Wall clock time and date at job start Mon Mar 30 2020 00:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00155 * 2 1 4 4 H 1.48508 * 109.47028 * 239.99651 * 3 2 1 5 5 H 1.48498 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47419 * 120.00128 * 3 2 1 7 7 C 1.38816 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99762 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00241 * 359.97438 * 7 2 1 10 10 C 1.47933 * 134.63096 * 359.91852 * 9 7 2 11 11 C 1.53943 * 86.11862 * 204.69541 * 10 9 7 12 12 C 1.47582 * 134.49149 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.77116 * 269.66565 * 12 9 7 14 14 C 1.52997 * 113.76727 * 40.95200 * 12 9 7 15 15 N 1.46501 * 109.47351 * 283.64944 * 14 12 9 16 16 C 1.34773 * 120.00301 * 180.02562 * 15 14 12 17 17 O 1.21282 * 119.99676 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00044 * 180.02562 * 16 15 14 19 19 H 1.08992 * 115.55714 * 34.26541 * 18 16 15 20 20 C 1.53126 * 117.51127 * 248.45967 * 18 16 15 21 21 C 1.52463 * 59.85757 * 252.55278 * 20 18 16 22 22 C 1.53254 * 128.58049 * 117.60457 * 21 20 18 23 23 C 1.53880 * 86.88209 * 114.94314 * 22 21 20 24 24 C 1.53257 * 128.58468 * 242.39783 * 21 20 18 25 25 H 0.97000 * 119.99861 * 0.02562 * 1 2 3 26 26 H 1.08998 * 113.76908 * 90.39440 * 10 9 7 27 27 H 1.08993 * 113.86677 * 319.01615 * 10 9 7 28 28 H 1.09000 * 113.74388 * 222.04767 * 11 10 9 29 29 H 1.09003 * 113.73860 * 90.73967 * 11 10 9 30 30 H 1.09001 * 109.47817 * 43.65407 * 14 12 9 31 31 H 1.09007 * 109.46898 * 163.65296 * 14 12 9 32 32 H 0.97000 * 119.99913 * 0.02562 * 15 14 12 33 33 H 1.09000 * 117.51560 * 0.02562 * 20 18 16 34 34 H 1.09004 * 117.50759 * 145.10215 * 20 18 16 35 35 H 1.09006 * 113.64567 * 229.44097 * 22 21 20 36 36 H 1.08998 * 113.64719 * 0.44038 * 22 21 20 37 37 H 1.08997 * 113.59125 * 270.38953 * 23 22 21 38 38 H 1.09008 * 113.66305 * 139.58238 * 23 22 21 39 39 H 1.09005 * 113.64304 * 359.55963 * 24 21 20 40 40 H 1.08999 * 113.64353 * 130.47119 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1059 -2.7617 0.0039 11 6 0.3484 -4.0856 0.6448 12 6 1.7200 -3.8102 0.0019 13 1 1.8311 -4.2356 -0.9955 14 6 2.9046 -4.1212 0.9189 15 7 4.1456 -3.6718 0.2831 16 6 5.3254 -3.8437 0.9114 17 8 5.3598 -4.3710 2.0031 18 6 6.6018 -3.3809 0.2576 19 1 6.5199 -2.4773 -0.3465 20 6 7.5893 -4.4556 -0.2058 21 6 7.9040 -3.6036 1.0187 22 6 8.0974 -4.0525 2.4712 23 6 9.5559 -3.5815 2.3343 24 6 9.0662 -2.6273 1.2308 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5309 -2.8793 -0.9929 27 1 -0.7216 -2.1451 0.6586 28 1 -0.1563 -4.9639 0.2424 29 1 0.3618 -4.0637 1.7345 30 1 2.7747 -3.6029 1.8689 31 1 2.9552 -5.1957 1.0952 32 1 4.1181 -3.2504 -0.5902 33 1 7.3153 -5.4971 -0.0381 34 1 8.1570 -4.2591 -1.1154 35 1 7.5163 -3.4732 3.1889 36 1 7.9969 -5.1285 2.6134 37 1 10.2323 -4.3559 1.9728 38 1 9.9347 -3.0682 3.2183 39 1 9.7424 -2.5608 0.3784 40 1 8.7547 -1.6508 1.6017 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038763762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:33 Heat of formation + Delta-G solvation = 62.439649 kcal Electronic energy + Delta-G solvation = -20058.824074 eV Core-core repulsion = 17069.858121 eV Total energy + Delta-G solvation = -2988.965953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17192 -38.53058 -37.61879 -33.93729 -33.61544 -32.17339 -28.15256 -27.73741 -25.68170 -23.97355 -23.36422 -23.09667 -21.75143 -19.98746 -19.09552 -18.34801 -17.10998 -16.36592 -15.88024 -15.31331 -15.22535 -14.85531 -14.53327 -14.13876 -13.81991 -13.39179 -12.94997 -12.60511 -12.36502 -12.03813 -11.83658 -11.58388 -11.46142 -11.40555 -11.10113 -11.00182 -10.73765 -10.56753 -10.35837 -10.09224 -10.00161 -9.77024 -9.75209 -9.56042 -9.20863 -8.79952 -8.51143 -6.89537 -5.76514 -3.08716 2.81896 3.37489 3.42212 3.43392 3.51438 3.80310 4.40010 4.45697 4.60889 4.77423 4.78945 4.87515 5.11285 5.31133 5.32387 5.41066 5.55103 5.60726 5.62801 5.67662 5.74891 5.79749 5.83134 5.92474 5.95407 6.10591 6.13512 6.28998 6.32989 6.39841 6.41094 6.62398 6.73607 6.94505 7.24118 7.40829 7.58240 7.97475 7.98149 8.64853 9.03736 9.71002 10.59725 11.40401 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019139 B = 0.005352 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.623244 B = 5230.179870 C = 6310.589958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.125 3.875 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.548 6.548 18 C -0.177 4.177 19 H 0.122 0.878 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.080 4.080 23 C -0.142 4.142 24 C -0.099 4.099 25 H 0.253 0.747 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.403 0.597 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.407 -8.788 -0.320 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.360 5.360 16 C 0.326 3.674 17 O -0.427 6.427 18 C -0.198 4.198 19 H 0.140 0.860 20 C -0.160 4.160 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.180 4.180 24 C -0.137 4.137 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.413 -8.795 0.470 16.046 hybrid contribution 0.279 1.325 -0.745 1.545 sum 13.692 -7.470 -0.274 15.599 Atomic orbital electron populations 1.69805 1.04957 1.25344 1.56609 1.24750 0.95612 0.97373 1.02626 0.86284 0.78573 0.83549 0.77867 1.21274 1.21547 1.21153 1.18892 0.90084 0.81928 1.43726 0.90440 1.46125 1.02243 0.98532 1.86011 1.22251 0.87920 0.89592 0.96884 1.23764 0.96218 0.98930 1.00548 1.22509 0.92364 0.87686 0.95643 0.93363 1.21725 0.82616 0.98102 0.97547 1.45914 1.06134 1.61340 1.22608 1.19543 0.84106 0.78599 0.85192 1.90644 1.87198 1.44333 1.20505 1.22193 0.89863 1.02255 1.05517 0.86005 1.22758 1.00023 0.96082 0.97171 1.22250 0.94569 1.01238 0.94774 1.22297 0.94589 1.01370 0.93511 1.22811 0.97137 0.99246 0.98767 1.22505 0.95094 0.97253 0.98818 0.93657 0.95537 0.90869 0.92805 0.90520 0.91155 0.92376 0.76298 0.88225 0.87864 0.89393 0.91420 0.90334 0.91390 0.91408 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.04 11.41 55.49 0.63 -26.41 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.22 -5.89 10.51 -15.06 -0.16 -6.04 16 8 H 0.08 2.00 7.49 -52.49 -0.39 1.61 16 9 N -0.60 -14.74 3.59 -169.62 -0.61 -15.34 16 10 C 0.16 3.65 7.53 -2.78 -0.02 3.63 16 11 C -0.16 -2.86 7.86 -25.78 -0.20 -3.07 16 12 C 0.13 2.43 4.32 -66.85 -0.29 2.14 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C 0.12 2.30 5.54 -4.04 -0.02 2.28 16 15 N -0.71 -12.31 5.35 -60.29 -0.32 -12.63 16 16 C 0.54 9.31 7.61 -10.99 -0.08 9.22 16 17 O -0.55 -10.95 15.14 5.56 0.08 -10.87 16 18 C -0.18 -2.44 6.19 -91.98 -0.57 -3.01 16 19 H 0.12 1.56 8.14 -51.93 -0.42 1.13 16 20 C -0.12 -1.38 10.24 -26.94 -0.28 -1.66 16 21 C -0.13 -1.59 2.88 -154.79 -0.45 -2.04 16 22 C -0.08 -1.03 6.47 -26.14 -0.17 -1.20 16 23 C -0.14 -1.41 8.08 -25.81 -0.21 -1.62 16 24 C -0.10 -1.04 8.10 -26.14 -0.21 -1.25 16 25 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.87 7.18 -51.93 -0.37 1.50 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.40 6.65 8.35 -40.82 -0.34 6.31 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -31.32 330.51 -9.59 -40.90 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.58 Total: 5.22 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.75 Total: -2.89 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.30 Total: -54.38 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.32 -9.59 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038763762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.341 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds