Wall clock time and date at job start Mon Mar 30 2020 00:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.46878 * 2 1 4 4 N 1.30283 * 126.28121 * 90.02619 * 3 2 1 5 5 N 1.28666 * 109.38001 * 179.97438 * 4 3 2 6 6 C 1.30282 * 109.38108 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.27988 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47259 * 90.02476 * 7 6 5 9 9 C 1.46898 * 110.99825 * 190.00025 * 8 7 6 10 10 C 1.50704 * 109.46914 * 168.99047 * 9 8 7 11 11 H 1.07994 * 119.99559 * 354.95772 * 10 9 8 12 12 C 1.37872 * 119.99808 * 174.95503 * 10 9 8 13 13 N 1.31517 * 120.00315 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99884 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47338 * 60.00216 * 14 12 10 16 16 H 1.48501 * 109.46998 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47070 * 299.99865 * 14 12 10 18 18 C 1.46892 * 110.99924 * 66.04160 * 8 7 6 19 19 C 1.53007 * 109.47240 * 62.04062 * 18 8 7 20 20 C 1.47197 * 109.47137 * 179.59764 * 19 18 8 21 21 N 6.48216 * 119.82949 * 284.48390 * 2 1 3 22 22 O 1.34360 * 107.43332 * 359.75856 * 6 5 4 23 23 H 1.08995 * 109.46810 * 299.99882 * 1 2 3 24 24 H 1.09004 * 109.46887 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46740 * 60.00076 * 1 2 3 26 26 H 1.09005 * 109.46913 * 119.99983 * 2 1 3 27 27 H 1.08994 * 109.47171 * 239.99714 * 2 1 3 28 28 H 1.09002 * 109.46757 * 210.02230 * 7 6 5 29 29 H 1.09003 * 109.47430 * 330.02174 * 7 6 5 30 30 H 1.09005 * 109.46774 * 288.98474 * 9 8 7 31 31 H 1.08991 * 109.47442 * 48.98632 * 9 8 7 32 32 H 0.96993 * 120.00006 * 179.97438 * 13 12 10 33 33 H 1.08997 * 109.47406 * 182.03903 * 18 8 7 34 34 H 1.09000 * 109.47643 * 302.04336 * 18 8 7 35 35 H 1.09003 * 109.46966 * 299.59386 * 19 18 8 36 36 H 1.08997 * 109.47141 * 59.59172 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2897 2.1475 1.0502 5 7 2.7004 3.3081 0.6762 6 6 2.7195 3.3611 -0.6254 7 6 3.1378 4.5415 -1.4637 8 7 4.5792 4.4622 -1.7364 9 6 5.0691 5.7065 -2.3444 10 6 6.5760 5.6979 -2.3612 11 1 7.1167 4.8918 -1.8879 12 6 7.2643 6.7193 -2.9810 13 7 6.6058 7.7012 -3.5570 14 14 9.1321 6.7084 -3.0024 15 1 9.6121 5.4832 -3.6906 16 1 9.6258 7.9081 -3.7250 17 1 9.6433 6.7256 -1.6082 18 6 4.8918 3.3035 -2.5834 19 6 4.1874 3.4538 -3.9334 20 6 4.5085 2.2974 -4.7857 21 7 4.7544 1.4064 -5.4446 22 8 2.3034 2.1684 -1.0830 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.5889 4.5311 -2.4054 29 1 2.9199 5.4644 -0.9263 30 1 4.6948 5.7838 -3.3653 31 1 4.7170 6.5583 -1.7628 32 1 7.0900 8.4199 -3.9927 33 1 5.9690 3.2479 -2.7399 34 1 4.5482 2.3923 -2.0939 35 1 3.1097 3.5022 -3.7775 36 1 4.5256 4.3687 -4.4198 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104066708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:46 Heat of formation + Delta-G solvation = 64.598801 kcal Electronic energy + Delta-G solvation = -19656.889631 eV Core-core repulsion = 16564.476963 eV Total energy + Delta-G solvation = -3092.412668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.06346 -38.13246 -36.10903 -35.98118 -34.58672 -32.82788 -31.38164 -30.05716 -27.80960 -25.87453 -24.64560 -23.96459 -22.29688 -21.82830 -20.16378 -17.69919 -17.32078 -16.87465 -16.41102 -15.59051 -15.17947 -15.09837 -14.61582 -14.46892 -14.10062 -13.77423 -13.49728 -13.02820 -12.45985 -12.35744 -12.25034 -12.15624 -12.15236 -11.77095 -11.68102 -11.60576 -11.49657 -11.25870 -10.89707 -10.77597 -10.69630 -10.41418 -10.09851 -9.51855 -9.33330 -8.57240 -7.69613 -6.17302 -4.19472 1.27690 2.34690 2.55765 2.99252 3.02963 3.28192 3.32836 3.36146 3.85812 4.17442 4.32925 4.44197 4.69711 4.74134 4.77733 5.01939 5.14402 5.19468 5.27127 5.36764 5.42313 5.44229 5.60481 5.65202 5.69983 5.72448 5.83182 5.86276 6.05527 6.41088 6.89520 7.00204 7.53870 7.67017 7.81451 7.89743 8.23858 8.49322 8.87271 9.46207 10.92874 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.022222 B = 0.005051 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.699822 B = 5541.880322 C = 6268.555404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C 0.150 3.850 4 N -0.289 5.289 5 N -0.277 5.277 6 C 0.187 3.813 7 C 0.138 3.862 8 N -0.520 5.520 9 C 0.188 3.812 10 C -0.514 4.514 11 H 0.065 0.935 12 C 0.061 3.939 13 N -0.896 5.896 14 Si 0.897 3.103 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.068 3.932 19 C -0.074 4.074 20 C 0.225 3.775 21 N -0.457 5.457 22 O -0.227 6.227 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.012 0.988 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 -10.352 3.138 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 C -0.062 4.062 4 N -0.136 5.136 5 N -0.123 5.123 6 C -0.025 4.025 7 C 0.008 3.992 8 N -0.244 5.244 9 C 0.065 3.935 10 C -0.552 4.552 11 H 0.083 0.917 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.062 4.062 19 C -0.115 4.115 20 C -0.093 4.093 21 N -0.134 5.134 22 O -0.106 6.106 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.962 -11.175 3.750 16.097 hybrid contribution 0.458 0.260 -1.756 1.833 sum -10.504 -10.914 1.994 15.279 Atomic orbital electron populations 1.21793 0.92878 1.03101 1.03077 1.20094 0.96958 0.83771 1.05534 1.27908 1.00270 0.97946 0.80060 1.74380 1.14675 0.98746 1.25768 1.74417 1.16043 1.12391 1.09443 1.28224 0.96246 0.86261 0.91748 1.20714 0.92134 0.89907 0.96419 1.62444 1.08696 1.06615 1.46653 1.19947 0.96276 0.84085 0.93236 1.21021 0.90363 1.08439 1.35395 0.91662 1.24925 0.98746 0.95315 0.95124 1.69912 1.35838 1.11227 1.36460 0.86566 0.85166 0.77411 0.78382 1.20235 1.21303 1.20030 1.22119 1.02480 0.93688 0.87897 1.20202 1.02779 0.92578 0.95968 1.29102 0.92745 0.94128 0.93320 1.81108 1.09575 1.12032 1.10720 1.84792 1.63926 1.23579 1.38336 0.91619 0.90714 0.92082 0.87317 0.88686 0.91617 0.86006 0.97079 0.94420 0.92628 0.88141 0.92348 0.88364 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.90 37.16 0.37 -0.66 16 2 C -0.02 -0.21 6.56 -27.88 -0.18 -0.39 16 3 C 0.15 1.98 7.73 -12.94 -0.10 1.88 16 4 N -0.29 -4.70 12.22 32.55 0.40 -4.30 16 5 N -0.28 -4.89 12.22 32.55 0.40 -4.49 16 6 C 0.19 2.92 7.05 -12.94 -0.09 2.83 16 7 C 0.14 2.03 5.38 -4.97 -0.03 2.01 16 8 N -0.52 -9.34 4.69 -237.52 -1.11 -10.45 16 9 C 0.19 4.04 4.53 -4.98 -0.02 4.02 16 10 C -0.51 -12.79 8.40 -34.44 -0.29 -13.08 16 11 H 0.07 1.65 7.37 -52.49 -0.39 1.26 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -24.13 13.29 55.43 0.74 -23.40 16 14 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 18 C 0.07 1.11 4.94 -3.82 -0.02 1.09 16 19 C -0.07 -1.03 5.05 -29.52 -0.15 -1.18 16 20 C 0.22 3.51 15.43 -20.79 -0.32 3.19 16 21 N -0.46 -8.07 18.53 42.12 0.78 -7.29 16 22 O -0.23 -3.24 10.21 5.40 0.06 -3.18 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.80 6.07 -51.93 -0.32 0.48 16 29 H 0.12 1.74 7.92 -51.93 -0.41 1.33 16 30 H 0.01 0.25 6.01 -51.93 -0.31 -0.07 16 31 H 0.04 0.87 7.91 -51.93 -0.41 0.46 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.10 1.83 6.98 -51.93 -0.36 1.46 16 34 H 0.06 0.92 6.70 -51.93 -0.35 0.57 16 35 H 0.10 1.14 6.34 -51.93 -0.33 0.81 16 36 H 0.13 1.93 6.28 -51.93 -0.33 1.61 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -30.20 313.04 -4.43 -34.63 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -4.45 Total: -2.86 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.93 Total: 1.20 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 1.20 Total: -49.92 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: 0.06 Total: -3.18 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.20 -4.43 -34.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104066708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.228 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds