Wall clock time and date at job start Mon Mar 30 2020 00:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48503 * 109.47094 * 264.85339 * 3 2 1 5 5 H 1.48491 * 109.47285 * 24.85652 * 3 2 1 6 6 H 1.48500 * 109.47013 * 144.85794 * 3 2 1 7 7 C 1.37872 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00114 * 4.83274 * 7 2 1 9 9 C 1.50702 * 120.00073 * 184.83705 * 7 2 1 10 10 H 1.08997 * 109.47213 * 54.73357 * 9 7 2 11 11 O 1.45202 * 109.46882 * 294.73092 * 9 7 2 12 12 C 1.34231 * 116.99726 * 150.00307 * 11 9 7 13 13 O 1.20829 * 120.00277 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00012 * 180.02562 * 12 11 9 15 15 H 1.08999 * 109.26517 * 59.49821 * 14 12 11 16 16 C 1.52871 * 109.26737 * 299.99667 * 14 12 11 17 17 C 1.53301 * 108.59404 * 184.83993 * 16 14 12 18 18 C 1.52878 * 108.72761 * 74.35118 * 17 16 14 19 19 C 1.52758 * 110.13300 * 305.75640 * 18 17 16 20 20 H 1.08990 * 114.77296 * 231.95412 * 19 18 17 21 21 C 1.53655 * 116.20091 * 89.95779 * 19 18 17 22 22 C 1.52064 * 120.58683 * 21.12916 * 19 18 17 23 23 H 1.09003 * 115.92938 * 210.17639 * 22 19 18 24 24 C 1.53000 * 109.47120 * 174.72881 * 9 7 2 25 25 C 1.52997 * 117.50216 * 254.05115 * 24 9 7 26 26 C 1.53003 * 117.49621 * 185.38740 * 24 9 7 27 27 H 0.97004 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.61879 * 65.11276 * 16 14 12 29 29 H 1.08998 * 109.76488 * 304.66449 * 16 14 12 30 30 H 1.08994 * 109.62212 * 194.17052 * 17 16 14 31 31 H 1.08998 * 109.61874 * 314.53665 * 17 16 14 32 32 H 1.09005 * 109.35919 * 65.78171 * 18 17 16 33 33 H 1.08997 * 109.35885 * 185.35688 * 18 17 16 34 34 H 1.08994 * 117.53853 * 140.93516 * 21 19 18 35 35 H 1.08999 * 117.53819 * 355.68342 * 21 19 18 36 36 H 1.09004 * 115.54682 * 39.72630 * 24 9 7 37 37 H 1.08998 * 117.49530 * 359.97438 * 25 24 9 38 38 H 1.08997 * 117.49839 * 145.02404 * 25 24 9 39 39 H 1.09003 * 117.49862 * 214.97896 * 26 24 9 40 40 H 1.08998 * 117.50016 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6053 1.9837 -1.3945 5 1 1.3964 2.6816 0.5885 6 1 3.4880 1.4741 0.8059 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0797 9 6 3.5075 -1.1963 0.1095 10 1 3.8077 -0.6399 0.9974 11 8 4.0800 -0.5719 -1.0697 12 6 5.2525 0.0629 -0.9146 13 8 5.7826 0.0961 0.1707 14 6 5.9072 0.7352 -2.0938 15 1 5.2361 1.4960 -2.4922 16 6 6.1881 -0.3068 -3.1765 17 6 6.9615 0.3679 -4.3153 18 6 8.4030 0.5977 -3.8609 19 6 8.4222 1.3751 -2.5460 20 1 9.0557 2.2619 -2.5490 21 6 8.3976 0.5341 -1.2603 22 6 7.2003 1.3951 -1.6411 23 1 7.0654 2.2959 -1.0423 24 6 4.0087 -2.6379 0.2176 25 6 4.4963 -3.1155 1.5869 26 6 5.5036 -2.8493 0.4653 27 1 -0.4850 0.8401 0.0004 28 1 5.2462 -0.7016 -3.5576 29 1 6.7838 -1.1192 -2.7606 30 1 6.9532 -0.2756 -5.1949 31 1 6.4971 1.3240 -4.5569 32 1 8.8939 -0.3646 -3.7160 33 1 8.9372 1.1619 -4.6254 34 1 9.0148 0.8695 -0.4269 35 1 8.2957 -0.5459 -1.3664 36 1 3.4959 -3.3625 -0.4150 37 1 4.4605 -2.4026 2.4106 38 1 4.3047 -4.1545 1.8550 39 1 5.9743 -3.7133 -0.0038 40 1 6.1301 -1.9614 0.5509 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520417543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:37 Heat of formation + Delta-G solvation = -50.936204 kcal Electronic energy + Delta-G solvation = -21162.218942 eV Core-core repulsion = 18136.043892 eV Total energy + Delta-G solvation = -3026.175050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35783 -38.76142 -36.51394 -35.00377 -33.11633 -32.67793 -31.18961 -28.47748 -25.29622 -23.26860 -22.65197 -21.85342 -21.69523 -20.35526 -19.31323 -18.27817 -17.15814 -16.77575 -16.42508 -15.75027 -15.23211 -14.57206 -14.11475 -13.90132 -13.74276 -13.39409 -13.28267 -12.88395 -12.50318 -12.21032 -11.90241 -11.49928 -11.35238 -11.20364 -11.09832 -10.90852 -10.87842 -10.70473 -10.33056 -10.17698 -10.01475 -9.78898 -9.70626 -9.55662 -9.39083 -9.30410 -8.95489 -8.78101 -6.32277 -4.38965 3.01827 3.22955 3.28672 3.36240 3.46927 3.99444 4.29112 4.54596 4.57506 4.77991 4.87250 4.97103 5.12289 5.16537 5.23779 5.37594 5.44594 5.48324 5.57069 5.67162 5.67358 5.69762 5.89938 5.92933 5.99410 6.06616 6.10144 6.17859 6.19271 6.26292 6.30400 6.37689 6.38826 6.52259 6.64258 6.76390 7.01149 7.40800 7.71768 8.26785 8.70395 8.81320 9.28807 10.77064 Molecular weight = 264.15amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.007678 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.610908 B = 3646.089381 C = 4315.053707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.088 3.912 3 Si 0.874 3.126 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.506 4.506 8 H 0.088 0.912 9 C 0.206 3.794 10 H 0.050 0.950 11 O -0.353 6.353 12 C 0.450 3.550 13 O -0.518 6.518 14 C -0.058 4.058 15 H 0.102 0.898 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.149 4.149 20 H 0.101 0.899 21 C -0.162 4.162 22 C -0.122 4.122 23 H 0.100 0.900 24 C -0.138 4.138 25 C -0.171 4.171 26 C -0.200 4.200 27 H 0.270 0.730 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.998 1.057 -6.494 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.119 4.119 3 Si 0.701 3.299 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.542 4.542 8 H 0.106 0.894 9 C 0.155 3.845 10 H 0.068 0.932 11 O -0.270 6.270 12 C 0.294 3.706 13 O -0.409 6.409 14 C -0.078 4.078 15 H 0.120 0.880 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.127 4.127 19 C -0.167 4.167 20 H 0.119 0.881 21 C -0.199 4.199 22 C -0.141 4.141 23 H 0.118 0.882 24 C -0.156 4.156 25 C -0.208 4.208 26 C -0.237 4.237 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.940 1.128 -6.139 16.191 hybrid contribution 0.261 0.908 0.189 0.964 sum 15.201 2.036 -5.950 16.451 Atomic orbital electron populations 1.69891 1.06396 1.27854 1.46972 1.25058 0.94760 0.99578 0.92496 0.86889 0.80650 0.82876 0.79441 1.19434 1.21602 1.18383 1.20996 0.86780 0.95302 1.51168 0.89359 1.20755 0.92950 0.87047 0.83771 0.93208 1.86967 1.32524 1.62268 1.45202 1.23428 0.80918 0.76807 0.89487 1.90512 1.64040 1.58349 1.27981 1.20396 0.95394 0.98288 0.93694 0.87986 1.21544 1.01657 0.96972 0.94608 1.21585 0.95259 1.01065 0.97604 1.21076 0.96991 0.99611 0.94997 1.22280 1.01022 1.01311 0.92124 0.88086 1.22980 1.01065 0.98069 0.97753 1.21424 0.88709 1.01580 1.02342 0.88153 1.22613 0.94772 0.99272 0.98982 1.22795 1.04194 1.01139 0.92642 1.23169 0.93455 1.03211 1.03891 0.91982 0.89915 0.91402 0.91440 0.91444 0.91692 0.91667 0.89044 0.88861 0.88123 0.89099 0.89515 0.90167 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.96 55.43 0.77 -25.23 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 3 Si 0.87 22.20 25.56 -169.99 -4.34 17.86 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.70 6.42 56.52 0.36 -6.34 16 7 C -0.51 -14.24 9.35 -34.44 -0.32 -14.56 16 8 H 0.09 2.62 7.99 -52.49 -0.42 2.20 16 9 C 0.21 5.11 1.53 -27.88 -0.04 5.06 16 10 H 0.05 1.33 5.90 -51.93 -0.31 1.02 16 11 O -0.35 -8.31 8.10 -39.26 -0.32 -8.63 16 12 C 0.45 9.46 5.57 36.00 0.20 9.66 16 13 O -0.52 -11.69 12.60 -18.75 -0.24 -11.93 16 14 C -0.06 -0.96 2.68 -92.31 -0.25 -1.21 16 15 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 16 C -0.11 -1.54 4.89 -26.64 -0.13 -1.67 16 17 C -0.12 -1.28 5.92 -26.64 -0.16 -1.44 16 18 C -0.09 -0.90 5.85 -26.92 -0.16 -1.06 16 19 C -0.15 -1.71 6.18 -90.88 -0.56 -2.28 16 20 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 21 C -0.16 -2.16 9.17 -26.74 -0.25 -2.40 16 22 C -0.12 -1.79 4.69 -91.92 -0.43 -2.22 16 23 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 24 C -0.14 -2.95 5.29 -90.62 -0.48 -3.43 16 25 C -0.17 -3.19 10.18 -26.69 -0.27 -3.47 16 26 C -0.20 -3.73 9.82 -26.69 -0.26 -4.00 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 28 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 29 H 0.07 0.95 7.13 -51.93 -0.37 0.58 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 32 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.29 7.27 -51.93 -0.38 0.92 16 36 H 0.10 2.12 8.14 -51.93 -0.42 1.69 16 37 H 0.09 1.75 8.08 -51.93 -0.42 1.33 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.10 2.09 5.58 -51.93 -0.29 1.80 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -30.24 315.24 -9.00 -39.24 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.42 Total: 4.52 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -3.21 Total: -20.58 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.77 Total: -25.23 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.55 Total: -20.56 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.34 Total: 17.86 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.24 -9.00 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520417543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.694 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds