Wall clock time and date at job start Mon Mar 30 2020 00:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47353 * 240.00011 * 3 2 1 5 5 H 1.48498 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46734 * 119.99916 * 3 2 1 7 7 C 1.38814 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00586 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99651 * 180.02562 * 9 7 2 11 11 C 1.53786 * 113.61554 * 154.99750 * 10 9 7 12 12 C 1.53786 * 87.08106 * 89.11111 * 11 10 9 13 13 C 1.53000 * 113.61120 * 139.98160 * 12 11 10 14 14 N 1.46496 * 109.46916 * 176.53211 * 13 12 11 15 15 C 1.34782 * 120.00081 * 180.02562 * 14 13 12 16 16 O 1.21614 * 119.99948 * 359.97438 * 15 14 13 17 17 C 1.47103 * 120.00086 * 180.02562 * 15 14 13 18 18 C 1.32994 * 119.99554 * 180.02562 * 17 15 14 19 19 C 1.51406 * 136.31075 * 179.97438 * 18 17 15 20 20 C 1.53674 * 87.40886 * 153.99456 * 19 18 17 21 21 C 1.51400 * 136.32012 * 359.97438 * 18 17 15 22 22 C 1.53778 * 87.17115 * 25.39530 * 12 11 10 23 23 H 0.96996 * 120.00578 * 359.97438 * 1 2 3 24 24 H 0.96997 * 120.00321 * 359.97438 * 9 7 2 25 25 H 1.09000 * 112.85284 * 23.79965 * 10 9 7 26 26 H 1.08997 * 113.61225 * 334.56571 * 11 10 9 27 27 H 1.08997 * 113.61556 * 203.66455 * 11 10 9 28 28 H 1.08993 * 113.61852 * 270.80232 * 12 11 10 29 29 H 1.09002 * 109.47564 * 56.53258 * 13 12 11 30 30 H 1.09004 * 109.47321 * 296.53009 * 13 12 11 31 31 H 0.97001 * 120.00125 * 359.97438 * 14 13 12 32 32 H 1.07995 * 119.99864 * 359.97438 * 17 15 14 33 33 H 1.08998 * 113.56558 * 268.62451 * 19 18 17 34 34 H 1.08999 * 113.56083 * 39.36499 * 19 18 17 35 35 H 1.09002 * 113.82896 * 139.85040 * 20 19 18 36 36 H 1.09006 * 113.82514 * 271.42974 * 20 19 18 37 37 H 1.09003 * 113.56214 * 320.63874 * 21 18 17 38 38 H 1.08999 * 113.56416 * 91.37218 * 21 18 17 39 39 H 1.08999 * 113.62088 * 89.15599 * 22 12 11 40 40 H 1.09009 * 113.61403 * 220.05995 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.2597 -4.8291 0.5928 12 6 0.7209 -5.0787 -0.8258 13 6 0.6204 -6.5611 -1.1910 14 7 0.0228 -6.6966 -2.5217 15 6 -0.1656 -7.9203 -3.0544 16 8 0.1609 -8.9119 -2.4306 17 6 -0.7652 -8.0564 -4.3908 18 6 -0.9515 -9.2639 -4.9161 19 6 -1.5129 -9.8215 -6.2069 20 6 -0.6189 -11.0512 -5.9830 21 6 -0.6970 -10.6943 -4.4903 22 6 1.9987 -4.4010 -1.3481 23 1 -0.4851 0.8400 0.0004 24 1 0.3555 -2.3881 -0.0016 25 1 3.0653 -3.5640 0.4046 26 1 0.4929 -4.5196 1.3029 27 1 1.8863 -5.6371 0.9705 28 1 -0.1903 -4.5247 -1.0506 29 1 -0.0030 -7.0743 -0.4588 30 1 1.6168 -7.0032 -1.1935 31 1 -0.2380 -5.9058 -3.0191 32 1 -1.0547 -7.1758 -4.9449 33 1 -2.5790 -10.0433 -6.1586 34 1 -1.2409 -9.2397 -7.0876 35 1 -1.0992 -11.9967 -6.2354 36 1 0.3801 -10.9525 -6.4077 37 1 0.2456 -10.8300 -3.9600 38 1 -1.5418 -11.1528 -3.9764 39 1 2.8277 -5.0917 -1.5021 40 1 1.8276 -3.7463 -2.2027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100240431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:16 Heat of formation + Delta-G solvation = 8.461121 kcal Electronic energy + Delta-G solvation = -18995.213061 eV Core-core repulsion = 16003.906424 eV Total energy + Delta-G solvation = -2991.306637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96933 -40.02612 -39.08368 -35.96414 -34.91684 -32.33734 -31.68267 -28.63096 -26.66136 -26.44489 -25.76050 -24.25702 -22.97424 -21.70828 -19.98047 -19.41595 -19.03486 -17.90652 -17.15089 -16.68110 -16.49162 -16.19532 -15.78358 -15.70719 -15.35431 -14.91426 -14.67415 -14.52492 -13.74766 -13.33433 -13.29449 -12.94570 -12.91885 -12.90322 -12.64691 -12.61201 -12.20259 -12.07493 -11.90262 -11.61729 -11.49153 -11.39663 -10.97295 -10.85316 -10.62317 -10.30461 -9.89283 -9.00357 -7.95370 -5.23829 0.38297 1.48029 1.50624 1.56731 2.25110 2.32031 2.55904 3.36611 3.41272 3.59373 3.71571 3.79594 3.81500 3.87656 4.14582 4.21598 4.27713 4.32000 4.40197 4.61490 4.71406 4.74680 4.75614 4.85951 4.92039 4.94743 4.98367 5.04620 5.10966 5.26054 5.29404 5.35535 5.35962 5.49602 5.55909 5.65564 5.67559 6.28158 6.61550 7.27194 7.33138 8.10164 8.32764 9.27765 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.039222 B = 0.002901 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.722199 B = 9648.220271 C =10036.480544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.144 3.856 11 C -0.135 4.135 12 C -0.102 4.102 13 C 0.141 3.859 14 N -0.716 5.716 15 C 0.541 3.459 16 O -0.589 6.589 17 C -0.215 4.215 18 C -0.071 4.071 19 C -0.097 4.097 20 C -0.133 4.133 21 C -0.119 4.119 22 C -0.153 4.153 23 H 0.251 0.749 24 H 0.374 0.626 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.412 0.588 32 H 0.157 0.843 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 -19.987 -11.819 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.034 3.966 11 C -0.174 4.174 12 C -0.121 4.121 13 C 0.018 3.982 14 N -0.367 5.367 15 C 0.331 3.669 16 O -0.472 6.472 17 C -0.235 4.235 18 C -0.073 4.073 19 C -0.134 4.134 20 C -0.170 4.170 21 C -0.155 4.155 22 C -0.194 4.194 23 H 0.060 0.940 24 H 0.206 0.794 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.248 0.752 32 H 0.174 0.826 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.895 -20.513 -11.344 23.517 hybrid contribution -0.108 1.645 0.089 1.651 sum -2.003 -18.868 -11.254 22.060 Atomic orbital electron populations 1.69797 1.06572 1.26185 1.59424 1.25557 0.96392 1.01078 1.03709 0.85215 0.77196 0.79185 0.78185 1.20390 1.22223 1.20441 1.19641 0.91525 0.85200 1.41221 0.90581 1.42297 1.05323 1.00544 1.87631 1.21417 0.95058 0.84909 0.95186 1.23346 0.99982 0.98666 0.95402 1.22491 0.98371 0.93636 0.97614 1.21261 0.98041 0.95508 0.83413 1.45918 1.62985 1.08382 1.19370 1.18960 0.78030 0.82755 0.87109 1.90730 1.53761 1.38538 1.64141 1.21716 1.08346 0.98387 0.95051 1.23937 0.91225 0.94275 0.97864 1.22405 1.01054 0.96053 0.93879 1.22775 1.00755 0.99087 0.94426 1.22391 1.02538 0.92498 0.98113 1.23733 0.97258 0.99181 0.99181 0.93982 0.79350 0.92179 0.92338 0.87710 0.90018 0.92147 0.91674 0.75234 0.82590 0.86365 0.88964 0.88478 0.89695 0.92164 0.88032 0.89196 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.76 13.06 21.65 0.28 -58.47 16 2 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.24 -13.44 9.97 84.03 0.84 -12.61 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.72 -35.76 5.31 -320.14 -1.70 -37.45 16 10 C 0.14 5.55 4.57 45.58 0.21 5.76 16 11 C -0.13 -4.19 7.39 31.12 0.23 -3.96 16 12 C -0.10 -3.00 3.62 -10.27 -0.04 -3.03 16 13 C 0.14 3.76 5.50 86.38 0.47 4.24 16 14 N -0.72 -17.76 5.55 -466.70 -2.59 -20.35 16 15 C 0.54 14.73 7.76 86.57 0.67 15.40 16 16 O -0.59 -20.13 15.14 -4.07 -0.06 -20.19 16 17 C -0.21 -4.43 10.03 23.43 0.23 -4.19 16 18 C -0.07 -1.32 6.92 -17.17 -0.12 -1.44 16 19 C -0.10 -1.08 7.95 30.16 0.24 -0.84 16 20 C -0.13 -1.57 8.18 31.04 0.25 -1.31 16 21 C -0.12 -2.19 7.01 30.16 0.21 -1.98 16 22 C -0.15 -4.94 7.44 31.18 0.23 -4.71 16 23 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 24 H 0.37 19.88 7.90 -92.71 -0.73 19.15 16 25 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.10 2.70 8.10 -2.39 -0.02 2.69 16 28 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.77 7.88 -2.38 -0.02 1.75 16 31 H 0.41 8.69 8.46 -92.71 -0.78 7.91 16 32 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.06 1.43 7.48 -2.39 -0.02 1.41 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 2.53 7.92 -2.39 -0.02 2.51 16 40 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -68.48 335.08 1.38 -67.09 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -0.48 Total: 34.10 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 3.91 Total: -12.49 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -4.01 Total: -116.28 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.06 Total: -20.19 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -68.48 1.38 -67.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100240431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.554 kcal (2) G-P(sol) polarization free energy of solvation -68.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds