Wall clock time and date at job start Mon Mar 30 2020 00:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99644 * 2 1 4 4 H 1.48498 * 109.47444 * 274.98956 * 3 2 1 5 5 H 1.48497 * 109.47142 * 34.99262 * 3 2 1 6 6 H 1.48500 * 109.46546 * 154.98935 * 3 2 1 7 7 C 1.38801 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99672 * 174.89469 * 7 2 1 9 9 N 1.36938 * 120.00353 * 354.60856 * 7 2 1 10 10 C 1.47064 * 136.05711 * 6.43521 * 9 7 2 11 11 C 1.53493 * 87.98671 * 152.83582 * 10 9 7 12 12 C 1.47068 * 136.05703 * 186.05662 * 9 7 2 13 13 H 1.08998 * 113.46692 * 92.38504 * 12 9 7 14 14 C 1.52997 * 113.47186 * 321.94245 * 12 9 7 15 15 N 1.46498 * 109.47124 * 74.50434 * 14 12 9 16 16 C 1.34770 * 120.00210 * 180.02562 * 15 14 12 17 17 O 1.21284 * 119.99900 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00513 * 180.02562 * 16 15 14 19 19 H 1.09002 * 115.55601 * 34.41047 * 18 16 15 20 20 C 1.53126 * 117.51276 * 248.68210 * 18 16 15 21 21 C 1.52464 * 117.51675 * 180.14965 * 18 16 15 22 22 C 1.53249 * 128.58312 * 349.84931 * 21 18 16 23 23 C 1.53893 * 86.88336 * 194.88840 * 22 21 18 24 24 C 1.53254 * 128.58237 * 225.04528 * 21 18 16 25 25 H 0.97000 * 119.99989 * 359.97438 * 1 2 3 26 26 H 1.08997 * 113.46601 * 267.62238 * 10 9 7 27 27 H 1.09009 * 113.46588 * 38.00355 * 10 9 7 28 28 H 1.09007 * 114.20128 * 139.65140 * 11 10 9 29 29 H 1.09000 * 114.21196 * 272.28408 * 11 10 9 30 30 H 1.08996 * 109.47082 * 194.50626 * 14 12 9 31 31 H 1.09009 * 109.46889 * 314.50744 * 14 12 9 32 32 H 0.97003 * 120.00291 * 0.02562 * 15 14 12 33 33 H 1.08992 * 117.51550 * 359.97438 * 20 18 16 34 34 H 1.09003 * 117.51049 * 145.10163 * 20 18 16 35 35 H 1.09004 * 113.64833 * 309.37960 * 22 21 18 36 36 H 1.09001 * 113.64861 * 80.39155 * 22 21 18 37 37 H 1.09004 * 113.58318 * 270.39384 * 23 22 21 38 38 H 1.08993 * 113.66340 * 139.58156 * 23 22 21 39 39 H 1.08998 * 113.64897 * 279.61067 * 24 21 18 40 40 H 1.09000 * 113.64674 * 50.53233 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1075 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2038 -0.0838 9 7 1.3302 -2.3854 0.1104 10 6 -0.0814 -2.7977 0.1301 11 6 0.3640 -4.1569 -0.4269 12 6 1.6900 -3.8040 0.2554 13 1 1.7456 -4.1338 1.2928 14 6 2.9193 -4.2075 -0.5612 15 7 4.1268 -3.6860 0.0840 16 6 5.3367 -3.9189 -0.4619 17 8 5.4260 -4.5608 -1.4871 18 6 6.5789 -3.3830 0.2020 19 1 6.5551 -3.3553 1.2914 20 6 7.3396 -2.2657 -0.5175 21 6 7.9174 -3.6772 -0.4660 22 6 8.2167 -4.6310 -1.6276 23 6 9.7008 -4.5009 -1.2416 24 6 9.2238 -4.1521 0.1794 25 1 -0.4850 0.8400 0.0004 26 1 -0.5023 -2.8567 1.1338 27 1 -0.7089 -2.2304 -0.5574 28 1 -0.1531 -5.0106 0.0113 29 1 0.4184 -4.1981 -1.5148 30 1 2.9777 -5.2944 -0.6169 31 1 2.8383 -3.7958 -1.5673 32 1 4.0555 -3.1729 0.9042 33 1 6.9417 -1.9189 -1.4711 34 1 7.8168 -1.5037 0.0987 35 1 7.8142 -5.6338 -1.4847 36 1 7.9816 -4.2144 -2.6070 37 1 10.2117 -3.6795 -1.7441 38 1 10.2516 -5.4397 -1.2987 39 1 9.7960 -3.3516 0.6484 40 1 9.1013 -5.0207 0.8264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038763764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:36 Heat of formation + Delta-G solvation = 65.434693 kcal Electronic energy + Delta-G solvation = -20087.013488 eV Core-core repulsion = 17098.177410 eV Total energy + Delta-G solvation = -2988.836078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16057 -38.64566 -37.74199 -33.93718 -33.59004 -32.22392 -28.18046 -27.74897 -25.69379 -23.91343 -23.47940 -23.08291 -21.64258 -19.97964 -19.19296 -18.34075 -17.08901 -16.40842 -15.86989 -15.26610 -15.23469 -14.87659 -14.41928 -14.31597 -13.78424 -13.29500 -13.01821 -12.57957 -12.33856 -12.07593 -11.82048 -11.57559 -11.55657 -11.44410 -11.08918 -10.98127 -10.81645 -10.55591 -10.35514 -10.06821 -9.99492 -9.87178 -9.74592 -9.50127 -9.10954 -8.82721 -8.49963 -6.90188 -5.79782 -3.11344 2.84164 3.36484 3.41220 3.43660 3.49545 3.85805 4.40518 4.46141 4.60080 4.77877 4.81753 4.88395 5.17340 5.29049 5.32429 5.39351 5.55992 5.56563 5.65507 5.71921 5.75717 5.76773 5.81969 5.91409 6.02547 6.11693 6.15139 6.28698 6.32303 6.37236 6.40766 6.59223 6.73267 6.94970 7.22536 7.37402 7.56446 7.95370 7.98818 8.65407 9.01348 9.68514 10.62208 11.38019 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.005306 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.518049 B = 5275.703295 C = 6391.072394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.214 4.214 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.162 4.162 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.123 3.877 15 N -0.711 5.711 16 C 0.539 3.461 17 O -0.549 6.549 18 C -0.176 4.176 19 H 0.120 0.880 20 C -0.121 4.121 21 C -0.129 4.129 22 C -0.081 4.081 23 C -0.142 4.142 24 C -0.099 4.099 25 H 0.253 0.747 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.403 0.597 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 -8.538 1.505 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.342 4.342 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.201 4.201 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.002 4.002 15 N -0.360 5.360 16 C 0.325 3.675 17 O -0.427 6.427 18 C -0.198 4.198 19 H 0.138 0.862 20 C -0.158 4.158 21 C -0.130 4.130 22 C -0.118 4.118 23 C -0.180 4.180 24 C -0.136 4.136 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.238 0.762 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.429 -8.619 0.753 15.975 hybrid contribution 0.193 1.352 0.698 1.534 sum 13.622 -7.267 1.451 15.507 Atomic orbital electron populations 1.69852 1.05029 1.25298 1.56162 1.24808 0.95626 0.97427 1.02463 0.86193 0.78725 0.83873 0.77569 1.21643 1.21645 1.20600 1.18864 0.90594 0.81411 1.43286 0.90093 1.45637 1.02542 0.99956 1.84591 1.21977 0.88653 0.89068 0.97460 1.23628 0.97092 0.98964 1.00438 1.22359 0.91984 0.87593 0.96134 0.93482 1.21782 0.83429 0.97234 0.97756 1.45923 1.05747 1.55391 1.28943 1.19560 0.83871 0.79723 0.84332 1.90643 1.86937 1.40898 1.24268 1.22159 0.91781 1.06116 0.99696 0.86242 1.22803 1.00610 0.90280 1.02143 1.22278 0.92155 0.98426 1.00108 1.22294 0.93759 0.98902 0.96834 1.22814 0.97009 1.01476 0.96663 1.22495 0.93750 1.00702 0.96652 0.93690 0.95591 0.91370 0.92338 0.90269 0.92423 0.91284 0.76222 0.87976 0.87760 0.89539 0.91339 0.90271 0.91449 0.91407 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 11.62 55.49 0.64 -26.26 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.86 29.56 -169.99 -5.02 16.84 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.21 -5.74 10.54 -15.06 -0.16 -5.90 16 8 H 0.08 2.09 7.60 -52.48 -0.40 1.69 16 9 N -0.60 -14.67 3.65 -177.16 -0.65 -15.32 16 10 C 0.15 3.53 7.32 -8.51 -0.06 3.47 16 11 C -0.16 -2.97 8.01 -26.35 -0.21 -3.18 16 12 C 0.13 2.46 4.10 -72.53 -0.30 2.16 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 2.26 5.51 -4.04 -0.02 2.23 16 15 N -0.71 -12.36 5.33 -60.30 -0.32 -12.68 16 16 C 0.54 9.32 7.61 -10.99 -0.08 9.23 16 17 O -0.55 -10.96 15.14 5.55 0.08 -10.87 16 18 C -0.18 -2.44 6.19 -91.98 -0.57 -3.01 16 19 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 20 C -0.12 -1.55 10.24 -26.87 -0.28 -1.83 16 21 C -0.13 -1.61 2.88 -154.73 -0.45 -2.06 16 22 C -0.08 -1.02 6.47 -26.14 -0.17 -1.19 16 23 C -0.14 -1.38 8.08 -25.80 -0.21 -1.59 16 24 C -0.10 -0.97 8.10 -26.13 -0.21 -1.18 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.74 7.30 -51.92 -0.38 1.36 16 28 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 32 H 0.40 6.74 8.47 -40.82 -0.35 6.40 16 33 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -31.14 330.88 -9.68 -40.83 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.59 Total: 5.58 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.81 Total: -3.10 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.32 Total: -54.26 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.14 -9.68 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038763764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.262 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds