Wall clock time and date at job start Sun Mar 29 2020 23:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46834 * 2 1 4 4 C 1.52996 * 109.47060 * 119.99605 * 2 1 3 5 5 N 1.46507 * 109.47226 * 175.00365 * 4 2 1 6 6 C 1.34768 * 120.00065 * 180.02562 * 5 4 2 7 7 O 1.21511 * 120.00065 * 359.97438 * 6 5 4 8 8 C 1.48156 * 119.99771 * 180.02562 * 6 5 4 9 9 C 1.39441 * 120.09379 * 179.97438 * 8 6 5 10 10 N 1.32084 * 119.87117 * 179.76472 * 9 8 6 11 11 C 1.32139 * 120.07099 * 0.51324 * 10 9 8 12 12 C 1.38737 * 120.19215 * 359.48392 * 11 10 9 13 13 N 1.31797 * 120.12667 * 0.25855 * 12 11 10 14 14 N 1.46500 * 109.47553 * 239.99997 * 2 1 3 15 15 C 1.46500 * 119.99478 * 300.00065 * 14 2 1 16 16 C 1.36929 * 120.00248 * 119.99455 * 14 2 1 17 17 H 1.08004 * 119.99758 * 23.09948 * 16 14 2 18 18 C 1.38815 * 120.00434 * 203.09863 * 16 14 2 19 19 N 1.31622 * 119.99528 * 12.99615 * 18 16 14 20 20 Si 1.86795 * 120.00128 * 192.99490 * 18 16 14 21 21 H 1.48496 * 109.47396 * 60.00258 * 20 18 16 22 22 H 1.48506 * 109.47019 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47387 * 299.99879 * 20 18 16 24 24 H 1.09004 * 109.47133 * 60.00882 * 1 2 3 25 25 H 1.09005 * 109.46834 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47548 * 300.00046 * 1 2 3 27 27 H 1.08997 * 109.47395 * 55.00831 * 4 2 1 28 28 H 1.08999 * 109.47425 * 295.00105 * 4 2 1 29 29 H 0.97000 * 119.99673 * 0.02562 * 5 4 2 30 30 H 1.07994 * 120.06671 * 359.97438 * 9 8 6 31 31 H 1.08001 * 119.90712 * 179.76957 * 11 10 9 32 32 H 1.08005 * 119.93441 * 180.28070 * 12 11 10 33 33 H 1.08999 * 109.47193 * 95.12785 * 15 14 2 34 34 H 1.09004 * 109.46536 * 215.12553 * 15 14 2 35 35 H 1.09000 * 109.47460 * 335.12157 * 15 14 2 36 36 H 0.96995 * 119.99849 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5001 -0.8262 1.1907 6 6 4.1730 -1.4289 2.1908 7 8 3.5687 -1.8848 3.1413 8 6 5.6496 -1.5346 2.1317 9 6 6.3479 -2.1573 3.1657 10 7 7.6639 -2.2533 3.1063 11 6 8.3184 -1.7512 2.0740 12 6 7.6265 -1.1311 1.0438 13 7 6.3129 -1.0356 1.0927 14 7 2.0184 -0.6906 -1.1961 15 6 1.6645 -2.0932 -1.4279 16 6 2.8056 -0.0251 -2.0975 17 1 3.3700 0.8412 -1.7853 18 6 2.8782 -0.4639 -3.4125 19 7 2.0110 -1.3469 -3.8604 20 14 4.2066 0.1989 -4.5462 21 1 5.5429 -0.1253 -3.9857 22 1 4.0680 -0.4228 -5.8877 23 1 4.0646 1.6721 -4.6670 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6055 -1.7197 1.2952 28 1 1.7516 -0.1582 2.1370 29 1 3.9824 -0.4620 0.4320 30 1 5.8135 -2.5634 4.0117 31 1 9.3948 -1.8279 2.0300 32 1 8.1654 -0.7262 0.1998 33 1 0.7892 -2.1448 -2.0754 34 1 2.5004 -2.6046 -1.9053 35 1 1.4408 -2.5737 -0.4754 36 1 2.0620 -1.6537 -4.7791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734026665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:54 Heat of formation + Delta-G solvation = 37.782025 kcal Electronic energy + Delta-G solvation = -19966.729200 eV Core-core repulsion = 16873.153669 eV Total energy + Delta-G solvation = -3093.575531 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24796 -39.06741 -36.73791 -34.60017 -33.70770 -32.09677 -31.59938 -29.33671 -26.51427 -26.01915 -24.93306 -24.26556 -23.00847 -20.59730 -19.43345 -17.91547 -17.55349 -16.94345 -16.80503 -15.54316 -15.43520 -15.08118 -14.97229 -14.28424 -13.90241 -13.81684 -13.00157 -12.75643 -12.72157 -12.31780 -12.04043 -11.77252 -11.44143 -11.38270 -11.09462 -10.82696 -10.75053 -10.43477 -10.30437 -10.14193 -9.90176 -9.78919 -9.56994 -9.17431 -8.61488 -8.55467 -6.79856 -5.74356 -3.21967 0.32327 0.93877 2.85398 3.31766 3.36470 3.42331 3.42613 3.77846 4.00220 4.05270 4.35085 4.46266 4.80832 5.03391 5.18991 5.36491 5.38730 5.41288 5.57140 5.89801 6.05920 6.13900 6.18118 6.27698 6.42521 6.73086 6.80853 6.83801 6.97396 7.03723 7.37095 7.50294 7.72159 7.78250 7.95705 8.36342 8.47303 9.20535 9.83439 10.32823 11.29904 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.006723 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.250269 B = 4163.858174 C = 5492.275626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.102 3.898 5 N -0.679 5.679 6 C 0.565 3.435 7 O -0.547 6.547 8 C 0.039 3.961 9 C 0.103 3.897 10 N -0.443 5.443 11 C 0.064 3.936 12 C 0.052 3.948 13 N -0.403 5.403 14 N -0.593 5.593 15 C 0.164 3.836 16 C -0.259 4.259 17 H 0.068 0.932 18 C 0.006 3.994 19 N -0.904 5.904 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.284 1.284 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.421 0.579 30 H 0.181 0.819 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.031 0.969 34 H 0.038 0.962 35 H -0.002 1.002 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 0.797 10.066 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.088 0.912 4 C -0.023 4.023 5 N -0.329 5.329 6 C 0.347 3.653 7 O -0.425 6.425 8 C -0.103 4.103 9 C -0.057 4.057 10 N -0.158 5.158 11 C -0.097 4.097 12 C -0.110 4.110 13 N -0.120 5.120 14 N -0.316 5.316 15 C 0.020 3.980 16 C -0.388 4.388 17 H 0.086 0.914 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.210 1.210 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.260 0.740 30 H 0.198 0.802 31 H 0.191 0.809 32 H 0.194 0.806 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.017 0.983 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.678 0.389 10.525 13.034 hybrid contribution 0.970 0.422 -1.285 1.664 sum 8.647 0.812 9.240 12.681 Atomic orbital electron populations 1.22181 0.97305 1.01414 1.00638 1.20625 0.92680 0.95576 0.86314 0.91250 1.22095 0.78904 1.01657 0.99659 1.45820 1.08493 1.55912 1.22641 1.17647 0.84784 0.79405 0.83420 1.90756 1.68408 1.49404 1.33954 1.22376 0.96395 0.98651 0.92866 1.23807 0.90170 0.93480 0.98259 1.68598 1.08499 1.14879 1.23776 1.24071 1.02179 0.93245 0.90229 1.23918 0.90476 0.97032 0.99593 1.68474 1.09351 1.12455 1.21770 1.43960 1.58159 1.07985 1.21449 1.20728 0.99782 0.83376 0.94129 1.19137 1.18796 1.11680 0.89219 0.91415 1.25014 0.98251 0.99457 0.96592 1.70061 1.35088 1.34209 1.15514 0.86365 0.81909 0.78399 0.80022 1.20990 1.21782 1.21001 0.92126 0.93131 0.93933 0.91691 0.92036 0.74020 0.80153 0.80882 0.80603 0.95119 0.94286 0.98332 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.19 37.16 0.34 -2.38 16 2 C 0.16 3.02 2.87 -67.93 -0.19 2.82 16 3 H 0.07 1.32 7.87 -51.93 -0.41 0.92 16 4 C 0.10 1.82 4.93 -4.04 -0.02 1.80 16 5 N -0.68 -12.29 5.38 -61.15 -0.33 -12.62 16 6 C 0.56 9.95 7.81 -12.19 -0.10 9.86 16 7 O -0.55 -10.49 16.35 5.36 0.09 -10.40 16 8 C 0.04 0.60 6.75 -82.84 -0.56 0.04 16 9 C 0.10 1.39 10.77 -17.00 -0.18 1.21 16 10 N -0.44 -5.51 10.49 -12.71 -0.13 -5.64 16 11 C 0.06 0.63 11.23 -17.24 -0.19 0.44 16 12 C 0.05 0.58 11.22 -17.38 -0.20 0.39 16 13 N -0.40 -6.04 9.71 -9.61 -0.09 -6.13 16 14 N -0.59 -13.87 2.28 -173.48 -0.40 -14.26 16 15 C 0.16 3.96 8.00 59.85 0.48 4.44 16 16 C -0.26 -6.67 9.31 -15.06 -0.14 -6.81 16 17 H 0.07 1.69 7.82 -52.48 -0.41 1.28 16 18 C 0.01 0.15 5.10 -17.43 -0.09 0.07 16 19 N -0.90 -25.72 10.72 55.49 0.59 -25.12 16 20 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.89 7.67 -51.93 -0.40 0.50 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.22 6.86 -51.93 -0.36 0.86 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.42 8.06 7.24 -40.82 -0.30 7.77 16 30 H 0.18 2.23 7.65 -52.49 -0.40 1.82 16 31 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.18 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 34 H 0.04 1.02 7.35 -51.93 -0.38 0.64 16 35 H 0.00 -0.04 6.53 -51.93 -0.34 -0.38 16 36 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 308.22 15.07 4.64 4.64 Total: -1.00 -30.74 308.22 -6.12 -36.86 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.62 Total: 4.66 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -0.85 Total: 11.85 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -0.36 Total: -63.79 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.74 -6.12 -36.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734026665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.642 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds