Wall clock time and date at job start Mon Mar 30 2020 00:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48503 * 109.46980 * 270.00216 * 3 2 1 5 5 H 1.48501 * 109.46844 * 30.00046 * 3 2 1 6 6 H 1.48496 * 109.47399 * 149.99914 * 3 2 1 7 7 C 1.38822 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99918 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99651 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99756 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.63991 * 323.31075 * 10 9 7 12 12 C 1.55157 * 110.72077 * 86.45395 * 10 9 7 13 13 C 1.54910 * 101.58199 * 154.04084 * 12 10 9 14 14 N 1.47424 * 104.83356 * 322.99178 * 13 12 10 15 15 C 1.34769 * 125.65034 * 204.09106 * 14 13 12 16 16 O 1.21286 * 120.00287 * 180.02562 * 15 14 13 17 17 C 1.50706 * 120.00123 * 0.02613 * 15 14 13 18 18 C 1.52995 * 109.47440 * 180.02562 * 17 15 14 19 19 H 1.09009 * 110.43143 * 304.10199 * 18 17 15 20 20 C 1.51106 * 110.38927 * 66.44995 * 18 17 15 21 21 C 1.30522 * 111.10613 * 135.25078 * 20 18 17 22 22 C 1.51110 * 111.10106 * 0.02562 * 21 20 18 23 23 C 1.54633 * 110.38709 * 181.75542 * 18 17 15 24 24 C 1.47022 * 108.70326 * 24.35299 * 14 13 12 25 25 H 0.97002 * 120.00067 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00042 * 359.97438 * 9 7 2 27 27 H 1.08998 * 111.00142 * 35.96910 * 12 10 9 28 28 H 1.08999 * 111.03692 * 272.13212 * 12 10 9 29 29 H 1.08999 * 110.36810 * 204.14834 * 13 12 10 30 30 H 1.09005 * 110.36364 * 81.82722 * 13 12 10 31 31 H 1.08996 * 109.47245 * 59.99425 * 17 15 14 32 32 H 1.09004 * 109.46848 * 299.99702 * 17 15 14 33 33 H 1.08005 * 124.44451 * 315.27156 * 20 18 17 34 34 H 1.07996 * 124.45308 * 180.02562 * 21 20 18 35 35 H 1.08996 * 110.38650 * 102.37939 * 22 21 20 36 36 H 1.09003 * 110.38174 * 224.75606 * 22 21 20 37 37 H 1.09001 * 111.03499 * 334.58024 * 23 18 17 38 38 H 1.08999 * 111.03641 * 98.52287 * 23 18 17 39 39 H 1.09003 * 109.88553 * 118.12945 * 24 14 13 40 40 H 1.08996 * 109.88557 * 239.29686 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5959 -3.2126 0.6098 12 6 4.3082 -2.9917 -1.4484 13 6 5.5858 -3.8548 -1.2983 14 7 6.4264 -3.1203 -0.3353 15 6 7.7669 -3.2136 -0.2319 16 8 8.3578 -2.5598 0.6014 17 6 8.5317 -4.1302 -1.1517 18 6 10.0245 -4.0496 -0.8265 19 1 10.3723 -3.0183 -0.8882 20 6 10.2950 -4.6150 0.5485 21 6 11.3384 -5.3991 0.5373 22 6 11.9381 -5.4869 -0.8469 23 6 10.8347 -4.9497 -1.7880 24 6 5.5596 -2.2740 0.4977 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3622 -0.0011 27 1 4.4733 -2.1665 -2.1411 28 1 3.4605 -3.6000 -1.7637 29 1 6.0972 -3.9453 -2.2566 30 1 5.3338 -4.8405 -0.9072 31 1 8.3678 -3.8267 -2.1857 32 1 8.1851 -5.1545 -1.0144 33 1 9.7026 -4.3988 1.4253 34 1 11.7227 -5.9171 1.4035 35 1 12.8311 -4.8655 -0.9140 36 1 12.1753 -6.5220 -1.0929 37 1 10.2197 -5.7624 -2.1746 38 1 11.2649 -4.3656 -2.6015 39 1 5.6390 -2.5765 1.5419 40 1 5.8477 -1.2284 0.3896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018478576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:29 Heat of formation + Delta-G solvation = -5.254028 kcal Electronic energy + Delta-G solvation = -19736.043595 eV Core-core repulsion = 16744.142224 eV Total energy + Delta-G solvation = -2991.901371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16771 -38.70095 -37.20209 -34.27840 -32.04102 -31.33535 -29.81328 -29.11801 -28.21095 -25.59819 -23.30477 -22.64439 -20.73819 -20.19503 -19.39836 -18.56280 -17.77726 -16.95059 -16.35515 -15.93418 -15.42043 -15.01083 -14.57457 -14.05954 -13.88363 -13.28578 -13.01787 -12.72822 -12.55221 -12.11613 -12.04209 -12.02644 -11.94752 -11.86371 -11.46594 -11.43928 -11.30467 -10.93610 -10.92321 -10.73160 -10.53506 -10.10927 -9.69506 -9.63257 -9.04026 -9.01016 -8.48212 -7.37593 -5.84533 -3.22003 2.17768 2.74268 3.09247 3.34435 3.38318 3.42764 4.33696 4.42635 4.53229 4.63720 4.72525 4.92269 5.02722 5.10273 5.17530 5.23189 5.29835 5.35816 5.44083 5.46558 5.50748 5.58682 5.63140 5.67920 5.73999 5.84191 5.87254 5.98629 6.08584 6.12145 6.25616 6.42287 6.48254 6.50758 6.76825 6.78390 7.66522 7.89664 8.28146 8.33995 9.10749 9.83344 10.01577 11.33195 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.045308 B = 0.003597 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.843293 B = 7783.031612 C = 8015.669835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.740 5.740 10 C 0.176 3.824 11 H 0.072 0.928 12 C -0.153 4.153 13 C 0.098 3.902 14 N -0.615 5.615 15 C 0.524 3.476 16 O -0.544 6.544 17 C -0.127 4.127 18 C -0.055 4.055 19 H 0.089 0.911 20 C -0.137 4.137 21 C -0.186 4.186 22 C -0.098 4.098 23 C -0.122 4.122 24 C 0.099 3.901 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.387 -12.299 -4.533 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.382 5.382 10 C 0.065 3.935 11 H 0.090 0.910 12 C -0.194 4.194 13 C -0.025 4.025 14 N -0.350 5.350 15 C 0.313 3.687 16 O -0.422 6.422 17 C -0.167 4.167 18 C -0.073 4.073 19 H 0.107 0.893 20 C -0.155 4.155 21 C -0.204 4.204 22 C -0.135 4.135 23 C -0.160 4.160 24 C -0.025 4.025 25 H 0.071 0.929 26 H 0.197 0.803 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.508 -11.994 -4.067 24.103 hybrid contribution 0.393 1.246 0.017 1.307 sum 20.901 -10.748 -4.050 23.849 Atomic orbital electron populations 1.69693 1.05117 1.26016 1.56906 1.24668 0.95228 0.97266 1.01604 0.86575 0.79319 0.84932 0.77875 1.20988 1.21583 1.20216 1.19028 0.80181 0.94847 1.43809 0.88974 1.42709 1.04171 1.01489 1.89873 1.21149 0.88932 0.89918 0.93486 0.91039 1.23513 0.95338 0.99464 1.01127 1.22419 0.92221 0.95785 0.92118 1.48543 1.05583 1.44435 1.36403 1.20344 0.80579 0.83029 0.84787 1.90692 1.67839 1.46187 1.37491 1.21681 0.95129 1.00118 0.99728 1.20837 0.92997 1.00476 0.93006 0.89277 1.23346 0.97771 0.96315 0.98080 1.23233 0.98218 1.00949 0.98036 1.21329 0.98300 1.01081 0.92812 1.22566 0.97005 0.99046 0.97364 1.22265 0.90656 0.95025 0.94533 0.92908 0.80343 0.90718 0.90049 0.91158 0.91441 0.88878 0.88896 0.85638 0.86147 0.90977 0.91435 0.90862 0.90864 0.91443 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 21.83 27.73 -169.99 -4.71 17.12 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.25 -6.77 10.46 -15.05 -0.16 -6.93 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 N -0.74 -16.90 5.06 -51.64 -0.26 -17.16 16 10 C 0.18 3.20 3.57 -66.09 -0.24 2.96 16 11 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 12 C -0.15 -2.33 6.77 -24.58 -0.17 -2.50 16 13 C 0.10 1.17 6.69 -2.53 -0.02 1.15 16 14 N -0.62 -8.89 3.33 -170.51 -0.57 -9.46 16 15 C 0.52 7.54 7.61 -10.99 -0.08 7.46 16 16 O -0.54 -9.72 15.01 5.55 0.08 -9.64 16 17 C -0.13 -1.28 4.12 -27.88 -0.11 -1.40 16 18 C -0.05 -0.56 2.54 -90.72 -0.23 -0.79 16 19 H 0.09 1.05 8.01 -51.92 -0.42 0.63 16 20 C -0.14 -1.55 9.19 -35.69 -0.33 -1.88 16 21 C -0.19 -1.78 10.78 -35.69 -0.38 -2.16 16 22 C -0.10 -0.77 6.81 -26.81 -0.18 -0.96 16 23 C -0.12 -0.95 6.71 -25.00 -0.17 -1.12 16 24 C 0.10 1.66 6.63 -3.06 -0.02 1.64 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.36 8.31 5.39 -40.82 -0.22 8.09 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.79 7.85 -51.93 -0.41 0.38 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.13 1.63 7.31 -52.48 -0.38 1.25 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -31.87 322.56 -8.45 -40.32 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.44 Total: 6.17 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.19 Total: -4.38 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.05 Total: -54.46 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.87 -8.45 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018478576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.069 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds