682 1.61794 1.42712 1.20231 0.98371 0.98230 0.92401 1.20797 0.88329 0.92642 1.01390 1.60733 1.04621 1.31791 1.34170 1.22199 0.95094 0.89292 0.99745 1.19058 0.88109 0.97021 0.96915 1.21139 0.92701 0.95640 1.46664 0.92784 1.25000 0.98204 0.95886 0.95244 1.69958 1.13032 1.23494 1.46797 0.86640 0.79615 0.83035 0.78594 1.20209 1.21262 1.20275 1.20863 0.96871 0.94728 0.98096 0.92551 0.92485 0.92547 0.90379 0.92248 0.92508 0.92565 0.86079 0.85714 0.75288 0.90604 0.94193 0.85254 0.96455 0.92223 0.95662 0.96861 0.92922 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.01 37.16 0.33 -0.74 16 2 C -0.06 -0.49 3.09 -91.77 -0.28 -0.77 16 3 C -0.14 -1.17 9.01 37.16 0.33 -0.83 16 4 C -0.09 -0.96 4.78 -104.60 -0.50 -1.46 16 5 C -0.11 -1.12 8.70 -39.61 -0.34 -1.47 16 6 C -0.14 -1.68 9.99 -39.43 -0.39 -2.08 16 7 C 0.10 1.41 6.56 -39.21 -0.26 1.16 16 8 O -0.50 -6.61 12.46 -19.42 -0.24 -6.85 16 9 C -0.09 -1.29 5.44 -104.47 -0.57 -1.86 16 10 C 0.10 1.52 5.44 -4.97 -0.03 1.49 16 11 N -0.68 -12.38 6.49 -115.06 -0.75 -13.12 16 12 C 0.06 1.38 5.62 -3.82 -0.02 1.36 16 13 C 0.03 0.69 5.23 -27.88 -0.15 0.55 16 14 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.09 -1.10 9.29 -39.61 -0.37 -1.47 16 23 H 0.06 0.40 7.38 -51.93 -0.38 0.02 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.43 7.38 -51.93 -0.38 0.04 16 30 H 0.12 1.03 7.09 -52.49 -0.37 0.66 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.39 3.95 8.41 45.56 0.38 4.33 16 33 H 0.08 1.14 7.95 -51.93 -0.41 0.72 16 34 H 0.04 0.64 8.01 -51.93 -0.42 0.23 16 35 H 0.33 5.69 7.55 -39.29 -0.30 5.39 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 1.46 7.89 -52.48 -0.41 1.05 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -31.50 338.60 -8.87 -40.37 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.05 Total: 3.85 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.65 Total: -19.81 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: -0.01 Total: -39.42 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.24 Total: -6.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.50 -8.87 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664281053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.335 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds