Wall clock time and date at job start Mon Mar 30 2020 01:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21511 * 120.00421 * 0.02562 * 7 6 5 9 9 C 1.48143 * 119.99794 * 179.97438 * 7 6 5 10 10 C 1.40105 * 121.14634 * 179.72153 * 9 7 6 11 11 C 1.38510 * 117.82273 * 179.74192 * 10 9 7 12 12 N 1.31911 * 119.96613 * 0.54075 * 11 10 9 13 13 N 1.28279 * 122.51804 * 359.72319 * 12 11 10 14 14 C 1.31924 * 122.32449 * 359.97438 * 13 12 11 15 15 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 16 16 C 1.36933 * 120.00376 * 275.00368 * 15 2 1 17 17 H 1.07998 * 120.00056 * 0.02562 * 16 15 2 18 18 C 1.38820 * 120.00147 * 180.02562 * 16 15 2 19 19 N 1.31619 * 119.99690 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99941 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47553 * 59.99685 * 20 18 16 22 22 H 1.48501 * 109.46788 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47159 * 299.99543 * 20 18 16 24 24 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 25 25 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 27 27 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 28 28 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 30 30 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 31 31 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 32 32 H 1.08004 * 121.08823 * 359.97438 * 10 9 7 33 33 H 1.08002 * 120.01492 * 180.25917 * 11 10 9 34 34 H 1.08004 * 120.16931 * 179.97438 * 14 13 12 35 35 H 0.97003 * 119.99849 * 95.00425 * 15 2 1 36 36 H 0.97004 * 120.00058 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1600 -0.7986 -2.0223 9 6 5.8682 -2.0389 -3.9839 10 6 7.2355 -2.0855 -4.2862 11 6 7.6217 -2.7627 -5.4311 12 7 6.7117 -3.3275 -6.2011 13 7 5.4580 -3.2839 -5.9329 14 6 4.9861 -2.6699 -4.8648 15 7 2.0183 -0.6905 1.1962 16 6 2.1490 -0.0074 2.3758 17 1 1.8917 1.0404 2.4244 18 6 2.6122 -0.6616 3.5091 19 7 2.9262 -1.9384 3.4497 20 14 2.7898 0.2701 5.1183 21 1 1.4671 0.8059 5.5288 22 1 3.3001 -0.6480 6.1681 23 1 3.7443 1.3933 4.9373 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3635 0.5137 0.8900 27 1 1.6055 -0.2617 -2.1369 28 1 1.7517 -1.7714 -1.2056 29 1 3.9995 -1.0726 -0.4258 30 1 3.8532 0.4372 -1.3572 31 1 3.4261 -1.7357 -3.1104 32 1 7.9648 -1.6122 -3.6454 33 1 8.6670 -2.8243 -5.6956 34 1 3.9234 -2.6543 -4.6729 35 1 2.2490 -1.6317 1.1527 36 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690865310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:05 Heat of formation + Delta-G solvation = 28.144061 kcal Electronic energy + Delta-G solvation = -18973.942671 eV Core-core repulsion = 15879.949207 eV Total energy + Delta-G solvation = -3093.993464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.133 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47460 -39.50844 -36.71069 -34.68826 -33.55325 -32.98092 -32.21835 -29.44303 -28.23255 -25.82548 -24.88190 -23.84180 -22.64753 -21.14134 -19.91059 -18.42349 -17.94272 -17.24063 -16.68796 -15.78630 -15.66789 -15.37476 -15.16613 -14.70049 -14.01077 -13.83947 -13.75580 -13.52978 -13.08588 -12.55622 -12.10216 -11.61827 -11.37567 -11.20823 -10.97755 -10.80744 -10.74161 -10.60204 -10.55969 -10.48805 -10.32329 -10.05107 -9.83681 -9.66733 -9.08990 -8.91786 -6.98979 -5.77853 -3.06928 0.00707 0.48514 2.57753 2.87112 3.34193 3.43909 3.48643 3.49253 3.68352 3.95570 4.16536 4.32303 4.50028 4.58471 4.88590 5.14353 5.30774 5.31211 5.42507 5.50620 5.60699 5.71383 5.79827 5.98511 6.10278 6.22167 6.29923 6.34975 6.51192 6.62235 6.81132 7.01478 7.31562 7.68908 7.98326 8.25551 8.40376 9.51817 10.07712 10.42185 11.44630 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.003717 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.294567 B = 7530.471367 C = 8179.635135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.120 3.880 6 N -0.715 5.715 7 C 0.555 3.445 8 O -0.519 6.519 9 C -0.126 4.126 10 C -0.060 4.060 11 C 0.039 3.961 12 N -0.232 5.232 13 N -0.243 5.243 14 C 0.068 3.932 15 N -0.724 5.724 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.397 0.603 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.383 0.617 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -0.235 -17.721 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.173 4.173 5 C -0.002 4.002 6 N -0.367 5.367 7 C 0.338 3.662 8 O -0.395 6.395 9 C -0.141 4.141 10 C -0.090 4.090 11 C -0.125 4.125 12 N -0.074 5.074 13 N -0.084 5.084 14 C -0.096 4.096 15 N -0.366 5.366 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.232 0.768 32 H 0.182 0.818 33 H 0.198 0.802 34 H 0.192 0.808 35 H 0.217 0.783 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.138 -0.591 -18.366 18.836 hybrid contribution 0.108 0.758 2.040 2.178 sum 4.246 0.166 -16.327 16.871 Atomic orbital electron populations 1.22427 0.99042 1.00891 1.00034 1.20143 0.91958 0.95571 0.85907 0.93226 1.22085 0.93507 1.02052 0.99622 1.21592 0.94780 0.97299 0.86498 1.46036 1.06500 1.56347 1.27773 1.17881 0.83108 0.80650 0.84520 1.90844 1.55226 1.44972 1.48417 1.21374 0.95515 0.99938 0.97225 1.22690 0.95903 0.94057 0.96310 1.24419 1.02218 0.94080 0.91810 1.72894 0.96484 1.12938 1.25081 1.73074 1.07067 1.13033 1.15215 1.24565 1.01906 0.92295 0.90876 1.42450 1.78141 1.10648 1.05367 1.19174 1.36758 0.93857 0.87365 0.91238 1.24725 1.02041 0.95948 0.98056 1.69642 1.50745 1.08687 1.29015 0.86290 0.77745 0.78665 0.83620 1.21327 1.21733 1.21235 0.94537 0.93488 0.92663 0.91725 0.91407 0.89204 0.91277 0.76831 0.81785 0.80213 0.80760 0.78292 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 2 C 0.17 3.17 2.89 -67.94 -0.20 2.98 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 C -0.13 -1.87 4.87 -26.74 -0.13 -2.00 16 5 C 0.12 1.82 5.56 -4.04 -0.02 1.80 16 6 N -0.72 -8.51 5.52 -61.15 -0.34 -8.85 16 7 C 0.55 7.45 7.80 -12.20 -0.10 7.35 16 8 O -0.52 -9.13 16.49 5.36 0.09 -9.04 16 9 C -0.13 -1.34 5.92 -104.57 -0.62 -1.96 16 10 C -0.06 -0.55 9.77 -38.78 -0.38 -0.93 16 11 C 0.04 0.32 11.30 -17.42 -0.20 0.13 16 12 N -0.23 -2.58 11.48 30.53 0.35 -2.23 16 13 N -0.24 -2.78 11.49 30.78 0.35 -2.42 16 14 C 0.07 0.65 10.84 -16.96 -0.18 0.46 16 15 N -0.72 -17.16 4.57 -53.43 -0.24 -17.40 16 16 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.73 7.75 -51.93 -0.40 1.32 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.40 3.31 6.63 -40.82 -0.27 3.04 16 32 H 0.16 1.34 7.80 -52.48 -0.41 0.94 16 33 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.18 1.08 6.53 -52.48 -0.34 0.74 16 35 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -33.50 315.00 -5.73 -39.23 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.67 Total: 7.42 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.72 Total: -1.62 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.85 Total: -57.99 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.50 -5.73 -39.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690865310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.370 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds