Wall clock time and date at job start Sun Mar 29 2020 23:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99582 * 2 1 4 4 C 1.50702 * 109.46680 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.03939 * 0.25524 * 4 3 2 6 6 C 1.38267 * 120.07286 * 180.28231 * 5 4 3 7 7 C 1.38305 * 120.14868 * 359.73553 * 6 5 4 8 8 C 1.38080 * 120.07989 * 359.97438 * 7 6 5 9 9 C 1.38887 * 120.03667 * 180.02562 * 4 3 2 10 10 N 1.39679 * 120.07586 * 359.97438 * 9 4 3 11 11 C 1.46499 * 120.00084 * 179.72804 * 10 9 4 12 12 C 1.50701 * 109.46992 * 179.97438 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47268 * 89.99721 * 19 17 15 21 21 H 1.48498 * 109.47211 * 209.99980 * 19 17 15 22 22 H 1.48505 * 109.46734 * 329.99774 * 19 17 15 23 23 H 1.08997 * 109.47051 * 299.99689 * 1 2 3 24 24 H 1.09004 * 109.47167 * 60.00079 * 1 2 3 25 25 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47357 * 60.00208 * 3 2 1 27 27 H 1.08993 * 109.47102 * 299.99706 * 3 2 1 28 28 H 1.08002 * 119.96406 * 0.02562 * 5 4 3 29 29 H 1.07997 * 119.92253 * 179.76632 * 6 5 4 30 30 H 1.08005 * 119.95839 * 180.02562 * 7 6 5 31 31 H 1.07994 * 120.03894 * 180.02562 * 8 7 6 32 32 H 0.97000 * 119.99495 * 359.72173 * 10 9 4 33 33 H 1.09002 * 109.47391 * 59.99811 * 11 10 9 34 34 H 1.09001 * 109.46813 * 299.99868 * 11 10 9 35 35 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 36 36 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1074 -0.0601 -0.0064 6 6 5.4856 -0.1701 -0.0011 7 6 6.2732 0.9668 0.0045 8 6 5.6851 2.2161 0.0043 9 6 4.3005 2.3302 -0.0002 10 7 3.7022 3.5924 0.0003 11 6 4.5350 4.7977 0.0067 12 6 3.6515 6.0186 0.0053 13 8 2.4450 5.8941 -0.0002 14 7 4.2021 7.2488 0.0110 15 6 3.3984 8.3595 0.0102 16 1 2.3241 8.2486 0.0045 17 6 3.9660 9.6277 0.0155 18 7 5.2732 9.7626 0.0219 19 14 2.8710 11.1411 0.0151 20 1 2.5754 11.5386 1.4151 21 1 3.5658 12.2546 -0.6794 22 1 1.6012 10.8331 -0.6906 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.4952 -0.9499 -0.0109 29 1 5.9482 -1.1460 -0.0019 30 1 7.3495 0.8773 0.0082 31 1 6.3007 3.1034 0.0082 32 1 2.7354 3.6708 -0.0038 33 1 5.1681 4.8067 -0.8805 34 1 5.1604 4.8024 0.8995 35 1 5.1670 7.3483 0.0157 36 1 5.6694 10.6480 0.0260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049508564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:47 Heat of formation + Delta-G solvation = -58.591034 kcal Electronic energy + Delta-G solvation = -19080.435027 eV Core-core repulsion = 15950.387695 eV Total energy + Delta-G solvation = -3130.047331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68842 -38.36087 -37.51883 -35.05595 -33.98017 -31.86957 -31.39210 -29.59248 -27.46084 -26.49410 -25.41919 -24.43300 -21.55082 -21.06906 -19.40033 -18.11499 -17.50958 -16.61854 -15.91962 -15.91664 -15.34693 -15.22935 -14.80111 -14.46023 -14.37528 -13.95636 -13.60235 -13.35362 -13.32508 -12.57060 -12.49488 -12.22535 -11.84206 -11.67885 -11.62149 -11.16185 -10.94250 -10.73412 -10.48802 -10.34603 -9.97592 -9.79189 -9.65942 -8.66330 -8.56013 -8.14018 -7.14396 -6.55283 -3.97242 1.58208 1.82999 3.09032 3.19601 3.24626 3.58512 3.69907 3.72679 4.04154 4.10304 4.82573 4.94685 5.12952 5.18632 5.20814 5.23843 5.26265 5.42459 5.52223 5.53588 5.60522 5.69573 5.78762 5.87273 5.94369 6.08936 6.24104 6.50557 6.59614 6.79276 7.05967 7.16706 7.42558 7.52707 7.89478 8.04792 8.41822 9.01363 9.35322 9.83577 10.61671 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.003948 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.585271 B = 7091.340773 C = 8143.168148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.111 3.889 4 C -0.174 4.174 5 C -0.049 4.049 6 C -0.192 4.192 7 C -0.070 4.070 8 C -0.204 4.204 9 C 0.234 3.766 10 N -0.726 5.726 11 C 0.113 3.887 12 C 0.429 3.571 13 O -0.596 6.596 14 N -0.550 5.550 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.896 5.896 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.269 1.269 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.409 0.591 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.395 0.605 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 -15.718 -0.030 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.035 3.965 4 C -0.179 4.179 5 C -0.068 4.068 6 C -0.213 4.213 7 C -0.089 4.089 8 C -0.227 4.227 9 C 0.128 3.872 10 N -0.357 5.357 11 C -0.016 4.016 12 C 0.214 3.786 13 O -0.483 6.483 14 N -0.185 5.185 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.759 3.241 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.193 1.193 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.248 0.752 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.229 0.771 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.760 -15.559 -0.037 15.578 hybrid contribution -0.352 1.252 0.011 1.301 sum -1.112 -14.307 -0.026 14.350 Atomic orbital electron populations 1.22740 0.80993 1.02562 1.00267 1.87805 1.19579 1.27694 1.95507 1.21023 0.90500 0.84547 1.00427 1.19042 0.93322 0.92673 1.12827 1.20668 0.94285 0.96417 0.95412 1.20830 0.93662 0.98075 1.08712 1.20865 0.99240 0.92029 0.96789 1.20622 0.92353 0.98308 1.11383 1.17585 0.92042 0.84358 0.93242 1.44540 1.09482 1.01319 1.80333 1.20950 0.93651 0.84937 1.02036 1.19746 0.88848 0.84456 0.85522 1.90496 1.14772 1.85859 1.57138 1.41797 1.09739 1.04153 1.62790 1.19727 0.92407 0.83091 1.48247 0.87736 1.25312 0.96219 0.99365 0.96752 1.69609 1.09535 1.25015 1.49421 0.85815 0.79634 0.80087 0.78527 1.20241 1.20756 1.19317 0.93953 0.93960 0.89688 0.92417 0.92438 0.85559 0.86788 0.86479 0.85884 0.75242 0.90571 0.90564 0.77110 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.02 9.18 -35.23 -0.32 -5.34 16 3 C 0.11 1.53 5.07 36.01 0.18 1.71 16 4 C -0.17 -2.57 5.90 -104.42 -0.62 -3.18 16 5 C -0.05 -0.67 9.37 -39.61 -0.37 -1.04 16 6 C -0.19 -2.39 10.04 -39.55 -0.40 -2.79 16 7 C -0.07 -0.88 10.04 -39.61 -0.40 -1.28 16 8 C -0.20 -2.88 9.31 -39.38 -0.37 -3.24 16 9 C 0.23 3.63 6.63 -83.78 -0.56 3.07 16 10 N -0.73 -12.29 5.64 -59.80 -0.34 -12.63 16 11 C 0.11 1.96 5.39 -5.19 -0.03 1.94 16 12 C 0.43 9.75 7.85 -10.98 -0.09 9.67 16 13 O -0.60 -15.46 15.24 5.55 0.08 -15.37 16 14 N -0.55 -13.43 5.29 -10.96 -0.06 -13.49 16 15 C -0.31 -8.25 9.68 -14.94 -0.14 -8.40 16 16 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 18 N -0.90 -23.60 13.05 55.50 0.72 -22.87 16 19 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 27 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 28 H 0.13 1.60 7.00 -52.49 -0.37 1.23 16 29 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.12 1.60 6.73 -52.49 -0.35 1.25 16 32 H 0.41 7.32 6.13 -40.82 -0.25 7.07 16 33 H 0.08 1.21 7.95 -51.93 -0.41 0.79 16 34 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 35 H 0.40 9.16 7.90 -40.82 -0.32 8.83 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -29.85 310.86 -6.59 -36.45 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -4.58 Total: 14.73 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.76 Total: -1.54 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.33 Total: -48.99 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.24 Total: -20.71 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.85 -6.59 -36.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049508564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.145 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds