Wall clock time and date at job start Mon Mar 30 2020 00:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99855 * 2 1 4 4 N 1.46504 * 109.47046 * 125.00628 * 3 2 1 5 5 C 1.46501 * 119.99689 * 263.68428 * 4 3 2 6 6 C 1.50699 * 109.47054 * 269.99386 * 5 4 3 7 7 H 1.08001 * 119.99985 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99998 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99929 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99909 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47443 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46808 * 120.00233 * 10 8 6 13 13 H 1.48502 * 109.47414 * 240.00214 * 10 8 6 14 14 C 1.34778 * 119.99922 * 83.68053 * 4 3 2 15 15 O 1.21684 * 119.99665 * 184.35762 * 14 4 3 16 16 C 1.46715 * 120.00170 * 4.35825 * 14 4 3 17 17 O 1.35345 * 126.64325 * 353.83746 * 16 14 4 18 18 C 1.33674 * 107.68535 * 180.02562 * 17 16 14 19 19 C 1.50699 * 125.42485 * 180.02562 * 18 17 16 20 20 N 1.30615 * 109.15160 * 0.02562 * 18 17 16 21 21 C 1.33695 * 108.99830 * 0.02562 * 20 18 17 22 22 C 1.50701 * 126.27457 * 179.73496 * 21 20 18 23 23 H 1.07996 * 119.99806 * 180.02562 * 1 2 3 24 24 H 1.07995 * 120.00095 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00498 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47334 * 5.00577 * 3 2 1 27 27 H 1.08996 * 109.47188 * 245.00089 * 3 2 1 28 28 H 1.09001 * 109.47498 * 30.00014 * 5 4 3 29 29 H 1.09003 * 109.46537 * 149.99911 * 5 4 3 30 30 H 0.96999 * 119.99930 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46673 * 270.00083 * 19 18 17 32 32 H 1.09004 * 109.46815 * 29.99770 * 19 18 17 33 33 H 1.08996 * 109.47005 * 149.99599 * 19 18 17 34 34 H 1.08998 * 109.47118 * 90.01987 * 22 21 20 35 35 H 1.09000 * 109.46879 * 210.02176 * 22 21 20 36 36 H 1.08997 * 109.46984 * 330.02141 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6071 1.9890 2.3823 6 6 3.0173 3.4383 2.3361 7 1 3.5159 3.8308 1.4621 8 6 2.7553 4.2635 3.4091 9 7 2.1478 3.7857 4.4731 10 14 3.2632 6.0602 3.3515 11 1 3.9242 6.3464 2.0529 12 1 2.0603 6.9194 3.4940 13 1 4.2081 6.3434 4.4615 14 6 4.2055 0.7519 1.0213 15 8 4.9469 0.7043 1.9850 16 6 4.6303 0.1779 -0.2603 17 8 3.8777 0.0520 -1.3781 18 6 4.6382 -0.5191 -2.3175 19 6 4.1958 -0.8444 -3.7209 20 7 5.8258 -0.7503 -1.8253 21 6 5.8592 -0.3338 -0.5553 22 6 7.0376 -0.4189 0.3802 23 1 -0.5399 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3585 2.1317 0.0897 27 1 2.6212 1.4027 -0.9313 28 1 1.5267 1.9210 2.5096 29 1 3.1032 1.4975 3.2193 30 1 1.9637 4.3662 5.2282 31 1 3.7787 -1.8512 -3.7461 32 1 3.4372 -0.1287 -4.0377 33 1 5.0515 -0.7886 -4.3937 34 1 7.6364 0.4878 0.2937 35 1 6.6811 -0.5225 1.4051 36 1 7.6476 -1.2834 0.1185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293931756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:35 Heat of formation + Delta-G solvation = -13.916351 kcal Electronic energy + Delta-G solvation = -20222.742441 eV Core-core repulsion = 17094.632349 eV Total energy + Delta-G solvation = -3128.110092 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.51118 -40.65326 -37.63574 -36.19335 -35.18962 -33.79852 -33.70078 -30.29510 -30.10997 -28.24632 -26.94979 -25.09248 -22.85132 -22.64992 -21.42432 -20.62500 -18.73630 -18.48419 -18.04364 -17.39174 -16.92529 -16.31878 -16.07975 -15.73317 -15.23161 -14.80775 -14.47757 -14.28017 -14.23399 -13.92590 -13.80636 -13.45139 -13.40829 -13.13182 -13.10400 -12.87079 -12.64498 -12.32112 -12.24769 -12.01898 -11.84481 -11.70123 -11.05465 -10.67709 -10.37337 -9.98947 -9.53570 -8.25791 -6.41026 -0.22348 1.23243 1.32494 1.36525 1.38496 1.38901 1.50734 2.01913 2.30874 2.41467 2.91902 3.04514 3.53761 3.65741 3.97107 4.12742 4.21973 4.36270 4.41605 4.61434 4.63523 4.67130 4.72252 4.85580 4.89519 4.93716 4.99464 5.11945 5.16509 5.35245 5.42460 5.64414 5.69529 5.85059 5.99100 6.37941 6.58107 6.66099 7.05008 7.30678 8.81975 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.006240 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.231325 B = 4486.118213 C = 5168.587157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.180 4.180 3 C 0.133 3.867 4 N -0.586 5.586 5 C 0.264 3.736 6 C -0.547 4.547 7 H 0.052 0.948 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.968 3.032 11 H -0.269 1.269 12 H -0.268 1.268 13 H -0.279 1.279 14 C 0.589 3.411 15 O -0.557 6.557 16 C -0.130 4.130 17 O -0.179 6.179 18 C 0.219 3.781 19 C -0.059 4.059 20 N -0.511 5.511 21 C 0.070 3.930 22 C -0.078 4.078 23 H 0.120 0.880 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.029 0.971 29 H 0.008 0.992 30 H 0.269 0.731 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -8.840 -17.073 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.199 4.199 3 C 0.011 3.989 4 N -0.314 5.314 5 C 0.143 3.857 6 C -0.586 4.586 7 H 0.070 0.930 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.792 3.208 11 H -0.194 1.194 12 H -0.193 1.193 13 H -0.205 1.205 14 C 0.377 3.623 15 O -0.439 6.439 16 C -0.184 4.184 17 O -0.067 6.067 18 C 0.013 3.987 19 C -0.116 4.116 20 N -0.242 5.242 21 C -0.054 4.054 22 C -0.135 4.135 23 H 0.138 0.862 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.552 -9.046 -16.737 19.033 hybrid contribution -0.302 1.200 0.987 1.583 sum 0.250 -7.845 -15.750 17.597 Atomic orbital electron populations 1.24055 0.94923 1.03248 0.97505 1.23108 0.96811 0.97342 1.02627 1.20952 0.92448 0.96914 0.88585 1.48155 1.14163 1.52802 1.16313 1.18885 0.94961 0.91306 0.80505 1.21666 1.39304 0.95157 1.02453 0.92975 1.25811 0.94668 1.03663 0.94485 1.70048 1.42102 1.37843 1.06359 0.85359 0.78358 0.78845 0.78195 1.19361 1.19267 1.20483 1.16801 0.82238 0.78392 0.84855 1.90771 1.54350 1.60807 1.37956 1.22681 0.93379 1.14073 0.88294 1.84699 1.40965 1.61616 1.19404 1.27858 0.84645 0.90967 0.95186 1.20739 1.04850 1.05347 0.80618 1.70358 1.21606 1.23967 1.08266 1.22300 0.95307 0.95446 0.92364 1.20376 0.92716 1.03997 0.96436 0.86166 0.87694 0.88346 0.89406 0.88717 0.95285 0.97432 0.92200 0.86250 0.86895 0.86381 0.89736 0.90383 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 14.32 67.78 0.97 -2.94 16 2 C -0.18 -5.35 9.04 25.65 0.23 -5.12 16 3 C 0.13 4.69 5.45 85.63 0.47 5.15 16 4 N -0.59 -26.77 2.46 -835.17 -2.05 -28.82 16 5 C 0.26 14.45 5.17 85.63 0.44 14.89 16 6 C -0.55 -31.70 9.39 25.60 0.24 -31.46 16 7 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.77 5.46 84.66 0.46 1.23 16 9 N -0.92 -55.35 13.29 21.45 0.28 -55.06 16 10 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 C 0.59 27.19 7.58 86.46 0.66 27.84 16 15 O -0.56 -29.37 14.32 -4.30 -0.06 -29.43 16 16 C -0.13 -4.88 6.78 24.04 0.16 -4.72 16 17 O -0.18 -5.42 6.78 -7.19 -0.05 -5.47 16 18 C 0.22 5.38 8.32 88.29 0.73 6.11 16 19 C -0.06 -0.65 10.51 71.24 0.75 0.10 16 20 N -0.51 -15.34 11.26 -291.05 -3.28 -18.62 16 21 C 0.07 2.41 7.16 41.83 0.30 2.71 16 22 C -0.08 -2.44 9.94 71.24 0.71 -1.73 16 23 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 24 H 0.10 2.47 7.84 -2.91 -0.02 2.45 16 25 H 0.10 2.98 7.93 -2.91 -0.02 2.96 16 26 H 0.09 3.11 7.68 -2.39 -0.02 3.09 16 27 H 0.10 3.09 5.36 -2.39 -0.01 3.07 16 28 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 29 H 0.01 0.47 7.36 -2.39 -0.02 0.45 16 30 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.08 2.77 6.36 -2.39 -0.02 2.76 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -73.60 313.56 4.07 -69.53 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.08 Total: 9.08 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.12 Total: 12.07 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -5.04 Total: -102.50 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.11 Total: -34.89 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.60 4.07 -69.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293931756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.614 kcal (2) G-P(sol) polarization free energy of solvation -73.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds