Wall clock time and date at job start Mon Mar 30 2020 01:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 5 5 C 1.46898 * 110.99673 * 84.99841 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00046 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99809 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99912 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47123 * 90.00333 * 11 9 7 13 13 H 1.48506 * 109.46940 * 210.00455 * 11 9 7 14 14 H 1.48493 * 109.47121 * 329.99876 * 11 9 7 15 15 C 1.50708 * 109.47150 * 119.99765 * 2 1 3 16 16 C 1.38248 * 119.99672 * 79.72789 * 15 2 1 17 17 C 1.38219 * 119.99762 * 179.76490 * 16 15 2 18 18 C 1.38254 * 119.99814 * 0.50937 * 17 16 15 19 19 C 1.38214 * 119.99851 * 359.74438 * 18 17 16 20 20 N 1.48025 * 119.99910 * 179.97438 * 19 18 17 21 21 O 1.21793 * 119.99802 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99973 * 0.02562 * 20 19 18 23 23 C 1.38209 * 120.00083 * 259.99879 * 15 2 1 24 24 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 25 25 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 26 26 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 27 27 H 1.00897 * 110.99542 * 321.04983 * 4 2 1 28 28 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 29 29 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 30 30 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 31 31 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 32 32 H 0.97004 * 119.99097 * 179.97438 * 10 9 7 33 33 H 1.08002 * 120.00430 * 0.02562 * 16 15 2 34 34 H 1.08001 * 120.00491 * 180.22765 * 17 16 15 35 35 H 1.08004 * 120.00208 * 179.71948 * 18 17 16 36 36 H 1.08003 * 119.99562 * 0.02562 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6602 0.4055 -4.7514 8 1 2.3649 1.4380 -4.6356 9 6 3.0956 -0.0537 -5.9764 10 7 3.1518 0.7656 -7.0037 11 14 3.6055 -1.8395 -6.1768 12 1 2.4254 -2.6501 -6.5710 13 1 4.6495 -1.9412 -7.2282 14 1 4.1474 -2.3469 -4.8907 15 6 2.0324 -0.7104 1.2306 16 6 2.0615 -2.0921 1.2675 17 6 2.5267 -2.7436 2.3943 18 6 2.9531 -2.0136 3.4882 19 6 2.9191 -0.6323 3.4531 20 7 3.3751 0.1492 4.6246 21 8 3.3447 1.3664 4.5938 22 8 3.7808 -0.4249 5.6192 23 6 2.4587 0.0193 2.3241 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.4496 -1.4979 -1.4099 28 1 2.7589 1.0461 -2.1182 29 1 1.0871 0.6163 -2.5525 30 1 3.5905 -0.9273 -3.3690 31 1 1.9185 -1.3566 -3.8029 32 1 3.4585 0.4424 -7.8654 33 1 1.7246 -2.6624 0.4145 34 1 2.5530 -3.8229 2.4219 35 1 3.3125 -2.5227 4.3704 36 1 2.4314 1.0987 2.2969 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180452740.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:40 Heat of formation + Delta-G solvation = 11.840087 kcal Electronic energy + Delta-G solvation = -18986.783509 eV Core-core repulsion = 15859.790300 eV Total energy + Delta-G solvation = -3126.993209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.30766 -39.98439 -37.01340 -36.68117 -33.67748 -32.15345 -32.04872 -30.16407 -28.33865 -26.72274 -24.69754 -23.40111 -22.88754 -21.10991 -20.57285 -18.86526 -18.69936 -17.65699 -16.94830 -16.78773 -15.82015 -15.51401 -14.81361 -14.52855 -14.17819 -13.99156 -13.64843 -13.05110 -12.76886 -12.62329 -12.51733 -12.33682 -11.86263 -11.70809 -11.51852 -11.27734 -11.26995 -11.20467 -11.10604 -10.23047 -10.01913 -9.89803 -9.77784 -9.38414 -9.30759 -8.61371 -8.21270 -6.11657 -4.10883 -0.30681 0.70872 1.21544 1.25916 3.06434 3.25161 3.33690 3.37722 3.98173 4.21943 4.38853 4.43338 4.55108 4.67111 4.73673 4.82551 5.05451 5.12485 5.22589 5.27040 5.43954 5.57697 5.60488 5.76725 5.87191 5.93431 6.03301 6.08851 6.15650 6.32262 6.62331 6.94504 7.22522 7.40393 7.50126 7.55368 7.74935 8.44309 8.91897 9.50141 11.01583 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.003559 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.489468 B = 7866.271942 C = 8048.020118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.117 3.883 3 H 0.093 0.907 4 N -0.687 5.687 5 C 0.073 3.927 6 C -0.009 4.009 7 C -0.524 4.524 8 H 0.071 0.929 9 C 0.068 3.932 10 N -0.902 5.902 11 Si 0.882 3.118 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.264 1.264 15 C -0.055 4.055 16 C -0.046 4.046 17 C -0.118 4.118 18 C -0.064 4.064 19 C -0.045 4.045 20 N 0.031 4.969 21 O -0.162 6.162 22 O -0.167 6.167 23 C -0.054 4.054 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.337 0.663 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.025 0.975 31 H 0.009 0.991 32 H 0.264 0.736 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 -7.103 19.718 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.006 3.994 3 H 0.112 0.888 4 N -0.317 5.317 5 C -0.054 4.054 6 C -0.047 4.047 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.134 4.134 10 N -0.541 5.541 11 Si 0.709 3.291 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.188 1.188 15 C -0.057 4.057 16 C -0.064 4.064 17 C -0.136 4.136 18 C -0.084 4.084 19 C -0.128 4.128 20 N 0.549 4.451 21 O -0.378 6.378 22 O -0.382 6.382 23 C -0.073 4.073 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.032 -7.370 19.112 20.877 hybrid contribution -0.486 -0.576 -0.188 0.777 sum -4.519 -7.946 18.925 21.017 Atomic orbital electron populations 1.22500 0.95724 1.02543 1.02955 1.20493 0.92968 0.97838 0.88054 0.88842 1.60718 1.56256 1.10473 1.04280 1.22029 0.99171 0.94998 0.89217 1.19542 0.96555 0.96045 0.92554 1.21039 1.44627 0.97765 0.92813 0.91071 1.25012 0.94927 0.97662 0.95791 1.69916 1.47501 1.35394 1.01249 0.86747 0.78644 0.85529 0.78191 1.20380 1.21362 1.18838 1.19968 0.97473 0.93755 0.94498 1.21492 0.93302 0.94187 0.97450 1.21221 0.99271 1.00916 0.92232 1.21021 0.96291 0.90738 1.00310 1.21050 1.11449 0.92061 0.88237 1.43663 0.98010 1.01357 1.02050 1.94544 1.58986 0.95680 1.88614 1.94519 1.48280 1.72759 1.22633 1.20907 0.94223 1.02053 0.90143 0.92062 0.91224 0.92208 0.84481 0.91453 0.95474 0.95658 0.97282 0.92641 0.83930 0.83644 0.83271 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.14 37.16 0.34 -1.39 16 2 C 0.12 1.32 2.79 -68.86 -0.19 1.13 16 3 H 0.09 1.09 7.66 -51.93 -0.40 0.70 16 4 N -0.69 -9.63 5.71 -107.94 -0.62 -10.25 16 5 C 0.07 1.33 5.42 -3.82 -0.02 1.31 16 6 C -0.01 -0.21 4.30 -27.88 -0.12 -0.33 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.80 16 8 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 9 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 11 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 15 C -0.06 -0.57 4.95 -104.62 -0.52 -1.09 16 16 C -0.05 -0.41 9.32 -39.58 -0.37 -0.78 16 17 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 18 C -0.06 -0.59 9.56 -39.58 -0.38 -0.96 16 19 C -0.05 -0.51 6.85 -79.95 -0.55 -1.06 16 20 N 0.03 0.41 4.45 33.96 0.15 0.56 16 21 O -0.16 -2.30 18.45 -29.46 -0.54 -2.84 16 22 O -0.17 -2.27 18.45 -29.46 -0.54 -2.82 16 23 C -0.05 -0.58 9.18 -39.59 -0.36 -0.94 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.74 7.45 -51.93 -0.39 0.35 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.34 4.27 7.82 -39.29 -0.31 3.96 16 28 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 29 H 0.03 0.48 7.44 -51.93 -0.39 0.10 16 30 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 31 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.14 1.11 7.26 -52.49 -0.38 0.72 16 34 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.15 1.13 7.61 -52.48 -0.40 0.73 16 36 H 0.15 1.52 7.59 -52.48 -0.40 1.12 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -31.14 312.22 -8.44 -39.57 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.70 Total: -0.48 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.00 Total: -18.39 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.31 Total: -36.27 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -1.09 Total: -5.66 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.14 -8.44 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180452740.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.415 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds