Wall clock time and date at job start Mon Mar 30 2020 00:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99874 * 2 1 4 4 H 1.48500 * 109.47040 * 270.35281 * 3 2 1 5 5 H 1.48504 * 109.47207 * 30.35751 * 3 2 1 6 6 H 1.48509 * 109.47023 * 150.35467 * 3 2 1 7 7 C 1.37873 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00162 * 345.93029 * 7 2 1 9 9 C 1.50701 * 120.00037 * 165.92427 * 7 2 1 10 10 C 1.53003 * 115.55000 * 324.64452 * 9 7 2 11 11 N 1.46896 * 109.47248 * 306.42370 * 10 9 7 12 12 C 1.48242 * 110.99745 * 297.88304 * 11 10 9 13 13 C 1.51307 * 104.82408 * 267.21536 * 12 11 10 14 14 O 1.21277 * 125.75375 * 163.45014 * 13 12 11 15 15 N 1.34847 * 108.49867 * 343.57732 * 13 12 11 16 16 C 1.46500 * 125.20692 * 179.48977 * 15 13 12 17 17 C 1.53005 * 109.47077 * 269.69140 * 16 15 13 18 18 C 1.52994 * 117.49782 * 184.99569 * 17 16 15 19 19 C 1.52995 * 60.00205 * 252.51385 * 18 17 16 20 20 C 1.46809 * 109.58962 * 359.22089 * 15 13 12 21 21 C 1.53004 * 117.49852 * 110.31507 * 9 7 2 22 22 C 1.53002 * 117.50041 * 178.97384 * 9 7 2 23 23 H 0.97001 * 119.99977 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47143 * 186.41651 * 10 9 7 25 25 H 1.09002 * 109.46985 * 66.42015 * 10 9 7 26 26 H 1.09000 * 110.37894 * 26.23108 * 12 11 10 27 27 H 1.09002 * 110.37776 * 148.57474 * 12 11 10 28 28 H 1.09001 * 109.47650 * 149.69415 * 16 15 13 29 29 H 1.09005 * 109.47149 * 29.69176 * 16 15 13 30 30 H 1.09001 * 115.56110 * 330.69239 * 17 16 15 31 31 H 1.09006 * 117.49319 * 145.02529 * 18 17 16 32 32 H 1.08997 * 117.50689 * 0.02562 * 18 17 16 33 33 H 1.09000 * 117.49957 * 107.49564 * 19 18 17 34 34 H 1.09005 * 117.49756 * 252.48837 * 19 18 17 35 35 H 1.08997 * 110.11776 * 136.99549 * 20 15 13 36 36 H 1.08999 * 110.11876 * 258.65592 * 20 15 13 37 37 H 1.08998 * 117.49424 * 215.00573 * 21 9 7 38 38 H 1.08997 * 117.49652 * 0.02562 * 21 9 7 39 39 H 1.09000 * 117.49985 * 359.97438 * 22 9 7 40 40 H 1.09003 * 117.49365 * 144.97428 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4891 2.0507 -1.4000 5 1 1.4503 2.6505 0.7076 6 1 3.5505 1.4380 0.6926 7 6 2.0045 -1.1940 0.0005 8 1 1.4887 -2.1152 0.2283 9 6 3.4775 -1.2138 -0.3169 10 6 3.9397 -0.2026 -1.3680 11 7 3.1324 -0.3581 -2.5853 12 6 3.3123 -1.7070 -3.1733 13 6 4.4285 -1.5440 -4.1818 14 8 5.0737 -2.4439 -4.6763 15 7 4.5868 -0.2292 -4.4360 16 6 5.5771 0.3406 -5.3530 17 6 6.8674 0.6412 -4.5876 18 6 7.9895 1.3523 -5.3464 19 6 8.1251 -0.1300 -4.9928 20 6 3.6106 0.5436 -3.6580 21 6 4.4423 -1.5354 0.8263 22 6 4.1908 -2.5668 -0.2765 23 1 -0.4850 0.8401 -0.0004 24 1 4.9895 -0.3774 -1.6033 25 1 3.8182 0.8080 -0.9781 26 1 3.5962 -2.4226 -2.4017 27 1 2.3982 -2.0285 -3.6724 28 1 5.1863 1.2630 -5.7826 29 1 5.7857 -0.3721 -6.1510 30 1 6.7427 0.8817 -3.5317 31 1 8.6032 2.0607 -4.7898 32 1 7.8086 1.6064 -6.3908 33 1 8.0335 -0.8515 -5.8046 34 1 8.8283 -0.3969 -4.2038 35 1 4.0881 1.4221 -3.2241 36 1 2.7781 0.8444 -4.2939 37 1 5.4062 -1.0265 0.8295 38 1 4.0114 -1.7331 1.8078 39 1 3.5947 -3.4426 -0.0199 40 1 4.9891 -2.7366 -0.9991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602823672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:23 Heat of formation + Delta-G solvation = 39.028564 kcal Electronic energy + Delta-G solvation = -21071.771899 eV Core-core repulsion = 18081.790765 eV Total energy + Delta-G solvation = -2989.981134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95098 -39.20561 -38.38938 -37.53157 -34.43418 -34.18354 -30.35162 -28.60297 -27.88256 -26.69976 -23.51856 -23.24107 -23.17792 -22.07792 -21.04390 -20.60776 -18.54764 -17.98226 -17.52648 -17.00617 -16.61908 -16.25233 -15.76419 -15.57810 -15.17640 -15.10163 -14.77523 -14.59560 -14.34307 -13.72232 -13.52768 -13.43494 -13.12021 -12.72093 -12.67214 -12.41658 -12.32671 -12.14708 -11.62075 -11.56667 -11.42459 -11.22611 -11.09860 -10.90772 -10.48661 -10.27387 -9.90305 -9.55199 -8.17159 -6.11964 1.37301 1.39073 1.48656 1.55860 1.83015 2.48000 2.69456 2.83647 3.02684 3.39951 3.48360 3.68893 3.86080 3.91953 3.95511 4.03201 4.20065 4.23216 4.28731 4.38108 4.40891 4.48730 4.50579 4.66316 4.69807 4.74255 4.82199 4.86317 4.96241 4.98651 5.12617 5.19460 5.20794 5.28182 5.43462 5.48636 5.75761 5.94730 6.06645 6.42545 6.82989 7.00198 7.50007 8.99549 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.006846 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.168832 B = 4089.009075 C = 4312.694900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.048 3.952 3 Si 0.945 3.055 4 H -0.244 1.244 5 H -0.315 1.315 6 H -0.260 1.260 7 C -0.475 4.475 8 H 0.027 0.973 9 C -0.008 4.008 10 C 0.074 3.926 11 N -0.486 5.486 12 C 0.009 3.991 13 C 0.497 3.503 14 O -0.563 6.563 15 N -0.631 5.631 16 C 0.161 3.839 17 C -0.190 4.190 18 C -0.147 4.147 19 C -0.187 4.187 20 C 0.244 3.756 21 C -0.197 4.197 22 C -0.182 4.182 23 H 0.263 0.737 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.717 6.144 -10.649 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.151 4.151 3 Si 0.774 3.226 4 H -0.169 1.169 5 H -0.245 1.245 6 H -0.185 1.185 7 C -0.512 4.512 8 H 0.046 0.954 9 C -0.009 4.009 10 C -0.053 4.053 11 N -0.209 5.209 12 C -0.122 4.122 13 C 0.285 3.715 14 O -0.441 6.441 15 N -0.367 5.367 16 C 0.040 3.960 17 C -0.209 4.209 18 C -0.184 4.184 19 C -0.224 4.224 20 C 0.033 3.967 21 C -0.235 4.235 22 C -0.219 4.219 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.363 5.945 -10.803 18.183 hybrid contribution 0.635 0.178 0.363 0.753 sum 13.998 6.124 -10.440 18.505 Atomic orbital electron populations 1.70078 1.08418 1.27842 1.51343 1.25494 0.94711 1.02160 0.92749 0.86044 0.78163 0.79175 0.79244 1.16934 1.24456 1.18532 1.20149 0.90774 0.93354 1.46905 0.95434 1.19261 0.92594 0.93938 0.95094 1.22097 0.93644 0.99295 0.90278 1.65564 1.49446 1.03548 1.02365 1.23148 0.97992 0.93835 0.97233 1.21756 0.84221 0.82987 0.82577 1.90650 1.51781 1.45335 1.56349 1.49053 1.35182 1.07242 1.45226 1.21078 0.85381 0.99689 0.89888 1.22734 0.90807 1.07210 1.00162 1.23027 0.99486 0.94164 1.01704 1.23035 0.99970 0.95804 1.03599 1.23457 0.90819 0.93363 0.89090 1.23171 1.00916 1.04622 0.94809 1.22856 1.02901 0.93758 1.02432 0.92761 0.94291 0.91300 0.87167 0.86421 0.86911 0.90550 0.88955 0.87567 0.86877 0.89132 0.89257 0.88953 0.87198 0.89093 0.90124 0.90377 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.19 13.96 21.45 0.30 -55.89 16 2 C 0.05 2.64 5.30 84.65 0.45 3.09 16 3 Si 0.94 42.28 23.74 68.60 1.63 43.91 16 4 H -0.24 -9.66 6.95 99.48 0.69 -8.97 16 5 H -0.32 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.26 -10.98 6.85 99.48 0.68 -10.30 16 7 C -0.48 -25.80 9.23 25.60 0.24 -25.57 16 8 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 9 C -0.01 -0.34 0.92 -52.92 -0.05 -0.39 16 10 C 0.07 2.84 3.47 86.31 0.30 3.14 16 11 N -0.49 -17.87 4.79 -904.44 -4.34 -22.21 16 12 C 0.01 0.31 6.48 85.49 0.55 0.86 16 13 C 0.50 16.98 8.11 87.84 0.71 17.69 16 14 O -0.56 -22.36 17.73 -3.02 -0.05 -22.42 16 15 N -0.63 -17.35 2.97 -829.14 -2.46 -19.81 16 16 C 0.16 3.40 6.32 86.38 0.55 3.95 16 17 C -0.19 -3.91 6.01 -10.79 -0.06 -3.97 16 18 C -0.15 -2.18 10.25 30.59 0.31 -1.87 16 19 C -0.19 -3.75 10.18 30.59 0.31 -3.44 16 20 C 0.24 6.85 7.25 170.24 1.23 8.09 16 21 C -0.20 -7.74 9.96 30.62 0.30 -7.43 16 22 C -0.18 -7.13 8.02 30.62 0.25 -6.88 16 23 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 24 H 0.04 1.37 8.06 -2.39 -0.02 1.35 16 25 H 0.07 2.69 2.85 -2.39 -0.01 2.69 16 26 H 0.11 4.24 4.57 -2.39 -0.01 4.23 16 27 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.72 7.74 -2.38 -0.02 1.71 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.90 8.03 -2.39 -0.02 1.88 16 34 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.09 2.33 7.80 -2.39 -0.02 2.31 16 36 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.09 3.12 7.67 -2.39 -0.02 3.10 16 Total: -1.00 -65.87 320.12 1.15 -64.72 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.98 Total: 24.43 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 5.09 Total: -12.73 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -6.50 Total: -97.91 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.63 Total: 43.91 kcal Total: -65.87 1.15 -64.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602823672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.749 kcal (2) G-P(sol) polarization free energy of solvation -65.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds