Wall clock time and date at job start Mon Mar 30 2020 00:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48503 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47184 * 300.00051 * 3 2 1 6 6 H 1.48499 * 109.47399 * 60.00085 * 3 2 1 7 7 C 1.37879 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99347 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46715 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46992 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47112 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99479 * 66.04700 * 12 11 10 14 14 C 1.53008 * 109.46879 * 196.32606 * 13 12 11 15 15 O 1.42899 * 109.47004 * 63.91049 * 14 13 12 16 16 C 1.46902 * 111.00341 * 189.99811 * 12 11 10 17 17 C 1.50697 * 109.46759 * 76.14760 * 16 12 11 18 18 C 1.38671 * 120.42297 * 263.81928 * 17 16 12 19 19 C 1.38630 * 118.42068 * 179.78472 * 18 17 16 20 20 C 1.38220 * 119.16249 * 0.51382 * 19 18 17 21 21 N 1.31853 * 120.76357 * 359.72937 * 20 19 18 22 22 C 1.31885 * 121.72698 * 359.97438 * 21 20 19 23 23 H 0.96996 * 120.00079 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47354 * 60.00569 * 9 7 2 25 25 H 1.08997 * 109.47640 * 299.99534 * 9 7 2 26 26 H 1.08999 * 109.47260 * 59.99811 * 10 9 7 27 27 H 1.09004 * 109.47123 * 299.99618 * 10 9 7 28 28 H 1.08997 * 109.47502 * 299.99705 * 11 10 9 29 29 H 1.08999 * 109.47271 * 59.99819 * 11 10 9 30 30 H 1.08998 * 109.47620 * 316.32461 * 13 12 11 31 31 H 1.08995 * 109.47231 * 76.33017 * 13 12 11 32 32 H 1.08994 * 109.47251 * 183.90954 * 14 13 12 33 33 H 1.09003 * 109.47098 * 303.91450 * 14 13 12 34 34 H 0.96696 * 114.00368 * 180.02562 * 15 14 13 35 35 H 1.08995 * 109.47208 * 196.14950 * 16 12 11 36 36 H 1.09003 * 109.47043 * 316.15785 * 16 12 11 37 37 H 1.08000 * 120.79124 * 0.03037 * 18 17 16 38 38 H 1.08001 * 120.41912 * 180.22504 * 19 18 17 39 39 H 1.08001 * 119.62321 * 179.74758 * 20 19 18 40 40 H 1.07998 * 119.62327 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4349 -6.1036 0.0006 13 6 3.2011 -6.1418 1.2534 14 6 4.4351 -7.0275 1.0697 15 8 5.2981 -6.4451 0.0909 16 6 1.7504 -7.3815 -0.2370 17 6 1.3997 -7.4995 -1.6978 18 6 0.1360 -7.1475 -2.1473 19 6 -0.1404 -7.2682 -3.5004 20 6 0.8424 -7.7421 -4.3489 21 7 2.0318 -8.0723 -3.8854 22 6 2.3318 -7.9650 -2.6056 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 0.8540 -5.0446 0.8914 29 1 0.8533 -5.0451 -0.8885 30 1 3.5148 -5.1321 1.5184 31 1 2.5769 -6.5488 2.0488 32 1 4.9661 -7.1120 2.0179 33 1 4.1251 -8.0182 0.7373 34 1 6.1025 -6.9546 -0.0774 35 1 2.4072 -8.2038 0.0466 36 1 0.8391 -7.4219 0.3597 37 1 -0.6139 -6.7842 -1.4602 38 1 -1.1128 -6.9997 -3.8860 39 1 0.6338 -7.8430 -5.4038 40 1 3.3170 -8.2447 -2.2630 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268661279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:18 Heat of formation + Delta-G solvation = -45.426408 kcal Electronic energy + Delta-G solvation = -19812.016736 eV Core-core repulsion = 16818.373360 eV Total energy + Delta-G solvation = -2993.643376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13660 -39.23391 -37.14542 -35.74908 -33.95514 -33.20175 -32.41265 -30.07517 -28.55335 -26.40939 -24.61589 -24.22251 -23.25879 -22.15106 -21.17855 -18.53244 -18.30860 -17.92127 -17.32836 -16.88471 -16.69656 -16.37005 -15.94668 -15.47634 -14.85663 -14.70176 -14.55342 -14.24608 -14.03402 -13.95528 -13.70761 -13.50825 -13.17207 -13.11516 -12.69268 -12.53357 -12.31443 -12.14685 -11.73039 -11.44342 -11.37138 -11.10783 -10.75587 -10.66254 -10.56367 -10.37852 -9.87233 -9.18740 -8.21845 -6.32535 0.22071 0.38516 1.38028 1.38612 1.52458 2.39708 2.75863 3.11062 3.16743 3.55818 3.60188 3.85455 3.94059 4.10133 4.11454 4.14481 4.21602 4.33079 4.42382 4.52139 4.63106 4.69925 4.71755 4.78032 4.81004 4.86736 4.94977 5.04677 5.09638 5.22460 5.25159 5.36576 5.50885 5.72811 5.83057 5.84384 6.09354 6.21108 6.27559 6.83530 7.07744 7.12242 7.36569 8.90275 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.004864 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.450646 B = 5755.612099 C = 6798.730560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.085 4.085 11 C 0.070 3.930 12 N -0.533 5.533 13 C 0.041 3.959 14 C 0.086 3.914 15 O -0.584 6.584 16 C 0.096 3.904 17 C -0.129 4.129 18 C -0.083 4.083 19 C -0.174 4.174 20 C 0.081 3.919 21 N -0.514 5.514 22 C 0.107 3.893 23 H 0.264 0.736 24 H -0.011 1.011 25 H -0.006 1.006 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.388 0.612 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -20.102 -0.367 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.123 4.123 11 C -0.058 4.058 12 N -0.257 5.257 13 C -0.086 4.086 14 C 0.008 3.992 15 O -0.391 6.391 16 C -0.031 4.031 17 C -0.131 4.131 18 C -0.109 4.109 19 C -0.194 4.194 20 C -0.075 4.075 21 N -0.223 5.223 22 C -0.050 4.050 23 H 0.073 0.927 24 H 0.007 0.993 25 H 0.012 0.988 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.237 0.763 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.193 0.807 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.048 -19.792 -1.323 20.245 hybrid contribution -0.731 0.998 1.177 1.708 sum 3.317 -18.794 -0.146 19.085 Atomic orbital electron populations 1.70090 1.07690 1.27727 1.51745 1.25952 0.95797 1.03243 0.94635 0.85417 0.78980 0.78792 0.77985 1.18919 1.20210 1.19968 1.21689 0.93332 0.92550 1.50503 0.92792 1.18950 0.94279 0.92995 0.94665 1.21358 0.97764 0.93202 1.00002 1.22004 0.93551 0.90408 0.99846 1.61902 1.25898 1.02330 1.35575 1.22351 0.94606 1.01452 0.90226 1.22239 0.90037 0.95270 0.91636 1.86647 1.36641 1.53778 1.62074 1.21062 0.98565 0.92497 0.90983 1.20872 0.94581 0.99942 0.97700 1.21820 0.96718 0.95684 0.96725 1.22415 1.02234 1.00753 0.93992 1.23180 0.88380 0.94468 1.01488 1.67691 1.21324 1.16753 1.16501 1.22763 0.99280 0.94928 0.87998 0.92699 0.99270 0.98769 0.93298 0.94364 0.95064 0.91944 0.91638 0.91623 0.91620 0.92064 0.76314 0.87685 0.92907 0.84339 0.82580 0.80666 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 2 C 0.00 0.08 5.46 84.66 0.46 0.55 16 3 Si 0.96 45.60 29.54 68.60 2.03 47.62 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -32.39 9.11 25.60 0.23 -32.15 16 8 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.09 -3.82 5.12 30.60 0.16 -3.66 16 11 C 0.07 2.48 4.78 86.30 0.41 2.89 16 12 N -0.53 -15.39 4.31 -900.78 -3.88 -19.27 16 13 C 0.04 1.03 5.22 86.31 0.45 1.48 16 14 C 0.09 1.64 7.19 71.98 0.52 2.16 16 15 O -0.58 -14.04 13.59 -148.98 -2.02 -16.06 16 16 C 0.10 2.16 4.99 85.56 0.43 2.58 16 17 C -0.13 -3.20 5.04 -19.77 -0.10 -3.30 16 18 C -0.08 -2.01 8.62 22.47 0.19 -1.82 16 19 C -0.17 -3.86 10.11 22.36 0.23 -3.64 16 20 C 0.08 1.90 11.18 84.69 0.95 2.85 16 21 N -0.51 -14.18 10.36 -195.85 -2.03 -16.21 16 22 C 0.11 2.79 10.88 84.67 0.92 3.71 16 23 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 24 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.05 2.15 6.28 -2.39 -0.01 2.14 16 27 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 29 H 0.06 2.30 6.43 -2.39 -0.02 2.28 16 30 H 0.07 2.02 5.93 -2.39 -0.01 2.01 16 31 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.91 6.46 -2.39 -0.02 0.89 16 34 H 0.39 5.36 9.12 -74.06 -0.68 4.69 16 35 H 0.11 1.82 6.21 -2.39 -0.01 1.80 16 36 H 0.05 1.09 7.91 -2.39 -0.02 1.08 16 37 H 0.14 3.04 8.03 -2.91 -0.02 3.02 16 38 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -74.06 330.42 -0.28 -74.34 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.35 Total: 13.67 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 5.00 Total: -26.61 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -5.62 Total: -92.96 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -2.02 Total: -16.06 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.06 -0.28 -74.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268661279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.915 kcal (2) G-P(sol) polarization free energy of solvation -74.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds