Wall clock time and date at job start Mon Mar 30 2020 00:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99644 * 2 1 4 4 H 1.48498 * 109.47444 * 274.98956 * 3 2 1 5 5 H 1.48497 * 109.47142 * 34.99262 * 3 2 1 6 6 H 1.48500 * 109.46546 * 154.98935 * 3 2 1 7 7 C 1.38801 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99672 * 174.89469 * 7 2 1 9 9 N 1.36938 * 120.00353 * 354.60856 * 7 2 1 10 10 C 1.47064 * 136.05711 * 6.43521 * 9 7 2 11 11 C 1.53493 * 87.98671 * 152.83582 * 10 9 7 12 12 C 1.47068 * 136.05703 * 186.05662 * 9 7 2 13 13 H 1.08998 * 113.46692 * 92.38504 * 12 9 7 14 14 C 1.52997 * 113.47186 * 321.94245 * 12 9 7 15 15 N 1.46498 * 109.47124 * 74.50434 * 14 12 9 16 16 C 1.34770 * 120.00210 * 180.02562 * 15 14 12 17 17 O 1.21284 * 119.99900 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00513 * 180.02562 * 16 15 14 19 19 H 1.09002 * 115.55601 * 34.41047 * 18 16 15 20 20 C 1.53126 * 117.51276 * 248.68210 * 18 16 15 21 21 C 1.52464 * 117.51675 * 180.14965 * 18 16 15 22 22 C 1.53249 * 128.58312 * 349.84931 * 21 18 16 23 23 C 1.53893 * 86.88336 * 194.88840 * 22 21 18 24 24 C 1.53254 * 128.58237 * 225.04528 * 21 18 16 25 25 H 0.97000 * 119.99989 * 359.97438 * 1 2 3 26 26 H 1.08997 * 113.46601 * 267.62238 * 10 9 7 27 27 H 1.09009 * 113.46588 * 38.00355 * 10 9 7 28 28 H 1.09007 * 114.20128 * 139.65140 * 11 10 9 29 29 H 1.09000 * 114.21196 * 272.28408 * 11 10 9 30 30 H 1.08996 * 109.47082 * 194.50626 * 14 12 9 31 31 H 1.09009 * 109.46889 * 314.50744 * 14 12 9 32 32 H 0.97003 * 120.00291 * 0.02562 * 15 14 12 33 33 H 1.08992 * 117.51550 * 359.97438 * 20 18 16 34 34 H 1.09003 * 117.51049 * 145.10163 * 20 18 16 35 35 H 1.09004 * 113.64833 * 309.37960 * 22 21 18 36 36 H 1.09001 * 113.64861 * 80.39155 * 22 21 18 37 37 H 1.09004 * 113.58318 * 270.39384 * 23 22 21 38 38 H 1.08993 * 113.66340 * 139.58156 * 23 22 21 39 39 H 1.08998 * 113.64897 * 279.61067 * 24 21 18 40 40 H 1.09000 * 113.64674 * 50.53233 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1075 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2038 -0.0838 9 7 1.3302 -2.3854 0.1104 10 6 -0.0814 -2.7977 0.1301 11 6 0.3640 -4.1569 -0.4269 12 6 1.6900 -3.8040 0.2554 13 1 1.7456 -4.1338 1.2928 14 6 2.9193 -4.2075 -0.5612 15 7 4.1268 -3.6860 0.0840 16 6 5.3367 -3.9189 -0.4619 17 8 5.4260 -4.5608 -1.4871 18 6 6.5789 -3.3830 0.2020 19 1 6.5551 -3.3553 1.2914 20 6 7.3396 -2.2657 -0.5175 21 6 7.9174 -3.6772 -0.4660 22 6 8.2167 -4.6310 -1.6276 23 6 9.7008 -4.5009 -1.2416 24 6 9.2238 -4.1521 0.1794 25 1 -0.4850 0.8400 0.0004 26 1 -0.5023 -2.8567 1.1338 27 1 -0.7089 -2.2304 -0.5574 28 1 -0.1531 -5.0106 0.0113 29 1 0.4184 -4.1981 -1.5148 30 1 2.9777 -5.2944 -0.6169 31 1 2.8383 -3.7958 -1.5673 32 1 4.0555 -3.1729 0.9042 33 1 6.9417 -1.9189 -1.4711 34 1 7.8168 -1.5037 0.0987 35 1 7.8142 -5.6338 -1.4847 36 1 7.9816 -4.2144 -2.6070 37 1 10.2117 -3.6795 -1.7441 38 1 10.2516 -5.4397 -1.2987 39 1 9.7960 -3.3516 0.6484 40 1 9.1013 -5.0207 0.8264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038763764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:35 Heat of formation + Delta-G solvation = 46.306621 kcal Electronic energy + Delta-G solvation = -20087.842944 eV Core-core repulsion = 17098.177410 eV Total energy + Delta-G solvation = -2989.665533 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33551 -40.13045 -39.11204 -35.43571 -34.59368 -34.22679 -30.01218 -29.38558 -26.56489 -25.40266 -25.21976 -23.94099 -23.15894 -21.39568 -20.83572 -19.36005 -18.67239 -17.92077 -17.14979 -17.08959 -16.21525 -16.08328 -15.86887 -15.73304 -15.54003 -14.81372 -14.68177 -13.72837 -13.63745 -13.39951 -13.20201 -12.97671 -12.92231 -12.73873 -12.61175 -12.44314 -12.30977 -12.26885 -11.86178 -11.67055 -11.31385 -11.12624 -11.00538 -10.85349 -10.79453 -10.51082 -9.97664 -8.88576 -7.88830 -5.19826 1.44435 1.45171 1.53805 1.54530 2.20199 2.47754 2.79943 3.31979 3.39443 3.50907 3.69193 3.80381 3.90235 3.91619 3.98192 4.07990 4.20394 4.33254 4.51561 4.62786 4.63262 4.69199 4.77909 4.86207 4.88139 4.90662 5.00632 5.04055 5.09361 5.10598 5.17877 5.32972 5.40526 5.49440 5.52797 5.58357 5.72542 5.95902 6.61514 6.93552 7.29006 7.63903 8.64214 9.29528 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.005306 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.518049 B = 5275.703295 C = 6391.072394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.208 4.208 8 H 0.087 0.913 9 N -0.629 5.629 10 C 0.146 3.854 11 C -0.136 4.136 12 C 0.134 3.866 13 H 0.069 0.931 14 C 0.132 3.868 15 N -0.710 5.710 16 C 0.534 3.466 17 O -0.582 6.582 18 C -0.187 4.187 19 H 0.144 0.856 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.130 4.130 24 C -0.087 4.087 25 H 0.245 0.755 26 H 0.023 0.977 27 H 0.032 0.968 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.408 0.592 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.655 -9.398 2.777 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.795 3.205 4 H -0.223 1.223 5 H -0.223 1.223 6 H -0.186 1.186 7 C -0.336 4.336 8 H 0.104 0.896 9 N -0.355 5.355 10 C 0.020 3.980 11 C -0.174 4.174 12 C 0.027 3.973 13 H 0.086 0.914 14 C 0.007 3.993 15 N -0.360 5.360 16 C 0.322 3.678 17 O -0.463 6.463 18 C -0.208 4.208 19 H 0.161 0.839 20 C -0.158 4.158 21 C -0.132 4.132 22 C -0.131 4.131 23 C -0.167 4.167 24 C -0.124 4.124 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.243 0.757 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.750 -9.510 2.042 18.512 hybrid contribution -0.541 1.524 0.245 1.636 sum 15.209 -7.986 2.288 17.330 Atomic orbital electron populations 1.70032 1.06421 1.25273 1.58570 1.25571 0.96416 1.00595 1.03699 0.85232 0.78276 0.79993 0.76969 1.22254 1.22291 1.18646 1.19200 0.91025 0.82509 1.40875 0.89559 1.45955 1.03573 1.01309 1.84711 1.21990 0.87767 0.91420 0.96798 1.23452 0.95921 0.97646 1.00421 1.22497 0.92900 0.84582 0.97297 0.91359 1.21560 0.83700 0.98077 0.95957 1.45935 1.05639 1.55405 1.29005 1.20198 0.84715 0.79011 0.83911 1.90626 1.87452 1.42395 1.25799 1.22212 0.90644 1.07145 1.00763 0.83855 1.22871 1.00370 0.91018 1.01494 1.22531 0.92529 0.97875 1.00254 1.22332 0.96549 0.98159 0.96081 1.22786 0.94870 1.02628 0.96439 1.22512 0.91718 1.01456 0.96710 0.94574 0.95871 0.94993 0.88171 0.90355 0.90560 0.94368 0.75714 0.90030 0.85103 0.90960 0.93417 0.89407 0.89924 0.89490 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.53 11.62 21.65 0.25 -57.28 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 45.39 29.56 68.60 2.03 47.41 16 4 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.21 -11.15 10.54 84.03 0.89 -10.26 16 8 H 0.09 4.42 7.60 -2.91 -0.02 4.39 16 9 N -0.63 -30.59 3.65 -714.41 -2.61 -33.20 16 10 C 0.15 6.72 7.32 83.18 0.61 7.33 16 11 C -0.14 -4.71 8.01 30.84 0.25 -4.46 16 12 C 0.13 4.94 4.10 41.70 0.17 5.12 16 13 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 14 C 0.13 4.71 5.51 86.38 0.48 5.19 16 15 N -0.71 -23.89 5.33 -463.07 -2.47 -26.36 16 16 C 0.53 18.05 7.61 87.66 0.67 18.72 16 17 O -0.58 -23.36 15.14 -3.04 -0.05 -23.41 16 18 C -0.19 -4.82 6.19 -11.68 -0.07 -4.89 16 19 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 20 C -0.12 -2.87 10.24 30.50 0.31 -2.56 16 21 C -0.13 -3.02 2.88 -52.33 -0.15 -3.18 16 22 C -0.09 -2.31 6.47 30.98 0.20 -2.11 16 23 C -0.13 -2.18 8.08 31.20 0.25 -1.93 16 24 C -0.09 -1.41 8.10 30.98 0.25 -1.16 16 25 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.03 1.68 7.30 -2.38 -0.02 1.66 16 28 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 29 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.41 12.98 8.47 -92.71 -0.79 12.19 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.07 1.96 8.05 -2.38 -0.02 1.94 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -68.94 330.88 1.71 -67.23 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.23 Total: 23.27 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 4.32 Total: 2.33 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -4.82 Total: -116.84 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -68.94 1.71 -67.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038763764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.537 kcal (2) G-P(sol) polarization free energy of solvation -68.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds