Wall clock time and date at job start Mon Mar 30 2020 00:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38684 * 119.27816 * 2 1 4 4 C 1.38001 * 119.62463 * 180.02562 * 3 2 1 5 5 C 1.41004 * 118.28606 * 0.24639 * 4 3 2 6 6 C 1.41017 * 120.70852 * 179.74780 * 5 4 3 7 7 H 1.07995 * 119.99804 * 150.04075 * 6 5 4 8 8 C 1.39941 * 120.00282 * 330.04834 * 6 5 4 9 9 N 1.30866 * 120.00601 * 162.11638 * 8 6 5 10 10 Si 1.86800 * 119.99782 * 342.11240 * 8 6 5 11 11 H 1.48502 * 109.47002 * 95.38009 * 10 8 6 12 12 H 1.48508 * 109.47275 * 215.37771 * 10 8 6 13 13 H 1.48496 * 109.47399 * 335.38169 * 10 8 6 14 14 C 1.41715 * 118.58307 * 359.53996 * 5 4 3 15 15 N 1.38087 * 119.90195 * 180.22129 * 14 5 4 16 16 C 1.46502 * 119.99965 * 180.25249 * 15 14 5 17 17 C 1.52998 * 109.47164 * 180.02562 * 16 15 14 18 18 O 1.43746 * 109.63543 * 58.90186 * 17 16 15 19 19 C 1.44581 * 104.92213 * 215.71317 * 18 17 16 20 20 C 1.54912 * 101.63864 * 36.26809 * 19 18 17 21 21 O 1.43367 * 109.63017 * 299.69117 * 17 16 15 22 22 N 1.31968 * 119.27418 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47380 * 89.99340 * 1 2 3 24 24 H 1.08999 * 109.47012 * 210.00031 * 1 2 3 25 25 H 1.09005 * 109.46779 * 329.99561 * 1 2 3 26 26 H 1.07997 * 120.18685 * 359.97438 * 3 2 1 27 27 H 1.08005 * 120.85873 * 179.97438 * 4 3 2 28 28 H 0.96995 * 120.00427 * 179.97438 * 9 8 6 29 29 H 0.96999 * 120.00103 * 0.24900 * 15 14 5 30 30 H 1.09006 * 109.46711 * 299.99698 * 16 15 14 31 31 H 1.08996 * 109.47337 * 59.99486 * 16 15 14 32 32 H 1.09002 * 109.62684 * 179.29753 * 17 16 15 33 33 H 1.08998 * 111.08296 * 278.15531 * 19 18 17 34 34 H 1.09002 * 110.98422 * 154.33538 * 19 18 17 35 35 H 1.08994 * 110.69447 * 205.96095 * 20 19 18 36 36 H 1.08998 * 110.84216 * 82.82507 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2097 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2409 -0.0196 -0.0064 6 6 5.6502 -0.0706 -0.0126 7 1 6.1624 -0.9011 0.4503 8 6 6.3849 0.9548 -0.6183 9 7 7.6537 1.1059 -0.3355 10 14 5.5546 2.1081 -1.8307 11 1 5.1125 3.3362 -1.1224 12 1 6.5146 2.4738 -2.9031 13 1 4.3766 1.4314 -2.4304 14 6 3.4736 -1.2110 -0.0015 15 7 4.1073 -2.4379 -0.0024 16 6 3.3161 -3.6709 -0.0029 17 6 4.2548 -4.8792 -0.0033 18 8 5.1032 -4.8320 1.1561 19 6 6.3745 -5.3556 0.7087 20 6 6.4505 -4.8000 -0.7354 21 8 5.0785 -4.8487 -1.1763 22 7 2.1524 -1.1511 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6366 2.1399 -0.0004 27 1 4.1136 2.1485 -0.0010 28 1 8.1630 1.8164 -0.7557 29 1 5.0762 -2.4834 -0.0028 30 1 2.6877 -3.6997 0.8873 31 1 2.6871 -3.6987 -0.8926 32 1 3.6687 -5.7981 0.0089 33 1 6.3711 -6.4456 0.7077 34 1 7.1917 -4.9705 1.3185 35 1 7.0787 -5.4351 -1.3599 36 1 6.8195 -3.7743 -0.7373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158201708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:03 Heat of formation + Delta-G solvation = -58.427978 kcal Electronic energy + Delta-G solvation = -20279.849371 eV Core-core repulsion = 17149.809110 eV Total energy + Delta-G solvation = -3130.040261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31262 -38.74678 -34.94986 -34.84805 -33.97528 -31.64876 -30.94444 -29.42854 -27.95224 -26.67747 -23.73045 -23.18711 -22.29915 -20.81206 -20.72263 -17.47615 -17.35661 -16.73581 -16.31574 -15.59030 -15.34418 -15.01149 -14.35048 -13.85852 -13.58333 -13.51481 -13.32934 -12.96928 -12.78452 -12.53291 -12.45985 -12.02547 -11.90171 -11.67172 -11.49301 -11.35819 -11.12983 -10.70299 -10.24935 -10.16839 -9.90160 -9.50363 -9.35748 -8.98550 -8.12917 -8.08960 -6.92787 -6.66658 -4.31272 2.56323 2.80975 3.11568 3.21420 3.33973 3.49470 4.00018 4.07320 4.28420 4.58816 4.61889 4.89238 5.06145 5.28653 5.36548 5.42423 5.45840 5.68957 5.81488 5.94737 5.96486 6.07830 6.20080 6.25900 6.34283 6.42441 6.49907 6.66671 6.93925 7.12028 7.13803 7.34890 7.60930 7.84566 8.11374 8.34126 8.45071 8.73607 8.83346 9.62634 10.09569 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.008289 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.465852 B = 3377.248078 C = 4821.311871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.030 3.970 3 C -0.170 4.170 4 C -0.196 4.196 5 C 0.013 3.987 6 C -0.441 4.441 7 H 0.088 0.912 8 C 0.086 3.914 9 N -0.813 5.813 10 Si 0.909 3.091 11 H -0.271 1.271 12 H -0.292 1.292 13 H -0.247 1.247 14 C 0.333 3.667 15 N -0.714 5.714 16 C 0.133 3.867 17 C 0.221 3.779 18 O -0.370 6.370 19 C 0.016 3.984 20 C 0.018 3.982 21 O -0.380 6.380 22 N -0.528 5.528 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.284 0.716 29 H 0.407 0.593 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 -8.793 -0.543 9.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 C -0.192 4.192 4 C -0.222 4.222 5 C 0.005 3.995 6 C -0.471 4.471 7 H 0.105 0.895 8 C -0.132 4.132 9 N -0.439 5.439 10 Si 0.736 3.264 11 H -0.198 1.198 12 H -0.219 1.219 13 H -0.170 1.170 14 C 0.093 3.907 15 N -0.354 5.354 16 C 0.007 3.993 17 C 0.126 3.874 18 O -0.291 6.291 19 C -0.061 4.061 20 C -0.059 4.059 21 O -0.300 6.300 22 N -0.247 5.247 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.244 0.756 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.049 -9.479 -0.549 9.973 hybrid contribution 0.872 1.337 -0.490 1.670 sum -2.177 -8.143 -1.039 8.492 Atomic orbital electron populations 1.20304 0.91382 1.00984 1.00587 1.19990 0.94524 0.87735 1.07992 1.21079 0.94626 0.97089 1.06434 1.21010 0.93578 0.96649 1.10927 1.18052 0.94316 0.90353 0.96778 1.19039 0.89219 1.07046 1.31833 0.89451 1.26034 0.94663 0.96345 0.96183 1.69695 1.08938 1.29199 1.36031 0.86321 0.79814 0.80238 0.80038 1.19751 1.21927 1.17029 1.18360 0.87789 0.85503 0.99083 1.43527 1.07780 1.00802 1.83293 1.21431 0.92834 0.82911 1.02081 1.24502 0.89804 0.98474 0.74659 1.89273 1.22707 1.84875 1.32208 1.24348 0.87431 0.99109 0.95176 1.24256 0.84065 1.02836 0.94713 1.88920 1.16237 1.95619 1.29274 1.66402 1.08152 1.29844 1.20263 0.93011 0.92489 0.92734 0.88274 0.87515 0.90601 0.75556 0.91392 0.91083 0.89164 0.90948 0.87251 0.88443 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.01 0.37 -0.94 16 2 C 0.03 0.67 6.79 -82.37 -0.56 0.11 16 3 C -0.17 -3.87 9.69 -39.50 -0.38 -4.25 16 4 C -0.20 -4.88 7.28 -38.62 -0.28 -5.16 16 5 C 0.01 0.33 5.12 -106.47 -0.55 -0.22 16 6 C -0.44 -11.71 8.94 -37.89 -0.34 -12.05 16 7 H 0.09 2.38 7.02 -52.49 -0.37 2.01 16 8 C 0.09 2.23 5.42 -17.33 -0.09 2.14 16 9 N -0.81 -21.35 13.93 55.55 0.77 -20.57 16 10 Si 0.91 21.12 24.53 -169.99 -4.17 16.95 16 11 H -0.27 -6.13 6.71 56.52 0.38 -5.75 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.25 -6.02 6.85 56.52 0.39 -5.63 16 14 C 0.33 8.18 7.52 -155.03 -1.17 7.02 16 15 N -0.71 -15.41 5.39 -59.97 -0.32 -15.73 16 16 C 0.13 2.39 5.80 -4.04 -0.02 2.37 16 17 C 0.22 3.32 4.20 37.16 0.16 3.48 16 18 O -0.37 -5.72 11.04 -59.05 -0.65 -6.37 16 19 C 0.02 0.18 7.95 38.17 0.30 0.49 16 20 C 0.02 0.23 7.69 38.17 0.29 0.52 16 21 O -0.38 -5.94 10.99 -59.05 -0.65 -6.59 16 22 N -0.53 -12.55 9.44 -8.11 -0.08 -12.63 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.11 2.62 4.82 -52.48 -0.25 2.37 16 28 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 29 H 0.41 8.80 5.75 -40.82 -0.23 8.57 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.20 7.79 -51.93 -0.40 0.80 16 LS Contribution 297.48 15.07 4.48 4.48 Total: -1.00 -29.96 297.48 -7.54 -37.50 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.66 Total: 9.45 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.27 Total: -6.49 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.37 Total: -48.93 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.30 Total: -12.96 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.17 Total: 16.95 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.96 -7.54 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158201708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.927 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds