Wall clock time and date at job start Sun Mar 29 2020 23:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99582 * 2 1 4 4 C 1.50702 * 109.46680 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.03939 * 0.25524 * 4 3 2 6 6 C 1.38267 * 120.07286 * 180.28231 * 5 4 3 7 7 C 1.38305 * 120.14868 * 359.73553 * 6 5 4 8 8 C 1.38080 * 120.07989 * 359.97438 * 7 6 5 9 9 C 1.38887 * 120.03667 * 180.02562 * 4 3 2 10 10 N 1.39679 * 120.07586 * 359.97438 * 9 4 3 11 11 C 1.46499 * 120.00084 * 179.72804 * 10 9 4 12 12 C 1.50701 * 109.46992 * 179.97438 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47268 * 89.99721 * 19 17 15 21 21 H 1.48498 * 109.47211 * 209.99980 * 19 17 15 22 22 H 1.48505 * 109.46734 * 329.99774 * 19 17 15 23 23 H 1.08997 * 109.47051 * 299.99689 * 1 2 3 24 24 H 1.09004 * 109.47167 * 60.00079 * 1 2 3 25 25 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47357 * 60.00208 * 3 2 1 27 27 H 1.08993 * 109.47102 * 299.99706 * 3 2 1 28 28 H 1.08002 * 119.96406 * 0.02562 * 5 4 3 29 29 H 1.07997 * 119.92253 * 179.76632 * 6 5 4 30 30 H 1.08005 * 119.95839 * 180.02562 * 7 6 5 31 31 H 1.07994 * 120.03894 * 180.02562 * 8 7 6 32 32 H 0.97000 * 119.99495 * 359.72173 * 10 9 4 33 33 H 1.09002 * 109.47391 * 59.99811 * 11 10 9 34 34 H 1.09001 * 109.46813 * 299.99868 * 11 10 9 35 35 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 36 36 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1074 -0.0601 -0.0064 6 6 5.4856 -0.1701 -0.0011 7 6 6.2732 0.9668 0.0045 8 6 5.6851 2.2161 0.0043 9 6 4.3005 2.3302 -0.0002 10 7 3.7022 3.5924 0.0003 11 6 4.5350 4.7977 0.0067 12 6 3.6515 6.0186 0.0053 13 8 2.4450 5.8941 -0.0002 14 7 4.2021 7.2488 0.0110 15 6 3.3984 8.3595 0.0102 16 1 2.3241 8.2486 0.0045 17 6 3.9660 9.6277 0.0155 18 7 5.2732 9.7626 0.0219 19 14 2.8710 11.1411 0.0151 20 1 2.5754 11.5386 1.4151 21 1 3.5658 12.2546 -0.6794 22 1 1.6012 10.8331 -0.6906 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.4952 -0.9499 -0.0109 29 1 5.9482 -1.1460 -0.0019 30 1 7.3495 0.8773 0.0082 31 1 6.3007 3.1034 0.0082 32 1 2.7354 3.6708 -0.0038 33 1 5.1681 4.8067 -0.8805 34 1 5.1604 4.8024 0.8995 35 1 5.1670 7.3483 0.0157 36 1 5.6694 10.6480 0.0260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049508564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:47 Heat of formation + Delta-G solvation = -78.683320 kcal Electronic energy + Delta-G solvation = -19081.306294 eV Core-core repulsion = 15950.387695 eV Total energy + Delta-G solvation = -3130.918598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88453 -40.04479 -38.52225 -36.48413 -35.76973 -33.41415 -32.85278 -30.81960 -28.60161 -27.78053 -26.40479 -26.15693 -22.75416 -22.13620 -21.11067 -20.02429 -18.81451 -17.67211 -17.35801 -16.90968 -16.78552 -16.53364 -16.33733 -16.13612 -15.58770 -15.28867 -14.82053 -14.60828 -14.59851 -13.88729 -13.79647 -13.54814 -13.47456 -13.03121 -12.88110 -12.52087 -12.47637 -12.14608 -11.92691 -11.75531 -11.59415 -11.06500 -10.80293 -10.55951 -10.11019 -9.60218 -8.52974 -8.31167 -6.02857 0.54093 0.76548 1.34806 1.41244 1.53384 1.90510 2.19135 2.40992 2.75018 2.99383 3.14508 3.15971 3.92599 4.14838 4.17462 4.24266 4.34366 4.35926 4.41201 4.47979 4.55269 4.55367 4.62663 4.75733 4.83746 4.92120 5.22258 5.35935 5.44209 5.60109 5.77908 5.87082 6.03834 6.19161 6.36973 6.49699 6.73534 7.02925 7.43373 7.95389 8.63844 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.003948 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.585271 B = 7091.340773 C = 8143.168148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.115 3.885 4 C -0.188 4.188 5 C -0.058 4.058 6 C -0.187 4.187 7 C -0.070 4.070 8 C -0.212 4.212 9 C 0.212 3.788 10 N -0.737 5.737 11 C 0.129 3.871 12 C 0.429 3.571 13 O -0.631 6.631 14 N -0.559 5.559 15 C -0.339 4.339 16 H 0.081 0.919 17 C -0.007 4.007 18 N -0.914 5.914 19 Si 0.994 3.006 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.272 1.272 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.107 0.893 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.133 0.867 32 H 0.401 0.599 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.400 0.600 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -16.626 -0.013 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C 0.039 3.961 4 C -0.193 4.193 5 C -0.077 4.077 6 C -0.207 4.207 7 C -0.089 4.089 8 C -0.234 4.234 9 C 0.108 3.892 10 N -0.368 5.368 11 C 0.000 4.000 12 C 0.216 3.784 13 O -0.520 6.520 14 N -0.194 5.194 15 C -0.469 4.469 16 H 0.099 0.901 17 C -0.208 4.208 18 N -0.554 5.554 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.194 1.194 22 H -0.197 1.197 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.126 0.874 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.150 0.850 32 H 0.238 0.762 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.235 0.765 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.320 -16.501 -0.018 16.504 hybrid contribution -0.675 1.388 0.006 1.543 sum -0.355 -15.113 -0.012 15.118 Atomic orbital electron populations 1.22964 0.79420 1.04203 1.00648 1.87777 1.21326 1.27097 1.95548 1.20905 0.90479 0.84917 0.99801 1.19256 0.93774 0.93115 1.13128 1.20861 0.95183 0.96106 0.95525 1.21206 0.93174 0.99475 1.06796 1.21229 1.00855 0.91253 0.95536 1.20883 0.91818 0.99596 1.11151 1.17786 0.92861 0.83765 0.94768 1.44488 1.08935 1.01664 1.81744 1.20829 0.92648 0.82599 1.03876 1.20653 0.89023 0.85425 0.83293 1.90470 1.16792 1.86625 1.58068 1.41825 1.09758 1.04309 1.63538 1.19693 0.91874 0.84746 1.50562 0.90054 1.26063 0.97572 1.01444 0.95752 1.69663 1.10503 1.25987 1.49252 0.84911 0.77798 0.76817 0.78727 1.19559 1.19431 1.19724 0.93587 0.93594 0.87436 0.93075 0.93091 0.84932 0.84053 0.83511 0.84965 0.76203 0.88569 0.88559 0.76530 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -10.15 9.18 -148.98 -1.37 -11.52 16 3 C 0.12 3.22 5.07 71.24 0.36 3.58 16 4 C -0.19 -5.47 5.90 -19.73 -0.12 -5.59 16 5 C -0.06 -1.49 9.37 22.25 0.21 -1.28 16 6 C -0.19 -4.10 10.04 22.29 0.22 -3.88 16 7 C -0.07 -1.54 10.04 22.25 0.22 -1.32 16 8 C -0.21 -5.56 9.31 22.40 0.21 -5.35 16 9 C 0.21 6.43 6.63 38.21 0.25 6.68 16 10 N -0.74 -24.94 5.64 -343.12 -1.93 -26.87 16 11 C 0.13 4.40 5.39 85.63 0.46 4.86 16 12 C 0.43 19.79 7.85 87.66 0.69 20.48 16 13 O -0.63 -33.70 15.24 -3.07 -0.05 -33.74 16 14 N -0.56 -27.70 5.29 -306.98 -1.62 -29.32 16 15 C -0.34 -18.73 9.68 84.04 0.81 -17.91 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.38 5.50 84.92 0.47 0.08 16 18 N -0.91 -47.79 13.05 21.66 0.28 -47.51 16 19 Si 0.99 41.65 29.55 68.60 2.03 43.68 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.11 1.49 8.14 -2.38 -0.02 1.48 16 26 H 0.05 1.46 8.06 -2.39 -0.02 1.44 16 27 H 0.05 1.45 8.05 -2.39 -0.02 1.43 16 28 H 0.13 3.17 7.00 -2.91 -0.02 3.15 16 29 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.13 3.14 6.73 -2.91 -0.02 3.12 16 32 H 0.40 14.77 6.13 -92.71 -0.57 14.20 16 33 H 0.10 2.92 7.95 -2.39 -0.02 2.90 16 34 H 0.10 2.92 7.95 -2.39 -0.02 2.90 16 35 H 0.40 18.67 7.90 -92.71 -0.73 17.93 16 36 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -64.09 310.86 2.19 -61.91 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: -0.19 Total: 41.34 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.04 Total: 2.04 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -3.27 Total: -103.71 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.42 Total: -45.26 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -64.09 2.19 -61.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049508564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.777 kcal (2) G-P(sol) polarization free energy of solvation -64.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds