Wall clock time and date at job start Sun Mar 29 2020 23:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47241 * 119.99933 * 2 1 3 5 5 N 1.46901 * 109.46820 * 64.99853 * 4 2 1 6 6 C 1.46903 * 110.99623 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47148 * 34.99954 * 6 5 4 8 8 C 1.53002 * 109.47101 * 274.99787 * 6 5 4 9 9 C 1.50704 * 109.47151 * 155.00233 * 6 5 4 10 10 C 1.38299 * 119.93072 * 39.72221 * 9 6 5 11 11 C 1.38099 * 120.06809 * 179.72372 * 10 9 6 12 12 C 1.38876 * 119.92991 * 0.55702 * 11 10 9 13 13 O 1.35750 * 120.06959 * 179.74905 * 12 11 10 14 14 C 1.34827 * 117.00104 * 174.43819 * 13 12 11 15 15 H 1.07994 * 120.00121 * 5.05448 * 14 13 12 16 16 C 1.38654 * 119.99939 * 185.05211 * 14 13 12 17 17 N 1.31560 * 120.00052 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99963 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47656 * 90.00041 * 18 16 14 20 20 H 1.48507 * 109.47218 * 210.00281 * 18 16 14 21 21 H 1.48508 * 109.47250 * 329.99484 * 18 16 14 22 22 C 1.38875 * 119.86408 * 359.71864 * 12 11 10 23 23 C 1.38105 * 119.92901 * 0.02562 * 22 12 11 24 24 H 1.08995 * 109.47144 * 300.00006 * 1 2 3 25 25 H 1.09001 * 109.47035 * 60.00344 * 1 2 3 26 26 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47237 * 239.99862 * 2 1 3 28 28 H 1.09003 * 109.47160 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46897 * 299.99741 * 3 2 1 30 30 H 1.08994 * 109.47607 * 59.99768 * 3 2 1 31 31 H 1.09002 * 109.46710 * 305.00371 * 4 2 1 32 32 H 1.08995 * 109.47220 * 184.99939 * 4 2 1 33 33 H 1.00896 * 111.00470 * 56.05131 * 5 4 2 34 34 H 1.09000 * 109.46874 * 60.00073 * 8 6 5 35 35 H 1.08998 * 109.46932 * 179.97438 * 8 6 5 36 36 H 1.08997 * 109.47255 * 300.00101 * 8 6 5 37 37 H 1.08005 * 119.96654 * 0.02562 * 10 9 6 38 38 H 1.08000 * 120.03259 * 180.26925 * 11 10 9 39 39 H 0.97005 * 119.99499 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.04137 * 179.97438 * 22 12 11 41 41 H 1.07994 * 119.96237 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6514 -2.1367 1.1904 6 6 2.1248 -2.8623 2.3768 7 1 2.0808 -2.2058 3.2457 8 6 3.5685 -3.3173 2.1539 9 6 1.2493 -4.0662 2.6118 10 6 0.8055 -4.8169 1.5384 11 6 0.0078 -5.9240 1.7509 12 6 -0.3582 -6.2765 3.0433 13 8 -1.1464 -7.3613 3.2551 14 6 -1.3693 -7.7151 4.5368 15 1 -0.9964 -7.0973 5.3403 16 6 -2.0773 -8.8723 4.8235 17 7 -2.5320 -9.6247 3.8448 18 14 -2.3867 -9.3622 6.5993 19 1 -3.6636 -8.7626 7.0630 20 1 -2.4701 -10.8416 6.6974 21 1 -1.2721 -8.8719 7.4495 22 6 0.0844 -5.5174 4.1187 23 6 0.8862 -4.4144 3.9000 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 1.9881 -2.5693 0.3434 34 1 4.2017 -2.4466 1.9839 35 1 3.9198 -3.8553 3.0343 36 1 3.6125 -3.9738 1.2849 37 1 1.0871 -4.5398 0.5332 38 1 -0.3348 -6.5123 0.9125 39 1 -3.0277 -10.4340 4.0454 40 1 -0.1989 -5.7887 5.1250 41 1 1.2310 -3.8240 4.7360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037186708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:55 Heat of formation + Delta-G solvation = -21.594876 kcal Electronic energy + Delta-G solvation = -19344.421815 eV Core-core repulsion = 16417.237763 eV Total energy + Delta-G solvation = -2927.184052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.17376 -37.89473 -36.41138 -34.39693 -32.20529 -30.29682 -29.91372 -27.85457 -27.17193 -25.38044 -24.92641 -22.49831 -21.73890 -20.46748 -19.76337 -17.87086 -16.91272 -15.79791 -15.35046 -15.11278 -14.49095 -14.47604 -13.97130 -13.73793 -13.60464 -13.40393 -13.05505 -12.75592 -12.66969 -12.40128 -12.32167 -12.20505 -11.81382 -11.63462 -11.40867 -11.15432 -11.04107 -11.02576 -10.78989 -10.62945 -10.53917 -10.36547 -10.28908 -9.26854 -8.77853 -8.27820 -8.08058 -7.07985 -6.40254 -3.98915 2.30535 2.40735 3.15391 3.16068 3.20865 4.00560 4.20133 4.63927 4.72446 4.84551 5.07680 5.10323 5.18038 5.33075 5.37132 5.38291 5.45164 5.53924 5.56412 5.68476 5.72065 5.79400 5.82821 5.83593 5.95297 6.00551 6.02865 6.18399 6.23043 6.29917 6.38980 6.50175 6.78682 6.93397 7.09499 7.14118 7.37195 7.47434 7.49912 7.52819 7.90997 8.05256 9.05718 9.77549 10.78120 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037165 B = 0.003490 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.224817 B = 8021.326800 C = 8186.394090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.063 3.937 5 N -0.678 5.678 6 C 0.141 3.859 7 H 0.074 0.926 8 C -0.175 4.175 9 C -0.165 4.165 10 C -0.053 4.053 11 C -0.195 4.195 12 C 0.153 3.847 13 O -0.181 6.181 14 C -0.390 4.390 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.233 4.233 23 C -0.069 4.069 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.337 0.663 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.269 0.731 40 H 0.125 0.875 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.639 16.277 -4.500 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.066 4.066 5 N -0.308 5.308 6 C 0.031 3.969 7 H 0.092 0.908 8 C -0.234 4.234 9 C -0.167 4.167 10 C -0.072 4.072 11 C -0.214 4.214 12 C 0.100 3.900 13 O -0.084 6.084 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.253 4.253 23 C -0.088 4.088 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.156 0.844 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.754 16.017 -4.413 18.779 hybrid contribution 0.805 -0.303 0.797 1.172 sum 9.559 15.714 -3.617 18.746 Atomic orbital electron populations 1.21733 0.94362 1.02964 1.00612 1.21109 0.96994 0.95421 0.97802 1.21819 1.00589 0.96226 1.01802 1.22047 0.96992 0.89188 0.98377 1.60590 1.64000 1.01578 1.04625 1.20181 0.90898 0.92927 0.92850 0.90805 1.22489 0.97406 1.00827 1.02703 1.19082 1.05497 0.98828 0.93259 1.20303 0.96187 0.93282 0.97378 1.20210 1.05529 1.00858 0.94797 1.19383 0.89361 0.87995 0.93294 1.83978 1.56729 1.38364 1.29377 1.21309 1.36418 1.08176 0.80787 0.89165 1.25272 0.96391 0.95023 0.99881 1.70045 1.34362 1.14008 1.31598 0.85730 0.79076 0.78147 0.80571 1.19922 1.20302 1.19248 1.21103 1.05665 0.99027 0.99456 1.20539 0.96755 0.96065 0.95402 0.93147 0.93708 0.91096 0.91569 0.93037 0.92664 0.92675 0.91217 0.95732 0.84438 0.93491 0.91922 0.92394 0.87381 0.86759 0.92111 0.85732 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.08 37.16 0.34 -1.06 16 2 C -0.09 -0.85 3.06 -90.62 -0.28 -1.13 16 3 C -0.15 -1.12 9.19 37.15 0.34 -0.78 16 4 C 0.06 0.64 4.87 -3.82 -0.02 0.62 16 5 N -0.68 -8.10 5.15 -107.95 -0.56 -8.66 16 6 C 0.14 1.87 2.79 -68.86 -0.19 1.67 16 7 H 0.07 0.97 7.66 -51.93 -0.40 0.57 16 8 C -0.18 -2.04 9.14 37.16 0.34 -1.70 16 9 C -0.17 -2.82 4.96 -104.58 -0.52 -3.34 16 10 C -0.05 -0.95 9.32 -39.61 -0.37 -1.32 16 11 C -0.19 -4.20 9.99 -39.40 -0.39 -4.59 16 12 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 13 O -0.18 -5.26 9.76 0.05 0.00 -5.26 16 14 C -0.39 -11.10 9.49 30.89 0.29 -10.80 16 15 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 18 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 22 C -0.23 -5.17 9.17 -39.39 -0.36 -5.53 16 23 C -0.07 -1.28 9.66 -39.61 -0.38 -1.67 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.84 7.75 -51.93 -0.40 0.43 16 27 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 32 H 0.02 0.23 7.44 -51.93 -0.39 -0.15 16 33 H 0.34 3.75 7.81 -39.29 -0.31 3.45 16 34 H 0.05 0.47 7.45 -51.93 -0.39 0.09 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 37 H 0.11 1.66 7.23 -52.48 -0.38 1.28 16 38 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.12 2.77 5.64 -52.49 -0.30 2.47 16 41 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -30.19 336.08 -7.92 -38.11 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.61 Total: 5.10 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -1.56 Total: -25.15 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.20 Total: -33.63 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.19 -7.92 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037186708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.512 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds