Wall clock time and date at job start Mon Mar 30 2020 01:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 5 5 C 1.46898 * 110.99673 * 84.99841 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00046 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99809 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99912 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47123 * 90.00333 * 11 9 7 13 13 H 1.48506 * 109.46940 * 210.00455 * 11 9 7 14 14 H 1.48493 * 109.47121 * 329.99876 * 11 9 7 15 15 C 1.50708 * 109.47150 * 119.99765 * 2 1 3 16 16 C 1.38248 * 119.99672 * 79.72789 * 15 2 1 17 17 C 1.38219 * 119.99762 * 179.76490 * 16 15 2 18 18 C 1.38254 * 119.99814 * 0.50937 * 17 16 15 19 19 C 1.38214 * 119.99851 * 359.74438 * 18 17 16 20 20 N 1.48025 * 119.99910 * 179.97438 * 19 18 17 21 21 O 1.21793 * 119.99802 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99973 * 0.02562 * 20 19 18 23 23 C 1.38209 * 120.00083 * 259.99879 * 15 2 1 24 24 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 25 25 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 26 26 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 27 27 H 1.00897 * 110.99542 * 321.04983 * 4 2 1 28 28 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 29 29 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 30 30 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 31 31 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 32 32 H 0.97004 * 119.99097 * 179.97438 * 10 9 7 33 33 H 1.08002 * 120.00430 * 0.02562 * 16 15 2 34 34 H 1.08001 * 120.00491 * 180.22765 * 17 16 15 35 35 H 1.08004 * 120.00208 * 179.71948 * 18 17 16 36 36 H 1.08003 * 119.99562 * 0.02562 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6602 0.4055 -4.7514 8 1 2.3649 1.4380 -4.6356 9 6 3.0956 -0.0537 -5.9764 10 7 3.1518 0.7656 -7.0037 11 14 3.6055 -1.8395 -6.1768 12 1 2.4254 -2.6501 -6.5710 13 1 4.6495 -1.9412 -7.2282 14 1 4.1474 -2.3469 -4.8907 15 6 2.0324 -0.7104 1.2306 16 6 2.0615 -2.0921 1.2675 17 6 2.5267 -2.7436 2.3943 18 6 2.9531 -2.0136 3.4882 19 6 2.9191 -0.6323 3.4531 20 7 3.3751 0.1492 4.6246 21 8 3.3447 1.3664 4.5938 22 8 3.7808 -0.4249 5.6192 23 6 2.4587 0.0193 2.3241 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.4496 -1.4979 -1.4099 28 1 2.7589 1.0461 -2.1182 29 1 1.0871 0.6163 -2.5525 30 1 3.5905 -0.9273 -3.3690 31 1 1.9185 -1.3566 -3.8029 32 1 3.4585 0.4424 -7.8654 33 1 1.7246 -2.6624 0.4145 34 1 2.5530 -3.8229 2.4219 35 1 3.3125 -2.5227 4.3704 36 1 2.4314 1.0987 2.2969 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180452740.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:40 Heat of formation + Delta-G solvation = -6.973646 kcal Electronic energy + Delta-G solvation = -18987.599333 eV Core-core repulsion = 15859.790300 eV Total energy + Delta-G solvation = -3127.809034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.26863 -40.78659 -38.09683 -37.69799 -35.39715 -33.68423 -32.83492 -31.40306 -29.57071 -27.63756 -26.12968 -24.53894 -23.69532 -22.27602 -22.01015 -19.81463 -19.65753 -18.94585 -18.63083 -17.56947 -16.75730 -16.63566 -16.20126 -15.83151 -15.23041 -15.03528 -14.69579 -14.53156 -14.20956 -13.71291 -13.48276 -13.17418 -13.14918 -12.88291 -12.75936 -12.64650 -12.33536 -12.28866 -12.06379 -11.94695 -11.76379 -11.61062 -11.42285 -10.76522 -10.51463 -10.16152 -9.38020 -8.29463 -6.34440 -1.22089 -0.00540 0.33689 0.37649 1.37310 1.40828 1.52803 2.32891 2.37346 3.05811 3.06643 3.49678 3.51703 3.84130 3.93395 3.99816 4.01906 4.22709 4.33302 4.45456 4.54541 4.58782 4.71950 4.83419 4.87468 4.96298 5.04794 5.12714 5.15417 5.24678 5.35329 5.50033 5.55302 5.65071 6.05158 6.24965 6.46244 6.50743 6.75144 7.30770 8.87300 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.003559 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.489468 B = 7866.271942 C = 8048.020118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 H 0.082 0.918 4 N -0.684 5.684 5 C 0.088 3.912 6 C -0.004 4.004 7 C -0.535 4.535 8 H 0.030 0.970 9 C 0.002 3.998 10 N -0.953 5.953 11 Si 0.956 3.044 12 H -0.264 1.264 13 H -0.289 1.289 14 H -0.244 1.244 15 C -0.063 4.063 16 C -0.042 4.042 17 C -0.104 4.104 18 C -0.061 4.061 19 C -0.063 4.063 20 N 0.032 4.968 21 O -0.199 6.199 22 O -0.168 6.168 23 C -0.062 4.062 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.349 0.651 28 H 0.052 0.948 29 H 0.025 0.975 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.266 0.734 33 H 0.161 0.839 34 H 0.184 0.816 35 H 0.166 0.834 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -10.585 20.777 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 H 0.100 0.900 4 N -0.315 5.315 5 C -0.041 4.041 6 C -0.042 4.042 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.194 4.194 10 N -0.594 5.594 11 Si 0.779 3.221 12 H -0.189 1.189 13 H -0.215 1.215 14 H -0.168 1.168 15 C -0.064 4.064 16 C -0.061 4.061 17 C -0.122 4.122 18 C -0.080 4.080 19 C -0.146 4.146 20 N 0.546 4.454 21 O -0.408 6.408 22 O -0.386 6.386 23 C -0.082 4.082 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.169 0.831 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.178 0.822 34 H 0.201 0.799 35 H 0.184 0.816 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.395 -10.799 20.200 23.323 hybrid contribution -0.412 0.514 -0.500 0.827 sum -4.807 -10.285 19.700 22.737 Atomic orbital electron populations 1.22435 0.94280 1.03578 1.02861 1.20446 0.94102 0.97237 0.87264 0.89986 1.60552 1.57347 1.10162 1.03439 1.21634 0.98427 0.94726 0.89270 1.19428 0.96872 0.95576 0.92297 1.21441 1.43831 0.97069 0.94989 0.95153 1.26052 0.95020 1.03025 0.95343 1.70083 1.49200 1.38056 1.02035 0.85576 0.78592 0.79135 0.78809 1.18867 1.21465 1.16768 1.19826 0.98407 0.94529 0.93680 1.21793 0.92349 0.93478 0.98454 1.21617 0.97268 1.02573 0.90753 1.21374 0.95414 0.89705 1.01466 1.21231 1.12993 0.92824 0.87547 1.43986 0.97580 1.01333 1.02528 1.94539 1.60591 0.96527 1.89113 1.94484 1.48109 1.72576 1.23390 1.20916 0.94656 1.02127 0.90464 0.91021 0.92463 0.90586 0.83131 0.92934 0.95687 0.95951 0.95804 0.92518 0.82154 0.79914 0.81637 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.14 71.98 0.66 -2.33 16 2 C 0.12 2.50 2.79 44.17 0.12 2.62 16 3 H 0.08 1.90 7.66 -2.39 -0.02 1.88 16 4 N -0.68 -17.64 5.71 -495.42 -2.83 -20.47 16 5 C 0.09 3.12 5.42 86.31 0.47 3.59 16 6 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 7 C -0.53 -30.01 9.66 25.60 0.25 -29.76 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 9 C 0.00 0.13 5.47 84.65 0.46 0.59 16 10 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 11 Si 0.96 42.94 27.47 68.60 1.88 44.82 16 12 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 13 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 15 C -0.06 -1.16 4.95 -19.87 -0.10 -1.26 16 16 C -0.04 -0.59 9.32 22.27 0.21 -0.38 16 17 C -0.10 -1.14 10.05 22.27 0.22 -0.91 16 18 C -0.06 -0.91 9.56 22.27 0.21 -0.70 16 19 C -0.06 -1.33 6.85 36.37 0.25 -1.09 16 20 N 0.03 0.84 4.45 -46.46 -0.21 0.63 16 21 O -0.20 -5.83 18.45 18.90 0.35 -5.48 16 22 O -0.17 -4.47 18.45 18.89 0.35 -4.13 16 23 C -0.06 -1.28 9.18 22.27 0.20 -1.07 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.14 7.45 -2.39 -0.02 1.13 16 26 H 0.08 1.07 8.13 -2.39 -0.02 1.05 16 27 H 0.35 7.63 7.82 -89.70 -0.70 6.93 16 28 H 0.05 2.00 8.06 -2.39 -0.02 1.98 16 29 H 0.02 0.89 7.44 -2.39 -0.02 0.87 16 30 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 31 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 32 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.16 1.69 7.26 -2.91 -0.02 1.67 16 34 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.17 1.94 7.61 -2.91 -0.02 1.92 16 36 H 0.15 3.03 7.59 -2.91 -0.02 3.00 16 Total: -1.00 -69.12 312.22 3.26 -65.86 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.33 Total: 8.41 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 3.09 Total: -30.75 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -2.74 Total: -78.74 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.70 Total: -9.61 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.82 kcal Total: -69.12 3.26 -65.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180452740.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.885 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds