Wall clock time and date at job start Mon Mar 30 2020 00:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47341 * 270.00254 * 3 2 1 5 5 H 1.48499 * 109.47492 * 30.00293 * 3 2 1 6 6 H 1.48497 * 109.47143 * 150.00259 * 3 2 1 7 7 C 1.38813 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99664 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99858 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99712 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.32569 * 34.99780 * 10 9 7 12 12 C 1.53032 * 109.18057 * 154.55845 * 10 9 7 13 13 C 1.53967 * 108.83124 * 175.58980 * 12 10 9 14 14 H 1.08998 * 112.99426 * 169.00473 * 13 12 10 15 15 C 1.55426 * 106.41376 * 293.82069 * 13 12 10 16 16 C 1.55174 * 100.35082 * 73.36938 * 15 13 12 17 17 H 1.09003 * 112.48280 * 163.34416 * 16 15 13 18 18 C 1.52987 * 109.32527 * 275.35348 * 10 9 7 19 19 N 1.47795 * 104.87700 * 40.82846 * 16 15 13 20 20 C 1.34773 * 125.85699 * 153.21561 * 19 16 15 21 21 O 1.21279 * 120.00020 * 0.02562 * 20 19 16 22 22 C 1.50695 * 120.00118 * 179.97438 * 20 19 16 23 23 C 1.52995 * 117.50334 * 248.75284 * 22 20 19 24 24 C 1.52992 * 117.50353 * 180.08929 * 22 20 19 25 25 C 1.48741 * 107.40197 * 333.52171 * 19 16 15 26 26 H 0.97002 * 120.00256 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99897 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.57411 * 295.39060 * 12 10 9 29 29 H 1.08996 * 109.57906 * 55.77516 * 12 10 9 30 30 H 1.08999 * 111.23318 * 315.60211 * 15 13 12 31 31 H 1.08993 * 111.23746 * 191.14684 * 15 13 12 32 32 H 1.09001 * 109.53327 * 304.70307 * 18 10 9 33 33 H 1.08998 * 109.53341 * 64.93379 * 18 10 9 34 34 H 1.09004 * 115.55037 * 34.42004 * 22 20 19 35 35 H 1.08998 * 117.49862 * 0.02562 * 23 22 20 36 36 H 1.09005 * 117.50363 * 145.01942 * 23 22 20 37 37 H 1.08999 * 117.50511 * 214.98568 * 24 22 20 38 38 H 1.09000 * 117.49979 * 359.97438 * 24 22 20 39 39 H 1.09001 * 109.84554 * 241.62271 * 25 19 16 40 40 H 1.09000 * 109.93817 * 120.49601 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5625 -3.2047 -0.5906 12 6 5.4936 -2.2539 -0.6226 13 6 6.2969 -3.5632 -0.5180 14 1 7.2153 -3.5473 -1.1047 15 6 6.5426 -3.8079 0.9971 16 6 5.1217 -4.2438 1.4432 17 1 5.1236 -4.7410 2.4132 18 6 4.2492 -2.9764 1.4364 19 7 4.6368 -5.1234 0.3590 20 6 3.7310 -6.1126 0.4906 21 8 3.2381 -6.3433 1.5745 22 6 3.3297 -6.9313 -0.7092 23 6 1.9045 -6.7582 -1.2380 24 6 2.2955 -8.0383 -0.4953 25 6 5.3368 -4.7182 -0.8892 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0014 28 1 5.3829 -1.9760 -1.6708 29 1 6.0152 -1.4614 -0.0859 30 1 6.8504 -2.8912 1.5002 31 1 7.2683 -4.6055 1.1556 32 1 4.7185 -2.2074 2.0499 33 1 3.2625 -3.2110 1.8358 34 1 4.1185 -7.1138 -1.4390 35 1 1.2572 -6.0518 -0.7184 36 1 1.7556 -6.8272 -2.3157 37 1 2.4037 -8.9489 -1.0845 38 1 1.9056 -8.1747 0.5133 39 1 4.6104 -4.3762 -1.6265 40 1 5.9033 -5.5599 -1.2877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094829657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:16 Heat of formation + Delta-G solvation = -10.618823 kcal Electronic energy + Delta-G solvation = -21026.231064 eV Core-core repulsion = 18034.097058 eV Total energy + Delta-G solvation = -2992.134006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.99189 -39.97619 -37.04818 -36.65100 -34.20336 -33.03314 -31.99213 -29.98257 -26.94208 -25.57883 -25.35609 -23.37525 -22.43440 -22.35049 -20.68764 -19.86250 -19.49057 -18.57373 -17.27895 -16.68722 -16.33150 -16.29794 -15.53271 -15.38585 -14.95064 -14.68298 -14.50190 -14.17337 -13.86934 -13.62254 -13.45604 -13.26528 -12.99628 -12.84500 -12.77984 -12.50345 -12.32134 -12.11034 -11.87481 -11.68377 -11.52859 -11.47065 -11.35012 -11.03563 -10.94188 -10.84559 -9.66410 -9.31856 -8.05886 -5.40030 1.34093 1.39843 1.45493 1.47049 1.93799 2.45625 2.90479 3.23985 3.38114 3.47154 3.56553 3.76529 3.84475 3.93767 4.02357 4.14422 4.18198 4.26168 4.34432 4.39628 4.55931 4.61542 4.69045 4.74416 4.78513 4.87373 4.90783 4.98149 5.04532 5.10597 5.17630 5.23754 5.31781 5.37093 5.46095 5.51943 5.72217 6.18371 6.55227 7.05034 7.13614 7.80713 8.01953 9.16491 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.006740 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.676121 B = 4153.608792 C = 5028.035405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.249 1.249 7 C -0.230 4.230 8 H 0.037 0.963 9 N -0.750 5.750 10 C 0.179 3.821 11 H 0.033 0.967 12 C -0.119 4.119 13 C -0.079 4.079 14 H 0.150 0.850 15 C -0.112 4.112 16 C 0.127 3.873 17 H 0.076 0.924 18 C -0.136 4.136 19 N -0.609 5.609 20 C 0.543 3.457 21 O -0.600 6.600 22 C -0.189 4.189 23 C -0.157 4.157 24 C -0.140 4.140 25 C 0.097 3.903 26 H 0.258 0.742 27 H 0.367 0.633 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.005 0.995 34 H 0.159 0.841 35 H 0.061 0.939 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.050 -11.957 -5.545 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.260 4.260 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.225 1.225 6 H -0.173 1.173 7 C -0.361 4.361 8 H 0.055 0.945 9 N -0.394 5.394 10 C 0.071 3.929 11 H 0.052 0.948 12 C -0.157 4.157 13 C -0.098 4.098 14 H 0.168 0.832 15 C -0.150 4.150 16 C 0.023 3.977 17 H 0.094 0.906 18 C -0.177 4.177 19 N -0.341 5.341 20 C 0.334 3.666 21 O -0.482 6.482 22 C -0.209 4.209 23 C -0.195 4.195 24 C -0.177 4.177 25 C -0.024 4.024 26 H 0.067 0.933 27 H 0.201 0.799 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.024 0.976 34 H 0.176 0.824 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.518 -12.209 -5.006 22.739 hybrid contribution -0.992 1.260 0.651 1.731 sum 17.527 -10.949 -4.354 21.119 Atomic orbital electron populations 1.69924 1.07459 1.26776 1.59716 1.25625 0.96204 1.01679 1.02459 0.85268 0.78495 0.78702 0.78393 1.19727 1.22513 1.17323 1.18902 0.83037 0.92743 1.41459 0.94476 1.42790 1.02167 1.04141 1.90257 1.20469 0.92858 0.86430 0.93136 0.94850 1.22122 0.93516 0.98666 1.01431 1.22695 0.98425 0.91831 0.96851 0.83220 1.23034 0.92985 1.03114 0.95847 1.22306 0.95329 0.88765 0.91346 0.90598 1.22633 0.97659 0.97225 1.00205 1.49031 1.41066 1.31997 1.12040 1.20023 0.77502 0.79523 0.89576 1.90648 1.56029 1.70888 1.30619 1.22263 0.96020 1.03702 0.98920 1.22959 0.93856 1.00513 1.02163 1.23021 0.99407 0.93318 1.01984 1.22764 0.95258 0.98900 0.85450 0.93349 0.79904 0.90736 0.90405 0.88420 0.88418 0.91114 0.97615 0.82370 0.92004 0.84762 0.84211 0.90170 0.91533 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.86 13.97 21.65 0.30 -65.56 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.18 27.73 68.60 1.90 48.08 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16 7 C -0.23 -13.80 10.40 84.03 0.87 -12.93 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 9 N -0.75 -35.66 4.91 -322.90 -1.59 -37.24 16 10 C 0.18 6.77 2.39 45.00 0.11 6.88 16 11 H 0.03 1.43 5.90 -2.39 -0.01 1.41 16 12 C -0.12 -2.95 4.95 30.93 0.15 -2.80 16 13 C -0.08 -1.30 4.33 -9.05 -0.04 -1.34 16 14 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 15 C -0.11 -2.02 6.18 32.17 0.20 -1.82 16 16 C 0.13 3.73 3.94 45.78 0.18 3.91 16 17 H 0.08 2.45 8.01 -2.39 -0.02 2.43 16 18 C -0.14 -5.16 5.28 30.89 0.16 -5.00 16 19 N -0.61 -17.72 2.42 -780.00 -1.89 -19.61 16 20 C 0.54 18.52 7.66 87.66 0.67 19.19 16 21 O -0.60 -26.27 16.51 -3.03 -0.05 -26.32 16 22 C -0.19 -4.66 5.59 -11.55 -0.06 -4.72 16 23 C -0.16 -4.04 10.24 30.62 0.31 -3.72 16 24 C -0.14 -3.21 10.05 30.61 0.31 -2.90 16 25 C 0.10 1.93 5.19 86.53 0.45 2.38 16 26 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 27 H 0.37 16.24 5.65 -92.71 -0.52 15.72 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.78 7.97 -2.39 -0.02 1.76 16 30 H 0.10 1.61 7.75 -2.39 -0.02 1.59 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 2.52 8.00 -2.39 -0.02 2.50 16 33 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.16 2.61 7.80 -2.38 -0.02 2.59 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.28 7.67 -2.39 -0.02 2.26 16 39 H 0.07 1.51 6.77 -2.39 -0.02 1.50 16 40 H 0.10 1.30 8.07 -2.39 -0.02 1.28 16 Total: -1.00 -83.37 314.91 2.91 -80.46 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.45 Total: 26.80 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 3.78 Total: -6.60 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -3.17 Total: -122.41 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.05 Total: -26.32 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Total: -83.37 2.91 -80.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094829657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.841 kcal (2) G-P(sol) polarization free energy of solvation -83.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds