Wall clock time and date at job start Sun Mar 29 2020 23:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46761 * 2 1 4 4 C 1.52991 * 109.47550 * 240.00243 * 2 1 3 5 5 O 1.42903 * 109.47131 * 304.99767 * 4 2 1 6 6 C 1.42899 * 114.00342 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47103 * 180.02562 * 6 5 4 8 8 C 1.38235 * 119.99808 * 89.99842 * 7 6 5 9 9 C 1.38243 * 119.99602 * 179.97438 * 8 7 6 10 10 C 1.38231 * 120.00070 * 0.07188 * 9 8 7 11 11 C 1.38234 * 119.99892 * 359.90902 * 10 9 8 12 12 C 1.38230 * 119.99865 * 269.97588 * 7 6 5 13 13 O 1.42900 * 109.47036 * 119.99647 * 2 1 3 14 14 C 1.42895 * 114.00386 * 270.00139 * 13 2 1 15 15 C 1.53000 * 109.47394 * 180.02562 * 14 13 2 16 16 C 1.50702 * 109.47022 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99688 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99733 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00042 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46735 * 90.00311 * 20 18 16 22 22 H 1.48494 * 109.47096 * 209.99867 * 20 18 16 23 23 H 1.48501 * 109.47190 * 330.00620 * 20 18 16 24 24 H 1.08995 * 109.47241 * 299.99651 * 1 2 3 25 25 H 1.08994 * 109.47416 * 60.00224 * 1 2 3 26 26 H 1.09003 * 109.46761 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47303 * 184.99975 * 4 2 1 28 28 H 1.08994 * 109.47466 * 64.99431 * 4 2 1 29 29 H 1.08993 * 109.47528 * 59.99500 * 6 5 4 30 30 H 1.09001 * 109.46686 * 299.99411 * 6 5 4 31 31 H 1.08000 * 120.00616 * 359.70324 * 8 7 6 32 32 H 1.08001 * 119.99556 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.99633 * 179.97438 * 10 9 8 34 34 H 1.07999 * 119.99751 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.00371 * 0.02562 * 12 7 6 36 36 H 1.08998 * 109.47638 * 300.00571 * 14 13 2 37 37 H 1.09009 * 109.47337 * 60.00010 * 14 13 2 38 38 H 1.09001 * 109.47123 * 300.00206 * 15 14 13 39 39 H 1.08998 * 109.47093 * 60.00099 * 15 14 13 40 40 H 0.97000 * 119.99900 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 8 1.4703 -2.0303 -1.3094 6 6 1.8847 -2.7929 -2.4447 7 6 1.2263 -4.1480 -2.4070 8 6 0.0004 -4.3379 -3.0168 9 6 -0.6033 -5.5811 -2.9827 10 6 0.0184 -6.6338 -2.3376 11 6 1.2445 -6.4439 -1.7282 12 6 1.8486 -5.2010 -1.7631 13 8 2.0063 -0.6736 1.1668 14 6 2.2000 0.1830 2.2941 15 6 2.7090 -0.6405 3.4789 16 6 2.9127 0.2628 4.6679 17 1 2.7007 1.3186 4.5865 18 6 3.3707 -0.2587 5.8593 19 7 3.5489 0.5297 6.8967 20 14 3.7379 -2.0848 5.9998 21 1 5.1550 -2.3344 5.6323 22 1 3.5029 -2.5310 7.3965 23 1 2.8481 -2.8408 5.0821 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7993 -1.2055 28 1 1.7517 -0.1583 -2.1369 29 1 2.9677 -2.9140 -2.4255 30 1 1.5933 -2.2731 -3.3574 31 1 -0.4879 -3.5141 -3.5161 32 1 -1.5613 -5.7294 -3.4588 33 1 -0.4534 -7.6049 -2.3106 34 1 1.7304 -7.2665 -1.2245 35 1 2.8064 -5.0526 -1.2867 36 1 2.9318 0.9514 2.0451 37 1 1.2537 0.6547 2.5589 38 1 1.9775 -1.4092 3.7281 39 1 3.6554 -1.1119 3.2139 40 1 3.8707 0.1628 7.7350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205630783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:35 Heat of formation + Delta-G solvation = -80.071457 kcal Electronic energy + Delta-G solvation = -19191.236577 eV Core-core repulsion = 16163.798128 eV Total energy + Delta-G solvation = -3027.438449 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.51851 -38.36510 -36.93022 -33.40507 -32.41851 -31.31640 -31.04642 -29.82215 -26.85716 -25.62398 -24.56565 -22.73084 -21.47074 -20.94359 -20.53437 -17.25277 -17.07628 -16.52850 -16.16378 -15.69012 -15.33384 -14.93220 -14.73220 -14.42172 -14.05287 -13.58082 -13.48443 -12.98317 -12.73348 -12.68572 -12.43996 -12.13875 -12.04437 -11.59125 -11.25236 -11.18492 -11.12917 -10.94535 -10.50127 -10.25656 -9.93034 -9.77089 -9.59880 -9.21877 -9.05994 -8.98823 -8.87873 -8.52511 -6.05085 -4.04209 1.12034 1.26221 3.34857 3.41604 3.43050 3.49923 4.00965 4.21853 4.47650 4.65494 4.69020 4.85305 4.95365 5.02439 5.11976 5.20653 5.23617 5.29813 5.37390 5.41436 5.46650 5.50041 5.75782 5.81436 5.88626 5.89352 6.05444 6.16860 6.28671 6.29477 6.35034 6.45846 6.51044 6.72714 6.83139 7.13539 7.22206 7.42957 7.72996 7.98455 8.50258 8.97152 9.56842 11.07856 Molecular weight = 264.15amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.003915 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.889775 B = 7150.041282 C = 8196.757291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.066 3.934 5 O -0.365 6.365 6 C 0.100 3.900 7 C -0.086 4.086 8 C -0.100 4.100 9 C -0.126 4.126 10 C -0.117 4.117 11 C -0.123 4.123 12 C -0.096 4.096 13 O -0.380 6.380 14 C 0.074 3.926 15 C -0.009 4.009 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.262 1.262 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.024 0.976 39 H 0.019 0.981 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 -9.421 -23.198 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.029 3.971 3 H 0.087 0.913 4 C -0.010 4.010 5 O -0.284 6.284 6 C 0.024 3.976 7 C -0.087 4.087 8 C -0.118 4.118 9 C -0.144 4.144 10 C -0.135 4.135 11 C -0.141 4.141 12 C -0.114 4.114 13 O -0.299 6.299 14 C -0.002 4.002 15 C -0.046 4.046 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.187 1.187 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.877 -9.677 -22.855 25.506 hybrid contribution 0.349 -0.447 0.086 0.574 sum -5.528 -10.125 -22.769 25.525 Atomic orbital electron populations 1.22164 0.95889 1.03258 1.01317 1.22017 0.94313 0.94849 0.85955 0.91326 1.22666 0.97729 0.83903 0.96728 1.88085 1.69659 1.26242 1.44385 1.21287 0.97757 0.89191 0.89405 1.19625 0.95657 0.94314 0.99057 1.21050 0.94357 0.97219 0.99205 1.21128 0.99976 0.93154 1.00168 1.21185 0.95513 0.99003 0.97832 1.21172 0.95838 0.97331 0.99805 1.21135 1.00320 0.92599 0.97324 1.88026 1.86069 1.35953 1.19876 1.22685 0.98533 0.93201 0.85738 1.19523 0.96486 0.96552 0.92061 1.20954 1.44922 0.96109 0.94087 0.90965 1.24955 0.94719 0.98019 0.95509 1.69906 1.46488 1.35456 1.02258 0.86754 0.79295 0.85928 0.77287 1.20178 1.21316 1.18688 0.92406 0.92597 0.91063 0.92635 0.92550 0.92530 0.92811 0.86051 0.86045 0.86124 0.85900 0.85747 0.94231 0.94104 0.95728 0.96270 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.33 37.16 0.35 -2.03 16 2 C 0.09 1.33 3.13 -26.74 -0.08 1.24 16 3 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 4 C 0.07 0.86 5.81 37.15 0.22 1.07 16 5 O -0.36 -5.30 9.41 -40.08 -0.38 -5.68 16 6 C 0.10 1.12 6.06 36.01 0.22 1.34 16 7 C -0.09 -1.01 5.51 -104.63 -0.58 -1.59 16 8 C -0.10 -1.05 9.70 -39.58 -0.38 -1.44 16 9 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 10 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 11 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 12 C -0.10 -1.11 9.70 -39.59 -0.38 -1.50 16 13 O -0.38 -7.65 9.95 -40.08 -0.40 -8.05 16 14 C 0.07 1.61 5.69 37.16 0.21 1.82 16 15 C -0.01 -0.22 4.41 -27.88 -0.12 -0.35 16 16 C -0.52 -15.33 9.66 -34.44 -0.33 -15.67 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 20 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 24 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.11 7.56 -51.93 -0.39 0.71 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 37 H 0.04 0.86 7.87 -51.92 -0.41 0.45 16 38 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 39 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -33.26 337.28 -8.38 -41.64 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.61 Total: -3.44 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.18 Total: -19.91 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.77 Total: -27.40 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.78 Total: -13.73 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.26 -8.38 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205630783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.428 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds