Wall clock time and date at job start Mon Mar 30 2020 00:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34773 * 120.59567 * 124.66310 * 12 11 10 14 14 O 1.21285 * 119.99778 * 179.97438 * 13 12 11 15 15 C 1.50694 * 120.00178 * 359.97438 * 13 12 11 16 16 H 1.08998 * 115.52573 * 325.48971 * 15 13 12 17 17 C 1.52992 * 117.46481 * 110.95258 * 15 13 12 18 18 H 1.08999 * 119.29790 * 356.29184 * 17 15 13 19 19 C 1.56195 * 117.01995 * 200.67631 * 17 15 13 20 20 C 1.54894 * 104.25289 * 272.19489 * 19 17 15 21 21 C 1.54890 * 102.75161 * 38.32152 * 20 19 17 22 22 C 1.52998 * 117.46282 * 179.97438 * 15 13 12 23 23 H 1.09000 * 119.29613 * 3.70244 * 22 15 13 24 24 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 25 25 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 26 26 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 28 28 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 29 29 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 30 30 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 31 31 H 1.08991 * 110.13484 * 153.65506 * 19 17 15 32 32 H 1.08997 * 110.88593 * 31.10294 * 19 17 15 33 33 H 1.08995 * 110.75908 * 280.00379 * 20 19 17 34 34 H 1.08998 * 110.91340 * 156.70628 * 20 19 17 35 35 H 1.09000 * 110.48743 * 203.37634 * 21 20 19 36 36 H 1.09002 * 110.48855 * 80.72882 * 21 20 19 37 37 H 1.08996 * 109.61476 * 295.47839 * 24 12 11 38 38 H 1.09010 * 109.61052 * 174.96625 * 24 12 11 39 39 H 1.09003 * 109.61422 * 354.94072 * 25 9 7 40 40 H 1.08999 * 109.61487 * 115.28316 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3442 -5.7197 2.2441 14 8 -0.5927 -5.6869 3.0136 15 6 0.8051 -7.0362 1.6738 16 1 1.1785 -6.9998 0.6504 17 6 1.4700 -8.0263 2.6321 18 1 1.6440 -7.7319 3.6671 19 6 2.3717 -9.1322 1.9968 20 6 1.3906 -10.2878 1.6784 21 6 0.1248 -9.5379 1.1940 22 6 0.0500 -8.2951 2.1051 23 1 -0.8220 -8.1986 2.7519 24 6 0.5344 -3.2876 2.4474 25 6 0.2343 -2.3368 1.2819 26 1 -0.4850 0.8401 -0.0004 27 1 1.0134 -4.0707 -0.8208 28 1 2.7052 -3.5085 -0.8012 29 1 3.0125 -4.2759 1.4845 30 1 2.2517 -5.6159 0.5906 31 1 3.1259 -9.4584 2.7127 32 1 2.8446 -8.7708 1.0837 33 1 1.1755 -10.8698 2.5745 34 1 1.7860 -10.9277 0.8896 35 1 -0.7605 -10.1603 1.3241 36 1 0.2333 -9.2405 0.1510 37 1 1.3246 -2.8665 3.0689 38 1 -0.3666 -3.4306 3.0440 39 1 0.0946 -1.3248 1.6621 40 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250898289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:06 Heat of formation + Delta-G solvation = -1.342349 kcal Electronic energy + Delta-G solvation = -20435.155886 eV Core-core repulsion = 17443.424138 eV Total energy + Delta-G solvation = -2991.731748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55791 -39.71351 -38.27730 -35.66117 -33.13397 -32.87556 -31.79966 -29.02888 -28.79361 -26.07809 -25.02918 -23.97499 -22.07938 -21.35572 -20.66848 -20.03077 -18.91972 -17.95095 -17.20148 -16.76392 -16.35670 -15.93257 -15.52272 -15.44648 -15.26197 -15.01884 -14.51482 -14.13733 -13.93268 -13.80164 -13.35467 -13.12133 -12.62322 -12.53886 -12.39595 -12.33300 -12.22193 -12.04611 -11.94705 -11.89353 -11.71325 -11.65314 -11.12148 -10.84009 -10.64978 -10.57869 -9.86105 -8.68602 -7.89861 -5.39270 1.41670 1.48239 1.51047 1.57520 1.96609 2.50363 2.71916 3.25146 3.33818 3.56604 3.73168 3.77580 3.93935 4.15782 4.20501 4.24144 4.30241 4.36478 4.47128 4.52281 4.55045 4.62838 4.71158 4.76819 4.85631 4.86997 5.01394 5.03378 5.18895 5.22062 5.24886 5.25395 5.30902 5.41904 5.53766 5.58548 5.65195 6.33405 6.47947 7.07132 7.13662 7.76847 8.30762 9.15508 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.043373 B = 0.004308 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.410902 B = 6498.493310 C = 6775.868199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.266 4.266 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.125 3.875 11 C 0.100 3.900 12 N -0.598 5.598 13 C 0.532 3.468 14 O -0.597 6.597 15 C -0.169 4.169 16 H 0.141 0.859 17 C -0.126 4.126 18 H 0.104 0.896 19 C -0.089 4.089 20 C -0.117 4.117 21 C -0.093 4.093 22 C -0.141 4.141 23 H 0.094 0.906 24 C 0.101 3.899 25 C 0.171 3.829 26 H 0.251 0.749 27 H 0.015 0.985 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.070 0.930 40 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 -19.395 2.111 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.202 1.202 7 C -0.396 4.396 8 H 0.095 0.905 9 N -0.332 5.332 10 C -0.001 4.001 11 C -0.023 4.023 12 N -0.328 5.328 13 C 0.322 3.678 14 O -0.479 6.479 15 C -0.190 4.190 16 H 0.158 0.842 17 C -0.145 4.145 18 H 0.122 0.878 19 C -0.126 4.126 20 C -0.154 4.154 21 C -0.130 4.130 22 C -0.160 4.160 23 H 0.112 0.888 24 C -0.023 4.023 25 C 0.044 3.956 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 6.254 -19.228 2.478 20.371 hybrid contribution -0.385 1.719 0.058 1.762 sum 5.869 -17.509 2.537 18.640 Atomic orbital electron populations 1.70187 1.06957 1.26134 1.55066 1.25884 0.95951 1.01848 1.00878 0.85285 0.77474 0.78835 0.78500 1.19774 1.22414 1.20247 1.19563 0.93267 0.85631 1.41143 0.90525 1.44255 1.36278 1.02918 1.49766 1.21597 0.98571 0.85995 0.93976 1.22498 0.87534 1.01739 0.90529 1.48079 1.33105 1.06066 1.45598 1.20353 0.81489 0.85654 0.80303 1.90611 1.30822 1.87577 1.38879 1.22362 1.07629 0.87395 1.01596 0.84163 1.23783 0.95745 0.97376 0.97571 0.87796 1.22385 0.96767 0.92448 1.01012 1.22674 0.93834 0.97082 1.01842 1.22046 0.99544 0.93111 0.98316 1.23304 0.96154 0.93863 1.02670 0.88766 1.22117 0.99771 0.83553 0.96886 1.20862 0.88190 0.97713 0.88821 0.94033 0.96696 0.89881 0.90676 0.86573 0.89679 0.89827 0.90913 0.89125 0.90306 0.90541 0.91553 0.91007 0.91160 0.99136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.64 11.20 21.65 0.24 -55.40 16 2 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 3 Si 0.97 44.03 29.59 68.60 2.03 46.06 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.27 -14.20 9.57 84.03 0.80 -13.40 16 8 H 0.08 3.87 7.89 -2.91 -0.02 3.84 16 9 N -0.61 -30.14 2.96 -697.35 -2.06 -32.20 16 10 C 0.12 4.82 6.70 86.56 0.58 5.40 16 11 C 0.10 3.10 6.52 86.56 0.56 3.66 16 12 N -0.60 -22.12 2.95 -817.16 -2.41 -24.53 16 13 C 0.53 19.25 7.48 87.66 0.66 19.90 16 14 O -0.60 -26.15 15.73 -3.05 -0.05 -26.20 16 15 C -0.17 -4.36 4.61 -11.54 -0.05 -4.41 16 16 H 0.14 3.02 6.60 -2.39 -0.02 3.00 16 17 C -0.13 -2.64 6.81 -9.41 -0.06 -2.70 16 18 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 19 C -0.09 -1.19 6.66 32.35 0.22 -0.98 16 20 C -0.12 -1.39 6.91 31.89 0.22 -1.16 16 21 C -0.09 -1.47 6.63 31.68 0.21 -1.26 16 22 C -0.14 -3.29 6.34 -10.08 -0.06 -3.36 16 23 H 0.09 2.67 7.78 -2.39 -0.02 2.65 16 24 C 0.10 4.30 6.59 86.42 0.57 4.87 16 25 C 0.17 8.62 5.51 86.42 0.48 9.09 16 26 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.08 2.92 7.93 -2.39 -0.02 2.90 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.12 2.64 5.51 -2.39 -0.01 2.62 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.07 3.14 6.99 -2.38 -0.02 3.12 16 39 H 0.07 3.94 6.00 -2.39 -0.01 3.92 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 Total: -1.00 -69.04 315.56 3.30 -65.74 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.02 Total: 13.22 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 4.53 Total: 13.31 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -4.23 Total: -112.13 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.04 3.30 -65.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250898289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.394 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds