Wall clock time and date at job start Mon Mar 30 2020 01:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86798 * 119.99871 * 2 1 4 4 H 1.48503 * 109.46865 * 270.00164 * 3 2 1 5 5 H 1.48501 * 109.47181 * 29.99887 * 3 2 1 6 6 H 1.48493 * 109.47221 * 150.00304 * 3 2 1 7 7 C 1.38987 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00371 * 180.02562 * 7 2 1 9 9 N 1.37326 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.36492 * 126.06483 * 180.02562 * 9 7 2 11 11 C 1.35681 * 107.50727 * 179.97438 * 10 9 7 12 12 N 1.40595 * 126.08053 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99644 * 180.02562 * 12 11 10 14 14 O 1.21303 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 H 1.09000 * 112.41841 * 314.66501 * 16 15 13 18 18 C 1.52877 * 113.05400 * 185.18491 * 16 15 13 19 19 C 1.50379 * 82.51835 * 244.54811 * 18 16 15 20 20 O 1.21277 * 131.84320 * 179.97438 * 19 18 16 21 21 N 1.34606 * 96.31031 * 0.03009 * 19 18 16 22 22 C 1.40646 * 107.83618 * 0.26349 * 11 10 9 23 23 N 1.30908 * 108.38747 * 359.55241 * 22 11 10 24 24 H 0.96987 * 120.00237 * 359.97438 * 1 2 3 25 25 H 1.07998 * 126.24878 * 359.95347 * 10 9 7 26 26 H 0.96995 * 120.00346 * 359.97438 * 12 11 10 27 27 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 28 28 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 29 29 H 1.09000 * 114.37808 * 357.93630 * 18 16 15 30 30 H 1.08993 * 114.38272 * 131.14769 * 18 16 15 31 31 H 0.97006 * 134.66600 * 179.97438 * 21 19 18 32 32 H 1.07999 * 125.81093 * 179.74039 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4444 2.6527 0.7000 6 1 3.5445 1.4402 0.6999 7 6 2.0080 -1.2036 -0.0005 8 1 3.0879 -1.2037 -0.0001 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6404 -0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9893 -5.9383 -0.0003 13 6 -0.1099 -6.7182 -0.0001 14 8 -1.2125 -6.2125 0.0007 15 6 0.0308 -8.2186 0.0001 16 6 -1.3577 -8.8611 0.0009 17 1 -2.0321 -8.3927 0.7177 18 6 -1.3127 -10.3839 0.1283 19 6 -1.9080 -10.3204 -1.2512 20 8 -2.2480 -11.1889 -2.0264 21 7 -1.9361 -8.9774 -1.3385 22 6 -0.3511 -3.8199 -0.0058 23 7 -0.0715 -2.5411 0.0000 24 1 -0.4850 0.8399 0.0004 25 1 2.9302 -3.8708 -0.0012 26 1 1.8709 -6.3427 -0.0013 27 1 0.5763 -8.5325 -0.8899 28 1 0.5764 -8.5323 0.8901 29 1 -0.3070 -10.8028 0.1649 30 1 -1.9799 -10.7918 0.8875 31 1 -2.2233 -8.3439 -2.0146 32 1 -1.3418 -4.2500 -0.0108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464524074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:33 Heat of formation + Delta-G solvation = 12.129565 kcal Electronic energy + Delta-G solvation = -18844.525244 eV Core-core repulsion = 15614.004244 eV Total energy + Delta-G solvation = -3230.521000 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07181 -41.53610 -39.98572 -37.62939 -35.86042 -34.91860 -32.35390 -31.67361 -29.76930 -28.96339 -26.72948 -23.88129 -22.78295 -21.65309 -21.13083 -20.63909 -19.31936 -18.29707 -17.87053 -17.52390 -17.37007 -16.84454 -16.48072 -16.11664 -15.65183 -15.14423 -14.85414 -14.71334 -14.18075 -13.68161 -13.48784 -13.26062 -13.02971 -12.87356 -12.83604 -12.64160 -12.36698 -12.08626 -11.78258 -11.10183 -10.98487 -10.80891 -10.59034 -10.21731 -10.08621 -8.48622 -8.46227 -6.23075 1.24995 1.40104 1.53926 1.56944 1.58827 1.90939 2.07884 2.34370 2.47468 2.58119 2.94099 3.07214 3.09976 3.71286 3.77845 4.13350 4.43433 4.47977 4.64162 4.68316 4.74770 4.89531 5.01757 5.12507 5.18406 5.32014 5.44737 5.55002 5.97740 6.02762 6.35305 6.76338 6.84778 7.31687 7.46048 7.52391 7.71920 8.53204 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.068126 B = 0.003375 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.907191 B = 8293.881724 C = 8490.901443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.007 4.007 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.243 1.243 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.171 5.171 10 C -0.083 4.083 11 C -0.043 4.043 12 N -0.619 5.619 13 C 0.492 3.508 14 O -0.581 6.581 15 C -0.130 4.130 16 C 0.137 3.863 17 H 0.099 0.901 18 C -0.138 4.138 19 C 0.502 3.498 20 O -0.582 6.582 21 N -0.737 5.737 22 C -0.061 4.061 23 N -0.314 5.314 24 H 0.275 0.725 25 H 0.187 0.813 26 H 0.421 0.579 27 H 0.120 0.880 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.411 0.589 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 -15.205 3.401 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.166 1.166 7 C -0.486 4.486 8 H 0.158 0.842 9 N 0.059 4.941 10 C -0.233 4.233 11 C -0.150 4.150 12 N -0.264 5.264 13 C 0.281 3.719 14 O -0.460 6.460 15 C -0.170 4.170 16 C 0.031 3.969 17 H 0.117 0.883 18 C -0.177 4.177 19 C 0.290 3.710 20 O -0.462 6.462 21 N -0.395 5.395 22 C -0.236 4.236 23 N -0.146 5.146 24 H 0.085 0.915 25 H 0.204 0.796 26 H 0.258 0.742 27 H 0.138 0.862 28 H 0.174 0.826 29 H 0.175 0.825 30 H 0.164 0.836 31 H 0.254 0.746 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.679 -13.968 2.971 15.028 hybrid contribution 0.316 0.483 -0.657 0.874 sum 4.995 -13.485 2.314 14.566 Atomic orbital electron populations 1.70397 1.08415 1.28995 1.37658 1.26864 0.96457 1.04327 0.94207 0.84603 0.78337 0.74162 0.79169 1.19021 1.20300 1.16643 1.20597 0.92930 0.80973 1.54099 0.84216 1.44833 1.03611 1.04866 1.40742 1.22050 0.98928 0.84257 1.18041 1.17372 0.92480 0.84365 1.20748 1.42559 1.10272 1.01995 1.71562 1.21502 0.83398 0.90945 0.76017 1.90610 1.27612 1.76418 1.51405 1.22035 0.98825 0.87589 1.08554 1.21997 0.94267 0.96625 0.83969 0.88329 1.23651 1.06536 0.93757 0.93774 1.22889 0.76589 0.81884 0.89666 1.90695 1.53365 1.47873 1.54239 1.48254 1.63526 1.08009 1.19698 1.24184 0.99139 0.90892 1.09409 1.78142 0.92105 1.16883 1.27435 0.91505 0.79562 0.74151 0.86160 0.82550 0.82542 0.83638 0.74639 0.81511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.67 11.81 21.66 0.26 -47.42 16 2 C -0.01 -0.38 5.50 84.95 0.47 0.09 16 3 Si 1.02 38.29 29.55 68.60 2.03 40.32 16 4 H -0.27 -9.64 7.11 99.48 0.71 -8.94 16 5 H -0.28 -10.39 7.11 99.48 0.71 -9.69 16 6 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 7 C -0.36 -18.60 10.25 84.01 0.86 -17.74 16 8 H 0.14 6.31 7.83 -2.91 -0.02 6.29 16 9 N -0.17 -9.36 3.74 -190.01 -0.71 -10.07 16 10 C -0.08 -3.67 11.49 83.38 0.96 -2.71 16 11 C -0.04 -1.87 6.90 37.73 0.26 -1.61 16 12 N -0.62 -18.08 5.47 -303.92 -1.66 -19.74 16 13 C 0.49 13.46 7.80 87.66 0.68 14.14 16 14 O -0.58 -21.79 12.93 -3.10 -0.04 -21.83 16 15 C -0.13 -1.68 5.59 29.85 0.17 -1.51 16 16 C 0.14 2.04 3.72 37.03 0.14 2.18 16 17 H 0.10 1.74 7.71 -2.39 -0.02 1.72 16 18 C -0.14 -1.28 8.14 29.71 0.24 -1.04 16 19 C 0.50 10.81 9.37 79.64 0.75 11.56 16 20 O -0.58 -18.34 18.03 -3.02 -0.05 -18.39 16 21 N -0.74 -15.31 7.45 -514.08 -3.83 -19.14 16 22 C -0.06 -3.22 10.85 85.42 0.93 -2.29 16 23 N -0.31 -18.70 10.40 -56.47 -0.59 -19.28 16 24 H 0.28 14.62 8.31 -92.72 -0.77 13.85 16 25 H 0.19 6.42 8.06 -2.91 -0.02 6.39 16 26 H 0.42 8.14 8.82 -92.71 -0.82 7.32 16 27 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.16 0.42 8.00 -2.39 -0.02 0.40 16 30 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.41 9.41 8.96 -92.70 -0.83 8.58 16 32 H 0.17 8.88 5.92 -2.91 -0.02 8.86 16 Total: -1.00 -85.05 288.34 0.39 -84.66 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.46 Total: 29.83 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.45 Total: 1.07 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -6.53 Total: -115.65 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.09 Total: -40.22 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -85.05 0.39 -84.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464524074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.788 kcal (2) G-P(sol) polarization free energy of solvation -85.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds