Wall clock time and date at job start Mon Mar 30 2020 00:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99619 * 2 1 4 4 H 1.48500 * 109.47019 * 95.32219 * 3 2 1 5 5 H 1.48504 * 109.47048 * 215.31996 * 3 2 1 6 6 H 1.48501 * 109.47135 * 335.31978 * 3 2 1 7 7 C 1.38810 * 120.00204 * 179.72028 * 2 1 3 8 8 H 1.08005 * 119.99603 * 31.66901 * 7 2 1 9 9 N 1.36936 * 119.99933 * 211.66449 * 7 2 1 10 10 C 1.47133 * 125.58815 * 356.43065 * 9 7 2 11 11 C 1.54603 * 107.36300 * 180.92737 * 10 9 7 12 12 C 1.53649 * 102.73243 * 20.75480 * 11 10 9 13 13 C 1.52369 * 116.39883 * 197.07798 * 12 11 10 14 14 N 1.47886 * 85.59370 * 218.64998 * 13 12 11 15 15 C 1.34783 * 134.34573 * 203.48866 * 14 13 12 16 16 O 1.21277 * 120.00009 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99503 * 359.97438 * 15 14 13 18 18 C 1.53783 * 113.61177 * 277.49285 * 17 15 14 19 19 C 1.53782 * 87.08268 * 220.02399 * 18 17 15 20 20 C 1.53781 * 113.60784 * 180.02562 * 17 15 14 21 21 C 1.47894 * 91.31598 * 23.48483 * 14 13 12 22 22 C 1.47724 * 125.58246 * 176.12436 * 9 7 2 23 23 H 0.96999 * 119.99534 * 174.97837 * 1 2 3 24 24 H 1.08995 * 109.87065 * 300.37283 * 10 9 7 25 25 H 1.09003 * 109.86433 * 61.34725 * 10 9 7 26 26 H 1.09004 * 110.75686 * 139.06749 * 11 10 9 27 27 H 1.09004 * 110.75782 * 262.25533 * 11 10 9 28 28 H 1.08997 * 113.85627 * 332.81502 * 13 12 11 29 29 H 1.09006 * 113.85331 * 104.48096 * 13 12 11 30 30 H 1.08991 * 112.85504 * 48.80325 * 17 15 14 31 31 H 1.08995 * 113.61500 * 334.57428 * 18 17 15 32 32 H 1.09001 * 113.61530 * 105.47285 * 18 17 15 33 33 H 1.08994 * 113.61202 * 270.88773 * 19 18 17 34 34 H 1.08993 * 113.68853 * 139.99458 * 19 18 17 35 35 H 1.09003 * 113.61292 * 254.52361 * 20 17 15 36 36 H 1.09000 * 113.62031 * 25.42756 * 20 17 15 37 37 H 1.08994 * 113.85668 * 222.35039 * 21 14 13 38 38 H 1.08994 * 113.96552 * 90.69138 * 21 14 13 39 39 H 1.09008 * 110.40087 * 276.33359 * 22 9 7 40 40 H 1.08993 * 110.40221 * 38.74960 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6101 1.9816 1.3940 5 1 3.4870 1.4754 -0.8095 6 1 1.3958 2.6825 -0.5846 7 6 2.0103 -1.2021 0.0059 8 1 1.5909 -2.0702 -0.4810 9 7 3.2268 -1.2873 0.6288 10 6 3.9443 -0.1700 1.2627 11 6 5.2770 -0.7295 1.8112 12 6 5.4674 -2.0153 0.9919 13 6 6.4664 -3.0265 1.5404 14 7 6.8500 -3.2422 0.1285 15 6 7.4290 -4.2552 -0.5463 16 8 7.6289 -4.1538 -1.7382 17 6 7.8278 -5.5137 0.1804 18 6 9.1868 -5.4093 0.8926 19 6 9.4552 -6.8487 0.4223 20 6 8.4750 -6.5713 -0.7293 21 6 6.3453 -1.9041 -0.2486 22 6 4.0308 -2.5173 0.7801 23 1 -0.4849 -0.8368 -0.0735 24 1 4.1444 0.6075 0.5255 25 1 3.3477 0.2380 2.0786 26 1 6.0935 -0.0307 1.6290 27 1 5.1931 -0.9544 2.8745 28 1 7.2546 -2.5823 2.1482 29 1 6.0028 -3.8947 2.0088 30 1 7.0318 -5.9084 0.8115 31 1 9.8568 -4.6729 0.4490 32 1 9.1060 -5.3116 1.9752 33 1 9.1049 -7.6086 1.1207 34 1 10.4801 -7.0175 0.0920 35 1 7.8195 -7.4120 -0.9564 36 1 8.9506 -6.1524 -1.6162 37 1 5.7866 -1.8913 -1.1844 38 1 7.0950 -1.1152 -0.1887 39 1 3.6934 -3.0877 1.6455 40 1 3.9704 -3.1242 -0.1232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072386572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:00 Heat of formation + Delta-G solvation = 29.025078 kcal Electronic energy + Delta-G solvation = -20451.070918 eV Core-core repulsion = 17460.656001 eV Total energy + Delta-G solvation = -2990.414917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95398 -40.41483 -38.24366 -37.36347 -34.44775 -31.80182 -30.31604 -28.61435 -27.36168 -26.64995 -26.36203 -24.75004 -22.61465 -21.28774 -20.14960 -19.69656 -19.30365 -18.23572 -17.30482 -16.94583 -16.73635 -16.33662 -16.11401 -15.36177 -15.24551 -14.89448 -14.61185 -14.13500 -13.82280 -13.51835 -13.42010 -13.28322 -13.01291 -12.96416 -12.91232 -12.68619 -12.15435 -11.91295 -11.87338 -11.83131 -11.47060 -11.44077 -11.29166 -11.01727 -10.59719 -10.54212 -9.74901 -9.12606 -8.72509 -5.37264 1.38914 1.52336 1.57704 1.70436 1.79388 2.51351 2.96971 3.21972 3.35082 3.51485 3.55445 3.67393 3.69201 3.90656 3.93650 4.03581 4.12055 4.33506 4.41412 4.56051 4.59059 4.64861 4.73698 4.78269 4.78682 4.83920 4.85495 4.90634 4.99606 5.02379 5.04655 5.09183 5.16835 5.21241 5.30980 5.51614 5.55971 6.08687 6.71125 6.83873 7.10754 7.49338 8.14474 8.80566 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.039235 B = 0.004536 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.475400 B = 6171.055057 C = 6324.531140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.075 4.075 3 Si 1.110 2.890 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.309 1.309 7 C -0.333 4.333 8 H 0.039 0.961 9 N -0.633 5.633 10 C 0.092 3.908 11 C -0.096 4.096 12 C -0.103 4.103 13 C 0.137 3.863 14 N -0.643 5.643 15 C 0.531 3.469 16 O -0.601 6.601 17 C -0.133 4.133 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.131 4.131 21 C 0.116 3.884 22 C 0.161 3.839 23 H 0.248 0.752 24 H 0.027 0.973 25 H 0.032 0.968 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.111 0.889 39 H 0.042 0.958 40 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.355 -9.243 9.373 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.270 4.270 3 Si 0.937 3.063 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.238 1.238 7 C -0.461 4.461 8 H 0.057 0.943 9 N -0.360 5.360 10 C -0.032 4.032 11 C -0.134 4.134 12 C -0.104 4.104 13 C 0.016 3.984 14 N -0.376 5.376 15 C 0.323 3.677 16 O -0.483 6.483 17 C -0.154 4.154 18 C -0.149 4.149 19 C -0.164 4.164 20 C -0.169 4.169 21 C -0.006 4.006 22 C 0.036 3.964 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.150 0.850 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.129 0.871 39 H 0.060 0.940 40 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 22.280 -7.752 8.672 25.134 hybrid contribution -1.005 -1.710 -1.174 2.305 sum 21.275 -9.462 7.499 24.462 Atomic orbital electron populations 1.71047 1.07215 1.29248 1.51499 1.27006 0.96021 1.04513 0.99430 0.83290 0.72971 0.71844 0.78157 1.18522 1.20412 1.23752 1.19828 0.94666 0.97364 1.34252 0.94347 1.44943 1.20143 1.05387 1.65564 1.22046 0.94153 0.91452 0.95526 1.22352 0.95430 0.95153 1.00417 1.22421 0.93845 0.97802 0.96371 1.23242 0.95029 0.97681 0.82464 1.50363 1.59384 1.15387 1.12506 1.21058 0.74952 0.85131 0.86577 1.90650 1.57218 1.82750 1.17711 1.22902 1.00422 0.92053 1.00028 1.22783 0.92634 0.98015 1.01490 1.22801 0.99741 0.96726 0.97116 1.22849 0.98949 0.97392 0.97698 1.23011 0.94969 0.84941 0.97689 1.21214 0.88855 0.88617 0.97675 0.94279 0.95540 0.95054 0.87452 0.87537 0.84977 0.87836 0.85228 0.90967 0.87996 0.87783 0.90326 0.90756 0.91404 0.93933 0.87099 0.93984 0.96790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.78 13.70 21.65 0.30 -61.49 16 2 C -0.08 -4.57 5.44 84.86 0.46 -4.10 16 3 Si 1.11 54.08 24.65 68.60 1.69 55.78 16 4 H -0.26 -11.23 6.40 99.48 0.64 -10.59 16 5 H -0.28 -12.61 6.41 99.48 0.64 -11.98 16 6 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 7 C -0.33 -19.92 10.42 84.03 0.88 -19.05 16 8 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 9 N -0.63 -30.78 3.39 -692.89 -2.35 -33.12 16 10 C 0.09 3.66 4.86 86.80 0.42 4.08 16 11 C -0.10 -2.37 6.35 31.36 0.20 -2.18 16 12 C -0.10 -2.76 0.99 -52.08 -0.05 -2.81 16 13 C 0.14 2.39 7.99 85.90 0.69 3.08 16 14 N -0.64 -16.75 3.62 -863.55 -3.12 -19.87 16 15 C 0.53 15.51 7.58 87.66 0.66 16.17 16 16 O -0.60 -23.68 16.62 -3.02 -0.05 -23.73 16 17 C -0.13 -2.57 3.90 -11.01 -0.04 -2.61 16 18 C -0.11 -1.49 7.63 31.12 0.24 -1.25 16 19 C -0.13 -1.53 8.08 31.11 0.25 -1.28 16 20 C -0.13 -2.52 7.40 31.11 0.23 -2.29 16 21 C 0.12 3.39 8.16 85.91 0.70 4.09 16 22 C 0.16 6.23 6.65 86.36 0.57 6.81 16 23 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 24 H 0.03 1.11 4.26 -2.39 -0.01 1.10 16 25 H 0.03 1.32 6.87 -2.39 -0.02 1.30 16 26 H 0.11 2.00 7.99 -2.38 -0.02 1.98 16 27 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.48 8.12 -2.38 -0.02 1.46 16 30 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.66 7.43 -2.39 -0.02 1.64 16 37 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 38 H 0.11 2.61 8.04 -2.39 -0.02 2.60 16 39 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.01 0.60 8.08 -2.39 -0.02 0.58 16 Total: -1.00 -81.49 316.29 2.51 -78.98 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.83 Total: 4.79 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.21 Total: -1.33 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -5.17 Total: -114.48 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 54.08 SS G_CDS: 1.69 Total: 55.78 kcal Total: -81.49 2.51 -78.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072386572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.003 kcal (2) G-P(sol) polarization free energy of solvation -81.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds