Wall clock time and date at job start Mon Mar 30 2020 00:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99619 * 2 1 4 4 H 1.48500 * 109.47019 * 95.32219 * 3 2 1 5 5 H 1.48504 * 109.47048 * 215.31996 * 3 2 1 6 6 H 1.48501 * 109.47135 * 335.31978 * 3 2 1 7 7 C 1.38810 * 120.00204 * 179.72028 * 2 1 3 8 8 H 1.08005 * 119.99603 * 31.66901 * 7 2 1 9 9 N 1.36936 * 119.99933 * 211.66449 * 7 2 1 10 10 C 1.47133 * 125.58815 * 356.43065 * 9 7 2 11 11 C 1.54603 * 107.36300 * 180.92737 * 10 9 7 12 12 C 1.53649 * 102.73243 * 20.75480 * 11 10 9 13 13 C 1.52369 * 116.39883 * 197.07798 * 12 11 10 14 14 N 1.47886 * 85.59370 * 218.64998 * 13 12 11 15 15 C 1.34783 * 134.34573 * 203.48866 * 14 13 12 16 16 O 1.21277 * 120.00009 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99503 * 359.97438 * 15 14 13 18 18 C 1.53783 * 113.61177 * 277.49285 * 17 15 14 19 19 C 1.53782 * 87.08268 * 220.02399 * 18 17 15 20 20 C 1.53781 * 113.60784 * 180.02562 * 17 15 14 21 21 C 1.47894 * 91.31598 * 23.48483 * 14 13 12 22 22 C 1.47724 * 125.58246 * 176.12436 * 9 7 2 23 23 H 0.96999 * 119.99534 * 174.97837 * 1 2 3 24 24 H 1.08995 * 109.87065 * 300.37283 * 10 9 7 25 25 H 1.09003 * 109.86433 * 61.34725 * 10 9 7 26 26 H 1.09004 * 110.75686 * 139.06749 * 11 10 9 27 27 H 1.09004 * 110.75782 * 262.25533 * 11 10 9 28 28 H 1.08997 * 113.85627 * 332.81502 * 13 12 11 29 29 H 1.09006 * 113.85331 * 104.48096 * 13 12 11 30 30 H 1.08991 * 112.85504 * 48.80325 * 17 15 14 31 31 H 1.08995 * 113.61500 * 334.57428 * 18 17 15 32 32 H 1.09001 * 113.61530 * 105.47285 * 18 17 15 33 33 H 1.08994 * 113.61202 * 270.88773 * 19 18 17 34 34 H 1.08993 * 113.68853 * 139.99458 * 19 18 17 35 35 H 1.09003 * 113.61292 * 254.52361 * 20 17 15 36 36 H 1.09000 * 113.62031 * 25.42756 * 20 17 15 37 37 H 1.08994 * 113.85668 * 222.35039 * 21 14 13 38 38 H 1.08994 * 113.96552 * 90.69138 * 21 14 13 39 39 H 1.09008 * 110.40087 * 276.33359 * 22 9 7 40 40 H 1.08993 * 110.40221 * 38.74960 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6101 1.9816 1.3940 5 1 3.4870 1.4754 -0.8095 6 1 1.3958 2.6825 -0.5846 7 6 2.0103 -1.2021 0.0059 8 1 1.5909 -2.0702 -0.4810 9 7 3.2268 -1.2873 0.6288 10 6 3.9443 -0.1700 1.2627 11 6 5.2770 -0.7295 1.8112 12 6 5.4674 -2.0153 0.9919 13 6 6.4664 -3.0265 1.5404 14 7 6.8500 -3.2422 0.1285 15 6 7.4290 -4.2552 -0.5463 16 8 7.6289 -4.1538 -1.7382 17 6 7.8278 -5.5137 0.1804 18 6 9.1868 -5.4093 0.8926 19 6 9.4552 -6.8487 0.4223 20 6 8.4750 -6.5713 -0.7293 21 6 6.3453 -1.9041 -0.2486 22 6 4.0308 -2.5173 0.7801 23 1 -0.4849 -0.8368 -0.0735 24 1 4.1444 0.6075 0.5255 25 1 3.3477 0.2380 2.0786 26 1 6.0935 -0.0307 1.6290 27 1 5.1931 -0.9544 2.8745 28 1 7.2546 -2.5823 2.1482 29 1 6.0028 -3.8947 2.0088 30 1 7.0318 -5.9084 0.8115 31 1 9.8568 -4.6729 0.4490 32 1 9.1060 -5.3116 1.9752 33 1 9.1049 -7.6086 1.1207 34 1 10.4801 -7.0175 0.0920 35 1 7.8195 -7.4120 -0.9564 36 1 8.9506 -6.1524 -1.6162 37 1 5.7866 -1.8913 -1.1844 38 1 7.0950 -1.1152 -0.1887 39 1 3.6934 -3.0877 1.6455 40 1 3.9704 -3.1242 -0.1232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072386572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:01 Heat of formation + Delta-G solvation = 52.962943 kcal Electronic energy + Delta-G solvation = -20450.032894 eV Core-core repulsion = 17460.656001 eV Total energy + Delta-G solvation = -2989.376894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.81175 -39.36958 -37.15671 -35.83630 -32.41846 -30.19590 -28.90339 -27.36419 -26.14236 -25.87284 -25.27022 -23.13476 -20.78868 -20.37341 -19.06732 -18.45922 -17.47228 -17.08641 -16.12877 -15.75935 -15.34320 -15.13297 -14.78081 -13.86121 -13.56223 -13.43195 -13.31322 -12.90839 -12.73852 -12.64469 -12.30385 -11.96988 -11.80386 -11.56134 -11.31743 -11.15096 -10.95596 -10.77143 -10.62102 -10.59910 -10.36907 -10.11834 -9.64871 -9.48920 -9.17190 -8.61295 -8.35171 -7.07662 -6.37627 -3.11889 2.67806 2.84805 3.41486 3.51145 3.68420 4.27731 4.34798 4.40343 4.45589 4.58721 4.60514 4.74421 4.83037 4.96306 5.24885 5.31149 5.33639 5.38858 5.41997 5.43491 5.50456 5.54208 5.60926 5.72641 5.74255 5.84639 5.86136 5.92231 5.98191 6.10316 6.21297 6.24698 6.48132 6.51410 6.56514 6.78787 7.69991 7.79070 8.23616 8.34294 9.05091 9.61513 10.27947 11.13833 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.039235 B = 0.004536 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.475400 B = 6171.055057 C = 6324.531140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.018 4.018 3 Si 1.065 2.935 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.300 1.300 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.106 3.894 11 C -0.113 4.113 12 C -0.110 4.110 13 C 0.118 3.882 14 N -0.639 5.639 15 C 0.542 3.458 16 O -0.546 6.546 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.119 4.119 21 C 0.125 3.875 22 C 0.166 3.834 23 H 0.263 0.737 24 H 0.035 0.965 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.827 -9.265 6.124 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.219 4.219 3 Si 0.899 3.101 4 H -0.220 1.220 5 H -0.221 1.221 6 H -0.228 1.228 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.337 5.337 10 C -0.019 4.019 11 C -0.152 4.152 12 C -0.111 4.111 13 C -0.005 4.005 14 N -0.374 5.374 15 C 0.331 3.669 16 O -0.424 6.424 17 C -0.154 4.154 18 C -0.159 4.159 19 C -0.179 4.179 20 C -0.156 4.156 21 C 0.004 3.996 22 C 0.040 3.960 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.715 -7.741 5.365 20.951 hybrid contribution 0.170 -1.584 -0.075 1.595 sum 18.885 -9.325 5.290 21.716 Atomic orbital electron populations 1.70925 1.05981 1.30145 1.48171 1.25648 0.96013 1.00899 0.99341 0.83859 0.73849 0.76142 0.76243 1.21973 1.22098 1.22800 1.19944 0.92532 0.98758 1.35287 0.90457 1.44845 1.20632 1.02376 1.65815 1.21817 0.91436 0.92288 0.96333 1.22329 0.98183 0.95423 0.99239 1.22623 0.96335 0.96394 0.95779 1.23026 0.95527 0.98176 0.83804 1.50222 1.60149 1.16071 1.10952 1.20193 0.75764 0.83958 0.86947 1.90680 1.54876 1.81666 1.15181 1.22733 0.98672 0.94304 0.99721 1.22790 0.94952 0.97906 1.00261 1.22820 1.00062 0.96569 0.98434 1.22810 0.97903 0.97383 0.97551 1.22948 0.94241 0.83068 0.99381 1.21087 0.85918 0.90229 0.98762 0.92619 0.94771 0.93919 0.91073 0.90639 0.89526 0.89871 0.87138 0.89870 0.90761 0.89896 0.91051 0.91028 0.88778 0.89599 0.89907 0.95086 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.57 13.70 55.49 0.76 -27.81 16 2 C -0.02 -0.53 5.44 -17.43 -0.09 -0.62 16 3 Si 1.07 26.65 24.65 -169.99 -4.19 22.46 16 4 H -0.29 -6.81 6.40 56.52 0.36 -6.45 16 5 H -0.29 -6.97 6.41 56.52 0.36 -6.61 16 6 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 7 C -0.34 -9.73 10.42 -15.06 -0.16 -9.89 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 9 N -0.61 -14.77 3.39 -170.36 -0.58 -15.35 16 10 C 0.11 2.23 4.86 -2.85 -0.01 2.22 16 11 C -0.11 -1.70 6.35 -25.55 -0.16 -1.86 16 12 C -0.11 -1.65 0.99 -154.72 -0.15 -1.81 16 13 C 0.12 1.34 7.99 -3.60 -0.03 1.31 16 14 N -0.64 -9.10 3.62 -186.88 -0.68 -9.77 16 15 C 0.54 8.17 7.58 -10.98 -0.08 8.09 16 16 O -0.55 -10.43 16.62 5.56 0.09 -10.34 16 17 C -0.13 -1.45 3.90 -90.96 -0.35 -1.80 16 18 C -0.12 -1.04 7.63 -25.92 -0.20 -1.24 16 19 C -0.14 -1.09 8.08 -25.93 -0.21 -1.30 16 20 C -0.12 -1.21 7.40 -25.94 -0.19 -1.40 16 21 C 0.13 1.94 8.16 -3.59 -0.03 1.91 16 22 C 0.17 3.25 6.65 -3.04 -0.02 3.23 16 23 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 24 H 0.03 0.76 4.26 -51.93 -0.22 0.54 16 25 H 0.04 0.95 6.87 -51.93 -0.36 0.60 16 26 H 0.07 0.90 7.99 -51.93 -0.41 0.49 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.12 7.43 -51.93 -0.39 0.73 16 37 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 38 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 39 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 LS Contribution 316.29 15.07 4.77 4.77 Total: -1.00 -33.98 316.29 -8.04 -42.01 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.52 Total: -2.81 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.70 Total: -3.16 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.49 Total: -52.93 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -4.19 Total: 22.46 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.98 -8.04 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072386572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.977 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds