Wall clock time and date at job start Mon Mar 30 2020 00:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99855 * 2 1 4 4 N 1.46504 * 109.47046 * 125.00628 * 3 2 1 5 5 C 1.46501 * 119.99689 * 263.68428 * 4 3 2 6 6 C 1.50699 * 109.47054 * 269.99386 * 5 4 3 7 7 H 1.08001 * 119.99985 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99998 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99929 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99909 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47443 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46808 * 120.00233 * 10 8 6 13 13 H 1.48502 * 109.47414 * 240.00214 * 10 8 6 14 14 C 1.34778 * 119.99922 * 83.68053 * 4 3 2 15 15 O 1.21684 * 119.99665 * 184.35762 * 14 4 3 16 16 C 1.46715 * 120.00170 * 4.35825 * 14 4 3 17 17 O 1.35345 * 126.64325 * 353.83746 * 16 14 4 18 18 C 1.33674 * 107.68535 * 180.02562 * 17 16 14 19 19 C 1.50699 * 125.42485 * 180.02562 * 18 17 16 20 20 N 1.30615 * 109.15160 * 0.02562 * 18 17 16 21 21 C 1.33695 * 108.99830 * 0.02562 * 20 18 17 22 22 C 1.50701 * 126.27457 * 179.73496 * 21 20 18 23 23 H 1.07996 * 119.99806 * 180.02562 * 1 2 3 24 24 H 1.07995 * 120.00095 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00498 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47334 * 5.00577 * 3 2 1 27 27 H 1.08996 * 109.47188 * 245.00089 * 3 2 1 28 28 H 1.09001 * 109.47498 * 30.00014 * 5 4 3 29 29 H 1.09003 * 109.46537 * 149.99911 * 5 4 3 30 30 H 0.96999 * 119.99930 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46673 * 270.00083 * 19 18 17 32 32 H 1.09004 * 109.46815 * 29.99770 * 19 18 17 33 33 H 1.08996 * 109.47005 * 149.99599 * 19 18 17 34 34 H 1.08998 * 109.47118 * 90.01987 * 22 21 20 35 35 H 1.09000 * 109.46879 * 210.02176 * 22 21 20 36 36 H 1.08997 * 109.46984 * 330.02141 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6071 1.9890 2.3823 6 6 3.0173 3.4383 2.3361 7 1 3.5159 3.8308 1.4621 8 6 2.7553 4.2635 3.4091 9 7 2.1478 3.7857 4.4731 10 14 3.2632 6.0602 3.3515 11 1 3.9242 6.3464 2.0529 12 1 2.0603 6.9194 3.4940 13 1 4.2081 6.3434 4.4615 14 6 4.2055 0.7519 1.0213 15 8 4.9469 0.7043 1.9850 16 6 4.6303 0.1779 -0.2603 17 8 3.8777 0.0520 -1.3781 18 6 4.6382 -0.5191 -2.3175 19 6 4.1958 -0.8444 -3.7209 20 7 5.8258 -0.7503 -1.8253 21 6 5.8592 -0.3338 -0.5553 22 6 7.0376 -0.4189 0.3802 23 1 -0.5399 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3585 2.1317 0.0897 27 1 2.6212 1.4027 -0.9313 28 1 1.5267 1.9210 2.5096 29 1 3.1032 1.4975 3.2193 30 1 1.9637 4.3662 5.2282 31 1 3.7787 -1.8512 -3.7461 32 1 3.4372 -0.1287 -4.0377 33 1 5.0515 -0.7886 -4.3937 34 1 7.6364 0.4878 0.2937 35 1 6.6811 -0.5225 1.4051 36 1 7.6476 -1.2834 0.1185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293931756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:35 Heat of formation + Delta-G solvation = 8.892757 kcal Electronic energy + Delta-G solvation = -20221.753364 eV Core-core repulsion = 17094.632349 eV Total energy + Delta-G solvation = -3127.121015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.26563 -38.96270 -36.10359 -34.87480 -33.32207 -32.62007 -32.11319 -29.27147 -28.31088 -26.77706 -25.39827 -23.23479 -21.70434 -21.21464 -20.08876 -19.21093 -17.06406 -16.80554 -16.50226 -15.69508 -15.57805 -14.70196 -14.40839 -14.22809 -14.10854 -13.41040 -13.22536 -13.04138 -12.90739 -12.70284 -12.56047 -12.22967 -11.93946 -11.68649 -11.37753 -11.08780 -10.92243 -10.82386 -10.70946 -10.53579 -10.24841 -9.70287 -9.34947 -9.18738 -8.59998 -8.49106 -7.81068 -6.10143 -4.15685 1.10793 2.42446 2.57394 2.62528 3.26942 3.34635 3.38538 3.63243 3.82227 4.05045 4.40465 4.85547 4.92219 5.15574 5.17326 5.22252 5.24491 5.33809 5.40426 5.61354 5.71425 5.80554 5.87322 6.00847 6.05291 6.11292 6.28143 6.53165 6.78574 6.85505 6.98630 7.32713 7.41022 7.72559 7.85773 8.14072 8.19942 8.70262 8.91223 9.49662 10.97964 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.006240 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.231325 B = 4486.118213 C = 5168.587157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C 0.132 3.868 4 N -0.578 5.578 5 C 0.246 3.754 6 C -0.531 4.531 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.594 3.406 15 O -0.513 6.513 16 C -0.096 4.096 17 O -0.179 6.179 18 C 0.192 3.808 19 C -0.057 4.057 20 N -0.490 5.490 21 C 0.062 3.938 22 C -0.079 4.079 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -8.762 -14.382 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.178 4.178 3 C 0.008 3.992 4 N -0.308 5.308 5 C 0.128 3.872 6 C -0.569 4.569 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.379 3.621 15 O -0.392 6.392 16 C -0.151 4.151 17 O -0.066 6.066 18 C -0.013 4.013 19 C -0.114 4.114 20 N -0.221 5.221 21 C -0.062 4.062 22 C -0.136 4.136 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.076 -8.952 -14.003 16.655 hybrid contribution -0.415 1.282 0.288 1.377 sum 0.661 -7.671 -13.715 15.729 Atomic orbital electron populations 1.23792 0.95678 1.01756 1.01056 1.23334 0.96239 0.98745 0.99435 1.20800 0.92998 0.95548 0.89822 1.48196 1.13076 1.53030 1.16453 1.19431 0.96257 0.92042 0.79509 1.21448 1.39035 0.94087 1.02376 0.92291 1.24923 0.94935 0.99019 0.95045 1.69941 1.41397 1.36047 1.05699 0.86426 0.78301 0.84413 0.78205 1.19778 1.20889 1.20753 1.16458 0.82827 0.78935 0.83857 1.90816 1.53279 1.59052 1.36017 1.23509 0.92432 1.10838 0.88284 1.84730 1.41046 1.60997 1.19815 1.26470 0.85713 0.94927 0.94193 1.20277 1.03346 1.03389 0.84433 1.70259 1.20317 1.22447 1.09080 1.21976 0.95512 0.97167 0.91528 1.20358 0.92844 1.02603 0.97776 0.88736 0.88234 0.88126 0.88971 0.89819 0.94453 0.93336 0.92645 0.88867 0.89176 0.88203 0.90357 0.88369 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 14.32 29.02 0.42 -2.04 16 2 C -0.16 -2.42 9.04 -36.02 -0.33 -2.74 16 3 C 0.13 2.31 5.45 -5.19 -0.03 2.28 16 4 N -0.58 -12.68 2.46 -177.96 -0.44 -13.12 16 5 C 0.25 6.40 5.17 -5.19 -0.03 6.37 16 6 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 10 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.59 13.08 7.58 -12.84 -0.10 12.98 16 15 O -0.51 -12.69 14.32 5.20 0.07 -12.62 16 16 C -0.10 -1.78 6.78 -36.84 -0.25 -2.03 16 17 O -0.18 -2.82 6.78 4.39 0.03 -2.79 16 18 C 0.19 2.62 8.32 -12.80 -0.11 2.51 16 19 C -0.06 -0.44 10.51 36.01 0.38 -0.06 16 20 N -0.49 -7.80 11.26 -7.07 -0.08 -7.88 16 21 C 0.06 1.08 7.16 -82.46 -0.59 0.49 16 22 C -0.08 -1.22 9.94 36.01 0.36 -0.86 16 23 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 24 H 0.10 1.28 7.84 -52.49 -0.41 0.86 16 25 H 0.10 1.55 7.93 -52.49 -0.42 1.13 16 26 H 0.09 1.62 7.68 -51.93 -0.40 1.22 16 27 H 0.08 1.38 5.36 -51.93 -0.28 1.10 16 28 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 29 H 0.05 1.41 7.36 -51.93 -0.38 1.02 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.66 6.36 -51.93 -0.33 1.33 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -32.61 313.56 -5.38 -37.99 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.72 Total: -0.89 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.69 Total: 3.37 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.22 Total: -46.41 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.10 Total: -15.40 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.61 -5.38 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293931756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.887 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds