Wall clock time and date at job start Mon Mar 30 2020 00:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47116 * 125.76654 * 359.69183 * 9 7 2 11 11 C 1.54544 * 107.26468 * 182.48072 * 10 9 7 12 12 C 1.54414 * 102.36442 * 22.02396 * 11 10 9 13 13 H 1.09001 * 110.71733 * 80.35528 * 12 11 10 14 14 C 1.48209 * 125.76670 * 179.97438 * 9 7 2 15 15 H 1.09006 * 111.52528 * 33.83500 * 14 9 7 16 16 C 1.53013 * 107.11683 * 271.72597 * 14 9 7 17 17 C 1.52738 * 110.79742 * 191.91632 * 16 14 9 18 18 C 1.53464 * 108.44019 * 63.77445 * 17 16 14 19 19 N 1.45923 * 110.92807 * 204.05797 * 12 11 10 20 20 C 1.34770 * 118.89301 * 248.87394 * 19 12 11 21 21 O 1.21286 * 119.99976 * 0.59527 * 20 19 12 22 22 C 1.50700 * 120.00144 * 180.60358 * 20 19 12 23 23 C 1.52998 * 117.49757 * 248.74077 * 22 20 19 24 24 C 1.53003 * 117.49955 * 180.08466 * 22 20 19 25 25 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.88338 * 302.02476 * 10 9 7 27 27 H 1.08996 * 109.88715 * 63.20097 * 10 9 7 28 28 H 1.08994 * 111.02627 * 263.73235 * 11 10 9 29 29 H 1.09003 * 110.83972 * 140.23116 * 11 10 9 30 30 H 1.09003 * 109.20978 * 312.25418 * 16 14 9 31 31 H 1.09002 * 109.21674 * 71.57320 * 16 14 9 32 32 H 1.09003 * 109.64265 * 183.45600 * 17 16 14 33 33 H 1.08993 * 109.64282 * 304.08870 * 17 16 14 34 34 H 1.09002 * 109.83072 * 61.44440 * 18 17 16 35 35 H 1.08999 * 109.83400 * 182.33295 * 18 17 16 36 36 H 1.09002 * 115.55160 * 34.41185 * 22 20 19 37 37 H 1.09000 * 117.49871 * 0.02562 * 23 22 20 38 38 H 1.09001 * 117.49874 * 145.01886 * 23 22 20 39 39 H 1.08998 * 117.49945 * 214.97774 * 24 22 20 40 40 H 1.09000 * 117.49687 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1381 -2.5359 0.0064 11 6 -0.4460 -4.0491 0.0679 12 6 0.8583 -4.6282 0.6576 13 1 0.8811 -4.5028 1.7401 14 6 1.9340 -3.7395 0.0005 15 1 2.8662 -3.7585 0.5652 16 6 2.1590 -4.1321 -1.4612 17 6 2.5068 -5.6148 -1.5771 18 6 1.3035 -6.4350 -1.0929 19 7 1.0185 -6.0313 0.2902 20 6 0.9128 -6.9719 1.2496 21 8 0.6773 -6.6468 2.3941 22 6 1.0873 -8.4274 0.9004 23 6 -0.1488 -9.3257 0.9784 24 6 0.9534 -9.4468 2.0336 25 1 -0.4850 0.8401 0.0004 26 1 -0.5578 -2.0345 0.8785 27 1 -0.5573 -2.1111 -0.9056 28 1 -0.6326 -4.4510 -0.9279 29 1 -1.2906 -4.2465 0.7280 30 1 1.2514 -3.9310 -2.0303 31 1 2.9768 -3.5388 -1.8702 32 1 2.7229 -5.8603 -2.6169 33 1 3.3751 -5.8371 -0.9569 34 1 0.4384 -6.2301 -1.7237 35 1 1.5425 -7.4979 -1.1271 36 1 1.8146 -8.6389 0.1165 37 1 -1.0883 -8.8638 1.2818 38 1 -0.2346 -10.1284 0.2459 39 1 1.5923 -10.3290 1.9950 40 1 0.7395 -9.0645 3.0317 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049269419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:15 Heat of formation + Delta-G solvation = 3.390675 kcal Electronic energy + Delta-G solvation = -20999.981393 eV Core-core repulsion = 18008.454884 eV Total energy + Delta-G solvation = -2991.526508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70670 -39.76268 -37.00229 -36.75324 -34.15189 -33.71111 -30.93778 -29.86257 -26.97452 -25.97138 -24.72255 -23.31455 -23.18868 -21.98996 -20.80198 -19.45082 -18.79470 -18.62908 -17.09339 -16.79534 -16.43133 -15.96961 -15.56142 -15.35922 -15.02731 -14.97636 -14.31718 -14.20822 -13.75234 -13.56769 -13.46585 -13.07075 -12.81360 -12.60423 -12.40681 -12.35734 -12.28733 -12.11953 -11.97184 -11.66646 -11.56979 -11.43175 -11.29790 -11.22568 -10.74058 -10.71098 -9.61061 -8.91590 -7.85550 -5.21871 1.44096 1.47754 1.49540 1.53960 1.93210 2.48922 2.96480 3.32043 3.45339 3.56665 3.83369 3.86976 3.94388 4.02341 4.05182 4.10464 4.13212 4.27249 4.36847 4.55506 4.62177 4.65785 4.79372 4.81650 4.82082 4.93304 4.98201 5.07916 5.09456 5.20632 5.28738 5.35629 5.38651 5.53887 5.60925 5.63570 5.71005 6.16185 6.46336 7.06971 7.18881 7.73297 8.39075 9.24471 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.037446 B = 0.005084 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.564684 B = 5505.642225 C = 5749.369385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.294 1.294 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.192 3.808 11 C -0.132 4.132 12 C 0.146 3.854 13 H 0.066 0.934 14 C 0.150 3.850 15 H 0.045 0.955 16 C -0.118 4.118 17 C -0.124 4.124 18 C 0.105 3.895 19 N -0.589 5.589 20 C 0.527 3.473 21 O -0.598 6.598 22 C -0.198 4.198 23 C -0.136 4.136 24 C -0.154 4.154 25 H 0.247 0.753 26 H 0.008 0.992 27 H 0.013 0.987 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.160 0.840 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -20.868 -5.031 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.221 1.221 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.344 5.344 10 C 0.067 3.933 11 C -0.172 4.172 12 C 0.041 3.959 13 H 0.085 0.915 14 C 0.043 3.957 15 H 0.063 0.937 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.016 4.016 19 N -0.320 5.320 20 C 0.318 3.682 21 O -0.479 6.479 22 C -0.218 4.218 23 C -0.174 4.174 24 C -0.191 4.191 25 H 0.056 0.944 26 H 0.027 0.973 27 H 0.031 0.969 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.146 0.854 36 H 0.178 0.822 37 H 0.099 0.901 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.648 -20.437 -4.470 21.087 hybrid contribution 0.117 1.937 0.401 1.981 sum 2.765 -18.501 -4.069 19.143 Atomic orbital electron populations 1.70178 1.06334 1.25337 1.58274 1.25634 0.96564 1.00949 1.02599 0.85152 0.77135 0.78825 0.78217 1.22055 1.20601 1.19987 1.19376 0.90901 0.83526 1.43023 0.90089 1.44972 1.01939 1.00625 1.86863 1.20836 0.84097 0.90583 0.97807 1.22905 0.96871 0.96179 1.01210 1.21407 0.95459 0.80542 0.98540 0.91530 1.21572 0.94100 0.84430 0.95593 0.93671 1.21879 1.00919 0.96817 0.96175 1.21916 0.97882 0.93233 1.03205 1.22234 0.98295 1.01276 0.79777 1.47855 1.69439 1.04656 1.10012 1.20638 0.75060 0.88510 0.84023 1.90661 1.51390 1.83451 1.22428 1.22313 1.06380 0.86972 1.06172 1.23049 0.91552 1.00394 1.02374 1.23032 1.02590 0.99489 0.93986 0.94414 0.97345 0.96889 0.89825 0.91839 0.93066 0.93341 0.87683 0.91401 0.90377 0.85439 0.82228 0.90100 0.84178 0.84950 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.66 10.33 21.65 0.22 -58.44 16 2 C -0.06 -3.75 5.49 84.86 0.47 -3.29 16 3 Si 0.98 46.69 29.55 68.60 2.03 48.71 16 4 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.24 -13.69 10.29 84.03 0.86 -12.82 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -32.55 2.91 -667.08 -1.94 -34.49 16 10 C 0.19 9.95 5.21 86.79 0.45 10.40 16 11 C -0.13 -5.32 6.09 31.60 0.19 -5.12 16 12 C 0.15 5.73 3.13 46.00 0.14 5.87 16 13 H 0.07 3.10 7.01 -2.39 -0.02 3.08 16 14 C 0.15 6.29 3.53 45.08 0.16 6.45 16 15 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 16 C -0.12 -3.98 5.12 30.51 0.16 -3.83 16 17 C -0.12 -2.70 6.11 30.66 0.19 -2.51 16 18 C 0.10 2.08 6.09 86.46 0.53 2.60 16 19 N -0.59 -17.42 2.73 -792.37 -2.16 -19.59 16 20 C 0.53 16.01 7.43 87.66 0.65 16.66 16 21 O -0.60 -24.29 15.57 -3.05 -0.05 -24.34 16 22 C -0.20 -3.65 5.10 -11.54 -0.06 -3.71 16 23 C -0.14 -2.01 10.24 30.62 0.31 -1.70 16 24 C -0.15 -2.63 10.05 30.62 0.31 -2.32 16 25 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 26 H 0.01 0.49 7.31 -2.38 -0.02 0.47 16 27 H 0.01 0.73 7.59 -2.39 -0.02 0.71 16 28 H 0.08 2.94 6.92 -2.39 -0.02 2.93 16 29 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.05 1.85 7.26 -2.39 -0.02 1.83 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.48 7.58 -2.39 -0.02 1.46 16 35 H 0.13 1.48 5.40 -2.39 -0.01 1.46 16 36 H 0.16 1.79 6.48 -2.39 -0.02 1.78 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.14 1.06 8.14 -2.39 -0.02 1.05 16 39 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.81 7.67 -2.39 -0.02 1.80 16 Total: -1.00 -75.24 310.76 3.48 -71.76 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.02 Total: 9.69 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 4.36 Total: 6.68 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.88 Total: -112.51 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.24 3.48 -71.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049269419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.149 kcal (2) G-P(sol) polarization free energy of solvation -75.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds