Wall clock time and date at job start Mon Mar 30 2020 01:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86798 * 119.99871 * 2 1 4 4 H 1.48503 * 109.46865 * 270.00164 * 3 2 1 5 5 H 1.48501 * 109.47181 * 29.99887 * 3 2 1 6 6 H 1.48493 * 109.47221 * 150.00304 * 3 2 1 7 7 C 1.38987 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00371 * 180.02562 * 7 2 1 9 9 N 1.37326 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.36492 * 126.06483 * 180.02562 * 9 7 2 11 11 C 1.35681 * 107.50727 * 179.97438 * 10 9 7 12 12 N 1.40595 * 126.08053 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99644 * 180.02562 * 12 11 10 14 14 O 1.21303 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 H 1.09000 * 112.41841 * 314.66501 * 16 15 13 18 18 C 1.52877 * 113.05400 * 185.18491 * 16 15 13 19 19 C 1.50379 * 82.51835 * 244.54811 * 18 16 15 20 20 O 1.21277 * 131.84320 * 179.97438 * 19 18 16 21 21 N 1.34606 * 96.31031 * 0.03009 * 19 18 16 22 22 C 1.40646 * 107.83618 * 0.26349 * 11 10 9 23 23 N 1.30908 * 108.38747 * 359.55241 * 22 11 10 24 24 H 0.96987 * 120.00237 * 359.97438 * 1 2 3 25 25 H 1.07998 * 126.24878 * 359.95347 * 10 9 7 26 26 H 0.96995 * 120.00346 * 359.97438 * 12 11 10 27 27 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 28 28 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 29 29 H 1.09000 * 114.37808 * 357.93630 * 18 16 15 30 30 H 1.08993 * 114.38272 * 131.14769 * 18 16 15 31 31 H 0.97006 * 134.66600 * 179.97438 * 21 19 18 32 32 H 1.07999 * 125.81093 * 179.74039 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4444 2.6527 0.7000 6 1 3.5445 1.4402 0.6999 7 6 2.0080 -1.2036 -0.0005 8 1 3.0879 -1.2037 -0.0001 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6404 -0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9893 -5.9383 -0.0003 13 6 -0.1099 -6.7182 -0.0001 14 8 -1.2125 -6.2125 0.0007 15 6 0.0308 -8.2186 0.0001 16 6 -1.3577 -8.8611 0.0009 17 1 -2.0321 -8.3927 0.7177 18 6 -1.3127 -10.3839 0.1283 19 6 -1.9080 -10.3204 -1.2512 20 8 -2.2480 -11.1889 -2.0264 21 7 -1.9361 -8.9774 -1.3385 22 6 -0.3511 -3.8199 -0.0058 23 7 -0.0715 -2.5411 0.0000 24 1 -0.4850 0.8399 0.0004 25 1 2.9302 -3.8708 -0.0012 26 1 1.8709 -6.3427 -0.0013 27 1 0.5763 -8.5325 -0.8899 28 1 0.5764 -8.5323 0.8901 29 1 -0.3070 -10.8028 0.1649 30 1 -1.9799 -10.7918 0.8875 31 1 -2.2233 -8.3439 -2.0146 32 1 -1.3418 -4.2500 -0.0108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464524074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:34 Heat of formation + Delta-G solvation = 42.491614 kcal Electronic energy + Delta-G solvation = -18843.208646 eV Core-core repulsion = 15614.004244 eV Total energy + Delta-G solvation = -3229.204402 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -41.19305 -39.86804 -38.56541 -36.63500 -34.26248 -33.20855 -30.96625 -30.18324 -28.76720 -27.52091 -24.90236 -22.84830 -21.05049 -20.29623 -19.92030 -19.46208 -17.71066 -17.26236 -16.75295 -16.58433 -15.71883 -15.47704 -15.12122 -14.91050 -14.07618 -13.53275 -13.53021 -13.10492 -12.95694 -12.82601 -12.33241 -11.96683 -11.72649 -11.61453 -11.47137 -11.28461 -10.98894 -10.56339 -10.21829 -10.17038 -9.39201 -9.23073 -9.20677 -8.84874 -8.10508 -6.75324 -6.59335 -4.26910 2.39525 2.75460 2.99218 3.02351 3.07705 3.22303 3.48159 3.63405 3.77159 3.84975 4.36812 4.43034 4.49554 4.72931 4.95977 4.98659 5.17734 5.27645 5.35277 5.38981 5.81504 6.19527 6.21210 6.40759 6.85255 6.90482 6.91001 7.06283 7.19812 7.81828 8.11296 8.19585 8.23901 8.58155 8.78799 9.33620 9.62763 10.36658 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.068126 B = 0.003375 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.907191 B = 8293.881724 C = 8490.901443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.084 4.084 11 C -0.063 4.063 12 N -0.623 5.623 13 C 0.496 3.504 14 O -0.537 6.537 15 C -0.147 4.147 16 C 0.143 3.857 17 H 0.109 0.891 18 C -0.173 4.173 19 C 0.516 3.484 20 O -0.529 6.529 21 N -0.727 5.727 22 C -0.033 4.033 23 N -0.261 5.261 24 H 0.275 0.725 25 H 0.145 0.855 26 H 0.397 0.603 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.420 0.580 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -13.522 2.400 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.235 4.235 11 C -0.168 4.168 12 N -0.265 5.265 13 C 0.282 3.718 14 O -0.415 6.415 15 C -0.189 4.189 16 C 0.037 3.963 17 H 0.127 0.873 18 C -0.213 4.213 19 C 0.301 3.699 20 O -0.404 6.404 21 N -0.387 5.387 22 C -0.209 4.209 23 N -0.092 5.092 24 H 0.086 0.914 25 H 0.163 0.837 26 H 0.230 0.770 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.264 0.736 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.782 -12.238 1.944 12.519 hybrid contribution 1.256 0.134 -0.339 1.308 sum 3.038 -12.104 1.605 12.582 Atomic orbital electron populations 1.70211 1.06139 1.28032 1.35238 1.25646 0.95712 1.00294 0.95461 0.85823 0.79386 0.79925 0.78990 1.19579 1.20063 1.18800 1.19878 0.91666 0.80560 1.53496 0.86607 1.44558 1.04049 1.03325 1.39040 1.21272 0.96851 0.85415 1.20006 1.17283 0.94277 0.81362 1.23917 1.42534 1.08263 1.04608 1.71133 1.20268 0.84624 0.88456 0.78445 1.90612 1.25757 1.74999 1.50144 1.21978 0.98325 0.93278 1.05286 1.21839 0.94341 0.94760 0.85349 0.87309 1.23567 1.04593 0.96008 0.97137 1.21901 0.77297 0.82467 0.88237 1.90726 1.51007 1.46524 1.52141 1.47924 1.63874 1.07893 1.19057 1.24098 0.97999 0.90748 1.08005 1.78260 0.90131 1.15122 1.25713 0.91433 0.83735 0.77004 0.88397 0.87277 0.86148 0.86020 0.73621 0.80768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.29 11.81 55.50 0.66 -20.64 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.93 18.65 29.55 -169.99 -5.02 13.63 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.32 -8.44 10.25 -14.81 -0.15 -8.60 16 8 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 9 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 10 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 11 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 12 N -0.62 -9.95 5.47 -10.00 -0.05 -10.00 16 13 C 0.50 7.35 7.80 -10.98 -0.09 7.26 16 14 O -0.54 -10.13 12.93 5.54 0.07 -10.05 16 15 C -0.15 -1.29 5.59 -27.88 -0.16 -1.44 16 16 C 0.14 1.29 3.72 -80.34 -0.30 0.99 16 17 H 0.11 1.07 7.71 -51.93 -0.40 0.67 16 18 C -0.17 -1.18 8.14 -28.10 -0.23 -1.41 16 19 C 0.52 5.98 9.37 -23.48 -0.22 5.76 16 20 O -0.53 -8.39 18.03 5.56 0.10 -8.29 16 21 N -0.73 -7.95 7.45 -76.39 -0.57 -8.52 16 22 C -0.03 -0.84 10.85 -17.04 -0.18 -1.03 16 23 N -0.26 -7.48 10.40 30.80 0.32 -7.16 16 24 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 26 H 0.40 4.68 8.82 -40.82 -0.36 4.32 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.12 0.55 8.00 -51.93 -0.42 0.14 16 30 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.42 4.74 8.96 -40.82 -0.37 4.37 16 32 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 LS Contribution 288.34 15.07 4.35 4.35 Total: -1.00 -35.67 288.34 -5.48 -41.15 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -3.09 Total: 10.88 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.19 Total: -1.47 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.31 Total: -50.20 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.17 Total: -18.34 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.67 -5.48 -41.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464524074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.641 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds