Wall clock time and date at job start Sun Mar 29 2020 23:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47241 * 119.99933 * 2 1 3 5 5 N 1.46901 * 109.46820 * 64.99853 * 4 2 1 6 6 C 1.46903 * 110.99623 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47148 * 34.99954 * 6 5 4 8 8 C 1.53002 * 109.47101 * 274.99787 * 6 5 4 9 9 C 1.50704 * 109.47151 * 155.00233 * 6 5 4 10 10 C 1.38299 * 119.93072 * 39.72221 * 9 6 5 11 11 C 1.38099 * 120.06809 * 179.72372 * 10 9 6 12 12 C 1.38876 * 119.92991 * 0.55702 * 11 10 9 13 13 O 1.35750 * 120.06959 * 179.74905 * 12 11 10 14 14 C 1.34827 * 117.00104 * 174.43819 * 13 12 11 15 15 H 1.07994 * 120.00121 * 5.05448 * 14 13 12 16 16 C 1.38654 * 119.99939 * 185.05211 * 14 13 12 17 17 N 1.31560 * 120.00052 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99963 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47656 * 90.00041 * 18 16 14 20 20 H 1.48507 * 109.47218 * 210.00281 * 18 16 14 21 21 H 1.48508 * 109.47250 * 329.99484 * 18 16 14 22 22 C 1.38875 * 119.86408 * 359.71864 * 12 11 10 23 23 C 1.38105 * 119.92901 * 0.02562 * 22 12 11 24 24 H 1.08995 * 109.47144 * 300.00006 * 1 2 3 25 25 H 1.09001 * 109.47035 * 60.00344 * 1 2 3 26 26 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47237 * 239.99862 * 2 1 3 28 28 H 1.09003 * 109.47160 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46897 * 299.99741 * 3 2 1 30 30 H 1.08994 * 109.47607 * 59.99768 * 3 2 1 31 31 H 1.09002 * 109.46710 * 305.00371 * 4 2 1 32 32 H 1.08995 * 109.47220 * 184.99939 * 4 2 1 33 33 H 1.00896 * 111.00470 * 56.05131 * 5 4 2 34 34 H 1.09000 * 109.46874 * 60.00073 * 8 6 5 35 35 H 1.08998 * 109.46932 * 179.97438 * 8 6 5 36 36 H 1.08997 * 109.47255 * 300.00101 * 8 6 5 37 37 H 1.08005 * 119.96654 * 0.02562 * 10 9 6 38 38 H 1.08000 * 120.03259 * 180.26925 * 11 10 9 39 39 H 0.97005 * 119.99499 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.04137 * 179.97438 * 22 12 11 41 41 H 1.07994 * 119.96237 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6514 -2.1367 1.1904 6 6 2.1248 -2.8623 2.3768 7 1 2.0808 -2.2058 3.2457 8 6 3.5685 -3.3173 2.1539 9 6 1.2493 -4.0662 2.6118 10 6 0.8055 -4.8169 1.5384 11 6 0.0078 -5.9240 1.7509 12 6 -0.3582 -6.2765 3.0433 13 8 -1.1464 -7.3613 3.2551 14 6 -1.3693 -7.7151 4.5368 15 1 -0.9964 -7.0973 5.3403 16 6 -2.0773 -8.8723 4.8235 17 7 -2.5320 -9.6247 3.8448 18 14 -2.3867 -9.3622 6.5993 19 1 -3.6636 -8.7626 7.0630 20 1 -2.4701 -10.8416 6.6974 21 1 -1.2721 -8.8719 7.4495 22 6 0.0844 -5.5174 4.1187 23 6 0.8862 -4.4144 3.9000 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 1.9881 -2.5693 0.3434 34 1 4.2017 -2.4466 1.9839 35 1 3.9198 -3.8553 3.0343 36 1 3.6125 -3.9738 1.2849 37 1 1.0871 -4.5398 0.5332 38 1 -0.3348 -6.5123 0.9125 39 1 -3.0277 -10.4340 4.0454 40 1 -0.1989 -5.7887 5.1250 41 1 1.2310 -3.8240 4.7360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037186708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:55 Heat of formation + Delta-G solvation = -39.589095 kcal Electronic energy + Delta-G solvation = -19345.202103 eV Core-core repulsion = 16417.237763 eV Total energy + Delta-G solvation = -2927.964340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82646 -39.21131 -37.73528 -35.50393 -34.20401 -31.82618 -31.18647 -29.21924 -27.88315 -27.34172 -25.83682 -23.95158 -23.28830 -21.59495 -20.86106 -19.72874 -18.78831 -16.96264 -16.52036 -16.17599 -16.11432 -15.84292 -15.49457 -15.32991 -14.99163 -14.44177 -14.37894 -14.11340 -13.99130 -13.55370 -13.49460 -13.28719 -12.98369 -12.95335 -12.68858 -12.55446 -12.35120 -12.15425 -12.07343 -11.87639 -11.74665 -11.55769 -11.35138 -11.13159 -10.76586 -9.72206 -9.21080 -8.82321 -8.45574 -6.13485 0.65334 0.76677 1.34936 1.44600 1.52658 2.18883 2.84034 3.15714 3.36600 3.56441 3.97296 4.01833 4.12614 4.16047 4.23045 4.34455 4.40563 4.43292 4.64520 4.70474 4.74723 4.82659 4.86615 4.89976 4.92132 4.98806 5.11645 5.14310 5.18739 5.19920 5.29684 5.32322 5.34414 5.51677 5.58245 5.63932 5.75535 5.83913 6.05528 6.23847 6.31829 6.59062 6.99340 7.82078 8.78091 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037165 B = 0.003490 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.224817 B = 8021.326800 C = 8186.394090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 C -0.143 4.143 4 C 0.067 3.933 5 N -0.689 5.689 6 C 0.145 3.855 7 H 0.084 0.916 8 C -0.170 4.170 9 C -0.140 4.140 10 C -0.046 4.046 11 C -0.207 4.207 12 C 0.109 3.891 13 O -0.236 6.236 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.923 5.923 18 Si 1.019 2.981 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.253 1.253 22 C -0.242 4.242 23 C -0.070 4.070 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.344 0.656 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.272 0.728 40 H 0.116 0.884 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.804 19.058 -4.095 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.062 4.062 5 N -0.320 5.320 6 C 0.035 3.965 7 H 0.102 0.898 8 C -0.229 4.229 9 C -0.141 4.141 10 C -0.064 4.064 11 C -0.226 4.226 12 C 0.060 3.940 13 O -0.143 6.143 14 C -0.489 4.489 15 H 0.118 0.882 16 C -0.222 4.222 17 N -0.562 5.562 18 Si 0.838 3.162 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.262 4.262 23 C -0.088 4.088 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.163 0.837 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.957 18.858 -4.029 22.179 hybrid contribution 0.312 -0.865 0.494 1.044 sum 11.269 17.993 -3.535 21.523 Atomic orbital electron populations 1.21708 0.95372 1.01633 1.00825 1.21089 0.96030 0.96352 0.97525 1.21785 1.01122 0.95111 1.02097 1.22051 0.97788 0.87758 0.98607 1.60489 1.64525 1.02612 1.04341 1.20141 0.90920 0.91365 0.94061 0.89834 1.22416 0.96175 1.01758 1.02523 1.19671 1.03214 0.98988 0.92240 1.20659 0.94550 0.91686 0.99498 1.20469 1.06302 1.02152 0.93705 1.19919 0.90736 0.88123 0.95265 1.83938 1.59655 1.40891 1.29804 1.21811 1.36894 1.08921 0.81263 0.88245 1.26593 0.95799 0.94601 1.05169 1.70195 1.36452 1.15053 1.34457 0.84589 0.79535 0.77939 0.74147 1.18821 1.19540 1.17653 1.21206 1.06457 1.00046 0.98450 1.20918 0.95531 0.94965 0.97422 0.93616 0.92902 0.93104 0.91140 0.92153 0.92132 0.92701 0.91769 0.94319 0.83697 0.91202 0.92343 0.92416 0.84087 0.87290 0.91896 0.86603 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.08 71.98 0.65 -1.84 16 2 C -0.09 -1.37 3.06 -10.79 -0.03 -1.40 16 3 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 4 C 0.07 1.10 4.87 86.30 0.42 1.52 16 5 N -0.69 -13.96 5.15 -495.43 -2.55 -16.51 16 6 C 0.14 3.26 2.79 44.17 0.12 3.39 16 7 H 0.08 1.81 7.66 -2.39 -0.02 1.79 16 8 C -0.17 -3.23 9.14 71.98 0.66 -2.57 16 9 C -0.14 -4.40 4.96 -19.83 -0.10 -4.50 16 10 C -0.05 -1.57 9.32 22.25 0.21 -1.36 16 11 C -0.21 -9.14 9.99 22.39 0.22 -8.91 16 12 C 0.11 5.64 6.65 22.58 0.15 5.79 16 13 O -0.24 -14.64 9.76 -22.72 -0.22 -14.86 16 14 C -0.41 -24.67 9.49 67.92 0.64 -24.03 16 15 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 16 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 17 N -0.92 -57.85 13.67 21.61 0.30 -57.56 16 18 Si 1.02 43.71 29.55 68.60 2.03 45.74 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 22 C -0.24 -10.89 9.17 22.39 0.21 -10.68 16 23 C -0.07 -2.47 9.66 22.25 0.21 -2.25 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 1.12 7.75 -2.39 -0.02 1.10 16 27 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 1.15 8.05 -2.39 -0.02 1.13 16 32 H 0.04 0.55 7.44 -2.39 -0.02 0.54 16 33 H 0.34 6.30 7.81 -89.70 -0.70 5.60 16 34 H 0.07 1.06 7.45 -2.39 -0.02 1.04 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 37 H 0.14 3.90 7.23 -2.91 -0.02 3.88 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 40 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 41 H 0.14 3.90 8.03 -2.91 -0.02 3.88 16 Total: -1.00 -70.12 336.08 4.35 -65.77 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.30 Total: 26.32 kcal Atomic # 6 Polarization: -53.39 SS G_CDS: 4.50 Total: -48.89 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -2.25 Total: -74.07 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -70.12 4.35 -65.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037186708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.179 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds