Wall clock time and date at job start Mon Mar 30 2020 00:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48496 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47182 * 300.00457 * 3 2 1 6 6 H 1.48501 * 109.47146 * 60.00242 * 3 2 1 7 7 C 1.38812 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00289 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.47018 * 125.64856 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.26892 * 178.98909 * 10 9 7 12 12 C 1.55154 * 102.94404 * 337.80495 * 11 10 9 13 13 H 1.09002 * 111.00378 * 153.57794 * 12 11 10 14 14 N 1.46508 * 111.00515 * 277.39382 * 12 11 10 15 15 C 1.34773 * 119.99519 * 201.81953 * 14 12 11 16 16 O 1.21275 * 120.00435 * 359.97438 * 15 14 12 17 17 C 1.50707 * 119.99358 * 179.97438 * 15 14 12 18 18 C 1.53001 * 119.29713 * 250.22922 * 17 15 14 19 19 C 1.53003 * 60.37747 * 248.69772 * 18 17 15 20 20 H 1.09000 * 119.29395 * 111.31143 * 19 18 17 21 21 C 1.54271 * 118.19757 * 266.38458 * 19 18 17 22 22 C 1.54885 * 104.19537 * 87.79234 * 21 19 18 23 23 C 1.54261 * 117.41332 * 44.57532 * 17 15 14 24 24 C 1.47423 * 125.64462 * 180.02562 * 9 7 2 25 25 H 0.97002 * 120.00718 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.88436 * 59.57006 * 10 9 7 27 27 H 1.09004 * 110.01232 * 298.47415 * 10 9 7 28 28 H 1.09011 * 110.71859 * 219.44137 * 11 10 9 29 29 H 1.09000 * 110.72516 * 96.17458 * 11 10 9 30 30 H 0.96995 * 119.99891 * 21.81742 * 14 12 11 31 31 H 1.09000 * 117.45871 * 356.29429 * 18 17 15 32 32 H 1.08999 * 117.45488 * 141.12477 * 18 17 15 33 33 H 1.08998 * 110.48446 * 206.46907 * 21 19 18 34 34 H 1.09002 * 110.48735 * 328.97678 * 21 19 18 35 35 H 1.09003 * 110.75965 * 80.37211 * 22 21 19 36 36 H 1.09000 * 110.75776 * 203.55565 * 22 21 19 37 37 H 1.08995 * 110.49050 * 235.04425 * 23 17 15 38 38 H 1.08999 * 110.48901 * 357.68964 * 23 17 15 39 39 H 1.08998 * 110.36740 * 85.24884 * 24 9 7 40 40 H 1.08994 * 110.37022 * 322.92032 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7100 1.3464 -0.0006 5 1 1.8912 2.3965 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0442 -0.0259 12 6 0.8516 -4.6562 -0.6115 13 1 0.9837 -5.6854 -0.2778 14 7 0.8569 -4.5766 -2.0744 15 6 1.6377 -5.4086 -2.7916 16 8 2.3364 -6.2228 -2.2261 17 6 1.6427 -5.3272 -4.2965 18 6 1.0108 -6.4588 -5.1096 19 6 2.5271 -6.2574 -5.1451 20 1 3.1749 -7.0016 -4.6820 21 6 3.1211 -5.3909 -6.2749 22 6 3.0724 -3.9484 -5.7128 23 6 1.7103 -3.9230 -4.9315 24 6 1.9336 -3.7311 -0.0005 25 1 -0.4851 0.8400 0.0004 26 1 -0.5581 -2.0523 -0.8827 27 1 -0.5561 -2.0840 0.9014 28 1 -1.2989 -4.2517 -0.6754 29 1 -0.6309 -4.4181 0.9815 30 1 0.2984 -3.9252 -2.5267 31 1 0.6309 -7.3205 -4.5608 32 1 0.4465 -6.1830 -6.0005 33 1 4.1501 -5.6855 -6.4807 34 1 2.5145 -5.4718 -7.1769 35 1 3.9093 -3.7682 -5.0382 36 1 3.0666 -3.2184 -6.5222 37 1 0.8800 -3.7762 -5.6223 38 1 1.7053 -3.1542 -4.1588 39 1 2.1671 -4.0418 1.0178 40 1 2.8327 -3.7405 -0.6166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015342315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:35 Heat of formation + Delta-G solvation = 9.119855 kcal Electronic energy + Delta-G solvation = -20636.489792 eV Core-core repulsion = 17645.211719 eV Total energy + Delta-G solvation = -2991.278072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36962 -38.40099 -36.86391 -33.69440 -31.80216 -31.55862 -29.29885 -28.44815 -27.11021 -24.57246 -23.34288 -22.13492 -20.52870 -20.11147 -19.77125 -18.98552 -17.16842 -16.67753 -15.93520 -15.22020 -14.70241 -14.60103 -14.20744 -13.76027 -13.54360 -13.32622 -13.08556 -12.94372 -12.40884 -11.92189 -11.81450 -11.73960 -11.16707 -11.11894 -10.99353 -10.95784 -10.90161 -10.68624 -10.39595 -10.33674 -10.11185 -9.96307 -9.70957 -9.67355 -9.34870 -8.71145 -8.49360 -6.81824 -5.72443 -3.04742 2.79666 3.38648 3.45145 3.47155 3.49502 3.66954 4.39958 4.49810 4.58989 4.75132 5.01372 5.15186 5.30530 5.33675 5.38424 5.46766 5.47491 5.48285 5.60577 5.65830 5.78710 5.80751 5.85001 5.90020 6.03796 6.11316 6.16245 6.22403 6.32424 6.38932 6.50212 6.55430 6.71154 7.09068 7.53816 7.56025 7.79565 7.96385 8.24504 8.61560 9.21965 9.81871 10.47916 11.39638 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.005844 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.895431 B = 4790.108924 C = 5592.440980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.176 3.824 11 C -0.153 4.153 12 C 0.128 3.872 13 H 0.087 0.913 14 N -0.698 5.698 15 C 0.555 3.445 16 O -0.552 6.552 17 C -0.175 4.175 18 C -0.126 4.126 19 C -0.129 4.129 20 H 0.118 0.882 21 C -0.095 4.095 22 C -0.122 4.122 23 C -0.089 4.089 24 C 0.125 3.875 25 H 0.251 0.749 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.403 0.597 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -10.480 -11.159 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.051 3.949 11 C -0.192 4.192 12 C 0.022 3.978 13 H 0.105 0.895 14 N -0.347 5.347 15 C 0.341 3.659 16 O -0.431 6.431 17 C -0.178 4.178 18 C -0.163 4.163 19 C -0.148 4.148 20 H 0.136 0.864 21 C -0.133 4.133 22 C -0.159 4.159 23 C -0.126 4.126 24 C -0.002 4.002 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.237 0.763 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.045 0.955 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.493 -10.809 -10.716 15.229 hybrid contribution 0.131 1.314 -0.012 1.320 sum 0.624 -9.496 -10.728 14.341 Atomic orbital electron populations 1.69957 1.04812 1.24831 1.57598 1.24765 0.95712 0.97550 1.02491 0.86063 0.78768 0.83868 0.77216 1.20566 1.21819 1.21781 1.19103 0.90444 0.82388 1.43136 0.90542 1.44474 1.01454 0.99876 1.87188 1.21158 0.84583 0.87898 1.01223 1.23220 0.95689 1.00086 1.00229 1.22132 0.97395 0.99208 0.79017 0.89518 1.45759 1.44629 1.37305 1.07016 1.19250 0.79130 0.80353 0.87129 1.90650 1.41915 1.38378 1.72160 1.22395 1.10071 0.94029 0.91275 1.23084 0.95034 0.97701 1.00511 1.23332 0.92866 1.00472 0.98082 0.86433 1.21974 1.00761 0.94111 0.96435 1.23022 0.97525 0.96085 0.99281 1.22341 0.97746 0.93292 0.99259 1.21935 0.94837 0.86372 0.97029 0.93875 0.93636 0.93790 0.91611 0.90966 0.76255 0.88155 0.88223 0.91057 0.91251 0.91033 0.91145 0.90821 0.89930 0.95537 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.31 55.49 0.57 -26.09 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.22 -6.19 10.28 -15.06 -0.15 -6.35 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.23 3.39 -170.08 -0.58 -15.81 16 10 C 0.18 4.12 5.36 -3.07 -0.02 4.10 16 11 C -0.15 -2.76 6.53 -24.90 -0.16 -2.92 16 12 C 0.13 2.36 3.37 -65.78 -0.22 2.13 16 13 H 0.09 1.56 7.63 -51.93 -0.40 1.16 16 14 N -0.70 -11.95 5.03 -51.72 -0.26 -12.21 16 15 C 0.56 9.54 7.42 -10.98 -0.08 9.46 16 16 O -0.55 -11.21 16.48 5.56 0.09 -11.12 16 17 C -0.17 -2.36 2.63 -154.54 -0.41 -2.77 16 18 C -0.13 -1.38 9.85 -26.73 -0.26 -1.64 16 19 C -0.13 -1.54 6.55 -89.50 -0.59 -2.13 16 20 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 21 C -0.10 -0.95 6.63 -25.07 -0.17 -1.12 16 22 C -0.12 -1.36 6.96 -23.54 -0.16 -1.53 16 23 C -0.09 -1.11 6.34 -23.88 -0.15 -1.26 16 24 C 0.13 2.74 6.93 -2.53 -0.02 2.72 16 25 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 27 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 28 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.40 6.58 8.11 -40.82 -0.33 6.25 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.20 7.56 -51.93 -0.39 0.81 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -31.27 322.47 -9.34 -40.61 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.51 Total: 4.34 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.49 Total: -1.64 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.27 Total: -54.11 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.27 -9.34 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015342315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.729 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds