Wall clock time and date at job start Mon Mar 30 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00327 * 2 1 4 4 H 1.48498 * 109.47158 * 240.00345 * 3 2 1 5 5 H 1.48503 * 109.47052 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47144 * 119.99791 * 3 2 1 7 7 C 1.38808 * 119.99541 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00054 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.47806 * 134.58239 * 359.94712 * 9 7 2 11 11 C 1.53942 * 86.16032 * 204.57998 * 10 9 7 12 12 C 1.47577 * 134.48907 * 180.02562 * 9 7 2 13 13 H 1.08995 * 113.77013 * 269.77324 * 12 9 7 14 14 C 1.52999 * 113.77497 * 41.06837 * 12 9 7 15 15 N 1.46506 * 109.46684 * 283.65345 * 14 12 9 16 16 C 1.34777 * 119.99873 * 180.02562 * 15 14 12 17 17 O 1.21284 * 119.99754 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00137 * 179.97438 * 16 15 14 19 19 C 1.52997 * 119.29811 * 250.22833 * 18 16 15 20 20 C 1.52998 * 60.38073 * 248.69165 * 19 18 16 21 21 H 1.08997 * 119.29892 * 111.30258 * 20 19 18 22 22 C 1.54269 * 118.19593 * 266.38536 * 20 19 18 23 23 C 1.54884 * 104.19751 * 87.79121 * 22 20 19 24 24 C 1.54269 * 117.41074 * 44.56860 * 18 16 15 25 25 H 0.97001 * 119.99099 * 359.97438 * 1 2 3 26 26 H 1.09000 * 113.66877 * 90.27320 * 10 9 7 27 27 H 1.09001 * 113.83185 * 318.90838 * 10 9 7 28 28 H 1.09002 * 113.74342 * 222.13706 * 11 10 9 29 29 H 1.09000 * 113.84088 * 90.84352 * 11 10 9 30 30 H 1.09000 * 109.47486 * 163.65280 * 14 12 9 31 31 H 1.09001 * 109.47362 * 43.64557 * 14 12 9 32 32 H 0.96995 * 120.00050 * 359.72237 * 15 14 12 33 33 H 1.09005 * 117.46200 * 356.29382 * 19 18 16 34 34 H 1.09006 * 117.46004 * 141.11466 * 19 18 16 35 35 H 1.09004 * 110.48024 * 206.46672 * 22 20 19 36 36 H 1.08993 * 110.48978 * 328.97238 * 22 20 19 37 37 H 1.08997 * 110.75998 * 80.36374 * 23 22 20 38 38 H 1.08998 * 110.75867 * 203.55971 * 23 22 20 39 39 H 1.08998 * 110.48719 * 235.04928 * 24 18 16 40 40 H 1.09001 * 110.48741 * 357.69306 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1050 -2.7602 0.0010 11 6 0.3466 -4.0862 0.6394 12 6 1.7200 -3.8102 0.0015 13 1 1.8345 -4.2350 -0.9957 14 6 2.9014 -4.1218 0.9224 15 7 4.1445 -3.6719 0.2911 16 6 5.3222 -3.8444 0.9234 17 8 5.3528 -4.3716 2.0152 18 6 6.6010 -3.3821 0.2738 19 6 7.5993 -4.4224 -0.2381 20 6 7.9615 -3.5576 0.9710 21 1 8.0387 -4.0212 1.9544 22 6 8.7535 -2.2567 0.7256 23 6 7.6613 -1.1925 0.4543 24 6 6.5988 -1.9875 -0.3858 25 1 -0.4849 0.8401 0.0004 26 1 -0.5277 -2.8747 -0.9971 27 1 -0.7202 -2.1439 0.6568 28 1 -0.1579 -4.9630 0.2335 29 1 0.3579 -4.0691 1.7292 30 1 2.9514 -5.1964 1.0983 31 1 2.7682 -3.6039 1.8722 32 1 4.1205 -3.2539 -0.5839 33 1 7.3699 -5.4721 -0.0547 34 1 8.1087 -4.2102 -1.1782 35 1 9.3338 -1.9910 1.6092 36 1 9.4067 -2.3652 -0.1401 37 1 7.2282 -0.8364 1.3889 38 1 8.0664 -0.3617 -0.1234 39 1 6.9141 -2.0574 -1.4268 40 1 5.6103 -1.5337 -0.3152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038529019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:28 Heat of formation + Delta-G solvation = 15.932515 kcal Electronic energy + Delta-G solvation = -20501.012561 eV Core-core repulsion = 17510.029907 eV Total energy + Delta-G solvation = -2990.982653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50638 -39.91411 -38.87738 -35.53979 -34.20723 -32.48946 -30.30145 -29.79157 -28.58189 -25.29884 -24.75659 -23.50287 -22.81019 -21.29118 -21.01217 -20.15628 -18.67411 -18.01639 -17.10529 -17.07501 -16.31123 -16.18527 -15.72599 -15.47304 -15.08676 -14.64984 -14.38515 -14.10987 -13.90584 -13.60232 -13.29443 -12.92611 -12.81269 -12.71290 -12.60664 -12.33739 -12.09011 -12.01620 -11.92608 -11.83761 -11.54034 -11.39658 -11.28046 -10.82969 -10.68249 -10.63226 -10.03157 -8.88689 -7.86657 -5.18198 1.42680 1.45613 1.50729 1.51226 2.19406 2.47594 2.63620 3.31964 3.38010 3.47690 3.62481 3.73597 3.90987 3.99914 4.11800 4.24458 4.32397 4.39732 4.47008 4.57509 4.61546 4.68670 4.75005 4.79736 4.85702 4.95405 4.98366 5.04512 5.08599 5.12342 5.17244 5.27560 5.33756 5.43725 5.45473 5.61130 5.73585 5.97721 6.56211 6.95371 7.22875 7.65529 8.60425 9.30277 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.006805 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.419563 B = 4113.651600 C = 5439.571001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.285 1.285 7 C -0.213 4.213 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.131 4.131 12 C 0.133 3.867 13 H 0.072 0.928 14 C 0.132 3.868 15 N -0.706 5.706 16 C 0.546 3.454 17 O -0.594 6.594 18 C -0.197 4.197 19 C -0.100 4.100 20 C -0.131 4.131 21 H 0.101 0.899 22 C -0.086 4.086 23 C -0.125 4.125 24 C -0.087 4.087 25 H 0.245 0.755 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.408 0.592 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.811 -8.104 -3.459 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.341 4.341 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.025 3.975 11 C -0.169 4.169 12 C 0.027 3.973 13 H 0.089 0.911 14 C 0.007 3.993 15 N -0.355 5.355 16 C 0.334 3.666 17 O -0.476 6.476 18 C -0.201 4.201 19 C -0.137 4.137 20 C -0.150 4.150 21 H 0.119 0.881 22 C -0.123 4.123 23 C -0.163 4.163 24 C -0.125 4.125 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.243 0.757 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.828 -8.124 -2.690 17.120 hybrid contribution -0.427 1.393 -0.075 1.459 sum 14.401 -6.731 -2.765 16.135 Atomic orbital electron populations 1.69997 1.06275 1.25234 1.58955 1.25506 0.96412 1.00475 1.03918 0.85355 0.77332 0.79772 0.78211 1.19649 1.22447 1.21119 1.19256 0.90620 0.83056 1.41192 0.89827 1.46439 1.03253 0.99900 1.86001 1.22207 0.87085 0.91680 0.96512 1.23555 0.95082 0.97935 1.00376 1.22658 0.93166 0.84785 0.96720 0.91106 1.21552 0.82972 0.98823 0.95970 1.45887 1.05909 1.61173 1.22541 1.19976 0.85013 0.77243 0.84332 1.90621 1.87904 1.46661 1.22374 1.22400 0.89140 1.00043 1.08471 1.23220 0.96590 0.95155 0.98758 1.23466 0.93592 0.99957 0.98009 0.88110 1.21971 0.96548 0.90583 1.03179 1.23060 0.95406 0.98434 0.99353 1.22362 0.99649 0.90377 1.00113 0.94600 0.95793 0.94343 0.88637 0.90547 0.90373 0.94369 0.75691 0.88296 0.85078 0.90247 0.88571 0.93338 0.89117 0.88233 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.66 11.40 21.65 0.25 -57.42 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.96 45.74 29.55 68.60 2.03 47.77 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.21 -11.46 10.51 84.03 0.88 -10.58 16 8 H 0.08 4.28 7.50 -2.91 -0.02 4.26 16 9 N -0.63 -30.69 3.59 -691.02 -2.48 -33.16 16 10 C 0.15 6.95 7.52 86.44 0.65 7.60 16 11 C -0.13 -4.58 7.86 31.24 0.25 -4.34 16 12 C 0.13 4.95 4.32 45.09 0.20 5.14 16 13 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.13 4.80 5.54 86.38 0.48 5.28 16 15 N -0.71 -24.38 5.17 -463.05 -2.39 -26.78 16 16 C 0.55 19.21 7.42 87.66 0.65 19.86 16 17 O -0.59 -25.16 16.79 -3.04 -0.05 -25.21 16 18 C -0.20 -5.22 2.63 -52.20 -0.14 -5.36 16 19 C -0.10 -1.95 9.85 30.59 0.30 -1.65 16 20 C -0.13 -2.99 6.55 -10.07 -0.07 -3.05 16 21 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 22 C -0.09 -1.51 6.63 31.67 0.21 -1.30 16 23 C -0.13 -2.68 6.96 32.66 0.23 -2.45 16 24 C -0.09 -2.11 6.35 32.45 0.21 -1.90 16 25 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 2.03 7.17 -2.39 -0.02 2.01 16 28 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.08 2.70 8.10 -2.39 -0.02 2.68 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.41 13.32 7.83 -92.71 -0.73 12.59 16 33 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.59 7.57 -2.39 -0.02 1.57 16 Total: -1.00 -70.16 327.78 1.96 -68.20 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.29 Total: 22.87 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 4.31 Total: 3.73 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -4.62 Total: -117.36 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.16 1.96 -68.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038529019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.137 kcal (2) G-P(sol) polarization free energy of solvation -70.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds