Wall clock time and date at job start Mon Mar 30 2020 00:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47116 * 125.76654 * 359.69183 * 9 7 2 11 11 C 1.54544 * 107.26468 * 182.48072 * 10 9 7 12 12 C 1.54414 * 102.36442 * 22.02396 * 11 10 9 13 13 H 1.09001 * 110.71733 * 80.35528 * 12 11 10 14 14 C 1.48209 * 125.76670 * 179.97438 * 9 7 2 15 15 H 1.09006 * 111.52528 * 33.83500 * 14 9 7 16 16 C 1.53013 * 107.11683 * 271.72597 * 14 9 7 17 17 C 1.52738 * 110.79742 * 191.91632 * 16 14 9 18 18 C 1.53464 * 108.44019 * 63.77445 * 17 16 14 19 19 N 1.45923 * 110.92807 * 204.05797 * 12 11 10 20 20 C 1.34770 * 118.89301 * 248.87394 * 19 12 11 21 21 O 1.21286 * 119.99976 * 0.59527 * 20 19 12 22 22 C 1.50700 * 120.00144 * 180.60358 * 20 19 12 23 23 C 1.52998 * 117.49757 * 248.74077 * 22 20 19 24 24 C 1.53003 * 117.49955 * 180.08466 * 22 20 19 25 25 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.88338 * 302.02476 * 10 9 7 27 27 H 1.08996 * 109.88715 * 63.20097 * 10 9 7 28 28 H 1.08994 * 111.02627 * 263.73235 * 11 10 9 29 29 H 1.09003 * 110.83972 * 140.23116 * 11 10 9 30 30 H 1.09003 * 109.20978 * 312.25418 * 16 14 9 31 31 H 1.09002 * 109.21674 * 71.57320 * 16 14 9 32 32 H 1.09003 * 109.64265 * 183.45600 * 17 16 14 33 33 H 1.08993 * 109.64282 * 304.08870 * 17 16 14 34 34 H 1.09002 * 109.83072 * 61.44440 * 18 17 16 35 35 H 1.08999 * 109.83400 * 182.33295 * 18 17 16 36 36 H 1.09002 * 115.55160 * 34.41185 * 22 20 19 37 37 H 1.09000 * 117.49871 * 0.02562 * 23 22 20 38 38 H 1.09001 * 117.49874 * 145.01886 * 23 22 20 39 39 H 1.08998 * 117.49945 * 214.97774 * 24 22 20 40 40 H 1.09000 * 117.49687 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1381 -2.5359 0.0064 11 6 -0.4460 -4.0491 0.0679 12 6 0.8583 -4.6282 0.6576 13 1 0.8811 -4.5028 1.7401 14 6 1.9340 -3.7395 0.0005 15 1 2.8662 -3.7585 0.5652 16 6 2.1590 -4.1321 -1.4612 17 6 2.5068 -5.6148 -1.5771 18 6 1.3035 -6.4350 -1.0929 19 7 1.0185 -6.0313 0.2902 20 6 0.9128 -6.9719 1.2496 21 8 0.6773 -6.6468 2.3941 22 6 1.0873 -8.4274 0.9004 23 6 -0.1488 -9.3257 0.9784 24 6 0.9534 -9.4468 2.0336 25 1 -0.4850 0.8401 0.0004 26 1 -0.5578 -2.0345 0.8785 27 1 -0.5573 -2.1111 -0.9056 28 1 -0.6326 -4.4510 -0.9279 29 1 -1.2906 -4.2465 0.7280 30 1 1.2514 -3.9310 -2.0303 31 1 2.9768 -3.5388 -1.8702 32 1 2.7229 -5.8603 -2.6169 33 1 3.3751 -5.8371 -0.9569 34 1 0.4384 -6.2301 -1.7237 35 1 1.5425 -7.4979 -1.1271 36 1 1.8146 -8.6389 0.1165 37 1 -1.0883 -8.8638 1.2818 38 1 -0.2346 -10.1284 0.2459 39 1 1.5923 -10.3290 1.9950 40 1 0.7395 -9.0645 3.0317 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049269419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:16 Heat of formation + Delta-G solvation = 22.844881 kcal Electronic energy + Delta-G solvation = -20999.137795 eV Core-core repulsion = 18008.454884 eV Total energy + Delta-G solvation = -2990.682911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38899 -38.34700 -35.99869 -35.22301 -32.36397 -32.18027 -29.05882 -28.28108 -25.48824 -24.26603 -23.43996 -22.54934 -21.93036 -20.10418 -19.46913 -18.11656 -17.50484 -16.86140 -15.77751 -15.32439 -14.74368 -14.33206 -14.28399 -14.16646 -13.80766 -13.40307 -12.89634 -12.65028 -12.33425 -12.07280 -11.90086 -11.67885 -11.35854 -11.04650 -10.96897 -10.77445 -10.73889 -10.62801 -10.56121 -10.38614 -10.09978 -10.04512 -9.62573 -9.60975 -9.43836 -8.60639 -8.23962 -6.84951 -5.69785 -3.04030 2.64023 3.15627 3.41782 3.46111 3.47242 3.79737 4.47599 4.50748 4.65372 4.78598 4.90246 5.09096 5.18638 5.28150 5.39799 5.44702 5.51499 5.58141 5.61927 5.68619 5.74441 5.83682 5.88620 6.00778 6.03517 6.12882 6.23081 6.32401 6.38225 6.53051 6.61679 6.75713 6.99310 7.08683 7.55941 7.61500 7.67601 7.83451 8.24669 8.41718 9.21769 9.81488 10.47628 11.41426 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.037446 B = 0.005084 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.564684 B = 5505.642225 C = 5749.369385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.132 3.868 13 H 0.103 0.897 14 C 0.154 3.846 15 H 0.057 0.943 16 C -0.128 4.128 17 C -0.134 4.134 18 C 0.109 3.891 19 N -0.590 5.590 20 C 0.536 3.464 21 O -0.546 6.546 22 C -0.193 4.193 23 C -0.153 4.153 24 C -0.150 4.150 25 H 0.253 0.747 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -17.724 -3.054 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.056 3.944 11 C -0.191 4.191 12 C 0.029 3.971 13 H 0.121 0.879 14 C 0.046 3.954 15 H 0.075 0.925 16 C -0.168 4.168 17 C -0.173 4.173 18 C -0.014 4.014 19 N -0.321 5.321 20 C 0.324 3.676 21 O -0.424 6.424 22 C -0.214 4.214 23 C -0.191 4.191 24 C -0.188 4.188 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.340 -17.236 -2.459 17.462 hybrid contribution 0.502 0.983 -0.275 1.138 sum 1.843 -16.253 -2.734 16.584 Atomic orbital electron populations 1.69951 1.04873 1.25157 1.56913 1.24788 0.95690 0.97590 1.02202 0.86203 0.78450 0.83249 0.77871 1.21617 1.21168 1.21223 1.18990 0.90387 0.82240 1.43950 0.90509 1.44714 1.01466 0.99289 1.86829 1.21167 0.84310 0.87745 1.01211 1.23109 0.96461 0.99748 0.99737 1.21954 0.96489 0.77869 1.00837 0.87896 1.21365 0.94570 0.86232 0.93240 0.92468 1.22088 1.01903 0.93119 0.99709 1.21951 0.97426 0.97240 1.00721 1.21863 0.98295 0.98924 0.82286 1.47796 1.69617 1.06619 1.08117 1.19679 0.76519 0.86475 0.84916 1.90679 1.49209 1.82330 1.20133 1.22270 1.04069 0.90650 1.04458 1.22914 0.93105 1.00710 1.02341 1.22943 1.01418 0.99004 0.95415 0.93696 0.93092 0.94038 0.92277 0.92126 0.91860 0.92127 0.91330 0.91842 0.91306 0.89912 0.85840 0.88301 0.87985 0.88149 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 10.33 55.49 0.57 -26.54 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.30 10.29 -15.06 -0.15 -6.45 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.11 2.91 -162.20 -0.47 -15.58 16 10 C 0.18 4.43 5.21 -2.89 -0.02 4.41 16 11 C -0.15 -2.98 6.09 -25.18 -0.15 -3.13 16 12 C 0.13 2.55 3.13 -66.86 -0.21 2.34 16 13 H 0.10 2.26 7.01 -51.93 -0.36 1.90 16 14 C 0.15 3.18 3.53 -66.34 -0.23 2.95 16 15 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 16 C -0.13 -2.24 5.12 -26.86 -0.14 -2.38 16 17 C -0.13 -1.74 6.11 -26.63 -0.16 -1.90 16 18 C 0.11 1.33 6.09 -3.60 -0.02 1.30 16 19 N -0.59 -9.27 2.73 -164.38 -0.45 -9.72 16 20 C 0.54 8.53 7.43 -10.99 -0.08 8.45 16 21 O -0.55 -10.84 15.57 5.55 0.09 -10.75 16 22 C -0.19 -2.17 5.10 -91.77 -0.47 -2.64 16 23 C -0.15 -1.44 10.24 -26.70 -0.27 -1.71 16 24 C -0.15 -1.51 10.05 -26.69 -0.27 -1.78 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.05 1.40 7.31 -51.93 -0.38 1.02 16 27 H 0.04 1.11 7.59 -51.93 -0.39 0.71 16 28 H 0.06 1.07 6.92 -51.93 -0.36 0.71 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.18 7.26 -51.93 -0.38 0.81 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.82 7.58 -51.93 -0.39 0.43 16 35 H 0.08 0.76 5.40 -51.93 -0.28 0.48 16 36 H 0.12 1.10 6.48 -51.93 -0.34 0.76 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.11 1.28 7.67 -51.93 -0.40 0.88 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -31.66 310.76 -9.09 -40.75 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.21 Total: 0.81 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.28 Total: -0.81 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.35 Total: -51.84 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.66 -9.09 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049269419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.591 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds