Wall clock time and date at job start Sun Mar 29 2020 23:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35903 * 116.99522 * 179.97438 * 3 2 1 5 5 C 1.38725 * 120.05861 * 359.72783 * 4 3 2 6 6 C 1.38145 * 119.94387 * 179.74053 * 5 4 3 7 7 C 1.38270 * 120.05493 * 0.50964 * 6 5 4 8 8 C 1.50696 * 119.94234 * 179.73878 * 7 6 5 9 9 H 1.09000 * 109.46611 * 160.02090 * 8 7 6 10 10 C 1.52991 * 109.47774 * 280.02415 * 8 7 6 11 11 O 1.42904 * 109.46889 * 40.02978 * 8 7 6 12 12 C 1.42900 * 113.99836 * 149.99576 * 11 8 7 13 13 C 1.53002 * 109.46976 * 179.97438 * 12 11 8 14 14 C 1.50706 * 109.46737 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00416 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99657 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99994 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00107 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47446 * 59.99418 * 18 16 14 20 20 H 1.48494 * 109.47232 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46602 * 299.99775 * 18 16 14 22 22 C 1.38261 * 120.10772 * 359.76899 * 7 6 5 23 23 C 1.38138 * 120.06029 * 359.97438 * 22 7 6 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 28 28 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 29 29 H 1.08000 * 120.02603 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.97031 * 180.27907 * 6 5 4 31 31 H 1.08996 * 109.47545 * 179.97438 * 10 8 7 32 32 H 1.09005 * 109.47237 * 300.00629 * 10 8 7 33 33 H 1.09009 * 109.47219 * 60.00297 * 10 8 7 34 34 H 1.08997 * 109.47640 * 299.99622 * 12 11 8 35 35 H 1.09007 * 109.47399 * 59.99876 * 12 11 8 36 36 H 1.08999 * 109.46959 * 299.99824 * 13 12 11 37 37 H 1.09000 * 109.47312 * 60.00059 * 13 12 11 38 38 H 0.96998 * 119.99849 * 180.02562 * 17 16 14 39 39 H 1.08006 * 119.96950 * 179.97438 * 22 7 6 40 40 H 1.07997 * 120.03023 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6098 0.0019 7 6 6.0962 1.8880 0.0014 8 6 7.5902 2.0855 0.0021 9 1 7.8239 3.0904 -0.3495 10 6 8.1281 1.9042 1.4228 11 8 8.1979 1.1246 -0.8637 12 6 9.4091 1.5757 -1.4733 13 6 9.9689 0.4720 -2.3730 14 6 11.2466 0.9475 -3.0154 15 1 11.6220 1.9376 -2.8029 16 6 11.9363 0.1184 -3.8745 17 7 11.4789 -1.0871 -4.1337 18 14 13.5204 0.7074 -4.6703 19 1 14.5122 1.0357 -3.6150 20 1 14.0630 -0.3632 -5.5446 21 1 13.2447 1.9184 -5.4844 22 6 5.2549 2.9852 0.0011 23 6 3.8851 2.8069 0.0006 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.7885 -0.5725 0.0116 30 1 6.2281 -0.2458 0.0022 31 1 9.2087 2.0465 1.4231 32 1 7.6644 2.6371 2.0832 33 1 7.8944 0.8992 1.7743 34 1 9.2061 2.4642 -2.0712 35 1 10.1375 1.8173 -0.6992 36 1 10.1721 -0.4162 -1.7749 37 1 9.2408 0.2300 -3.1472 38 1 11.9643 -1.6705 -4.7378 39 1 5.6692 3.9827 0.0011 40 1 3.2284 3.6643 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:56 Heat of formation + Delta-G solvation = -98.120273 kcal Electronic energy + Delta-G solvation = -19123.392228 eV Core-core repulsion = 16095.171123 eV Total energy + Delta-G solvation = -3028.221104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19684 -39.62333 -38.08718 -35.44830 -33.65210 -32.51370 -31.91903 -31.30381 -29.36635 -26.73178 -25.01101 -24.47082 -23.05489 -22.50771 -21.66739 -19.25405 -18.69166 -17.45896 -17.18230 -17.04229 -16.51898 -16.35468 -16.23508 -15.46492 -14.87078 -14.44118 -14.38428 -14.30314 -14.20968 -14.08894 -13.62672 -13.30583 -13.14707 -12.93168 -12.86471 -12.66588 -12.61398 -12.37825 -12.16598 -11.80901 -11.65976 -11.58897 -11.42673 -11.33820 -10.65261 -10.37542 -9.96290 -9.08865 -8.23416 -6.36716 0.36449 0.41454 1.40916 1.45160 1.53086 2.24900 2.37661 2.69995 2.97732 3.10325 3.82854 3.86202 3.93300 4.04481 4.14285 4.21280 4.28983 4.35964 4.44085 4.47136 4.48368 4.51882 4.65528 4.78681 4.86585 4.92357 4.93911 4.96417 5.08393 5.19144 5.25124 5.31473 5.37116 5.41495 5.58916 5.62268 5.75837 5.78857 6.12511 6.43480 6.50192 6.79356 7.33101 8.89517 Molecular weight = 264.15amu Principal moments of inertia in cm(-1) A = 0.029985 B = 0.003208 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.586043 B = 8726.856091 C = 9257.374586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.329 6.329 4 C 0.118 3.882 5 C -0.214 4.214 6 C -0.069 4.069 7 C -0.131 4.131 8 C 0.119 3.881 9 H 0.076 0.924 10 C -0.161 4.161 11 O -0.404 6.404 12 C 0.087 3.913 13 C 0.029 3.971 14 C -0.546 4.546 15 H 0.068 0.932 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.283 1.283 21 H -0.264 1.264 22 C -0.071 4.071 23 C -0.158 4.158 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.141 0.859 30 H 0.116 0.884 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.048 0.952 36 H -0.007 1.007 37 H -0.010 1.010 38 H 0.266 0.734 39 H 0.154 0.846 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.682 6.473 11.379 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.073 3.927 5 C -0.233 4.233 6 C -0.087 4.087 7 C -0.132 4.132 8 C 0.062 3.938 9 H 0.094 0.906 10 C -0.219 4.219 11 O -0.324 6.324 12 C 0.011 3.989 13 C -0.008 4.008 14 C -0.584 4.584 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.798 3.202 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.189 1.189 22 C -0.088 4.088 23 C -0.177 4.177 24 H 0.117 0.883 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.158 0.842 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.074 0.926 39 H 0.171 0.829 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.896 6.267 11.257 22.871 hybrid contribution 1.041 -0.368 -0.569 1.242 sum -17.855 5.900 10.688 21.630 Atomic orbital electron populations 1.21796 0.91104 1.04169 1.03336 1.23058 0.97138 0.80934 1.02031 1.86039 1.18561 1.31062 1.88641 1.19177 0.82591 0.94502 0.96469 1.21378 0.93756 0.98991 1.09132 1.20869 0.94533 0.97375 0.95914 1.19822 0.94439 0.94077 1.04821 1.20982 0.89067 0.92712 0.91035 0.90591 1.22212 1.01333 1.02858 0.95466 1.87931 1.39750 1.42050 1.62677 1.22493 0.84539 0.97250 0.94649 1.18915 0.94671 0.93830 0.93367 1.21457 1.08106 1.01403 1.27389 0.91340 1.26062 1.01974 0.94837 0.97017 1.70126 1.41261 1.09086 1.36809 0.85362 0.78361 0.78058 0.78432 1.18777 1.20813 1.18885 1.21027 0.91990 0.99017 0.96812 1.20617 0.95197 0.95237 1.06623 0.88334 0.91465 0.91815 0.91226 0.91830 0.84165 0.86609 0.92321 0.89477 0.92719 0.93785 0.93415 0.98831 0.99113 0.92566 0.82857 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.04 0.70 5.46 71.98 0.39 1.10 16 3 O -0.33 -7.46 10.14 -92.46 -0.94 -8.40 16 4 C 0.12 2.95 6.69 22.50 0.15 3.10 16 5 C -0.21 -5.57 9.04 22.36 0.20 -5.37 16 6 C -0.07 -2.07 9.35 22.26 0.21 -1.86 16 7 C -0.13 -3.80 4.97 -19.85 -0.10 -3.90 16 8 C 0.12 3.69 2.92 29.84 0.09 3.77 16 9 H 0.08 2.12 7.64 -2.39 -0.02 2.10 16 10 C -0.16 -4.26 9.50 71.98 0.68 -3.57 16 11 O -0.40 -16.66 9.31 -148.98 -1.39 -18.04 16 12 C 0.09 3.84 5.69 71.98 0.41 4.25 16 13 C 0.03 1.65 5.34 29.85 0.16 1.81 16 14 C -0.55 -31.60 9.11 25.60 0.23 -31.36 16 15 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 17 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 18 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 22 C -0.07 -1.68 9.66 22.25 0.21 -1.46 16 23 C -0.16 -3.67 9.99 22.36 0.22 -3.44 16 24 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 1.02 7.65 -2.39 -0.02 1.00 16 28 H 0.06 1.02 7.68 -2.39 -0.02 1.00 16 29 H 0.14 3.05 6.30 -2.91 -0.02 3.04 16 30 H 0.12 3.76 7.77 -2.91 -0.02 3.74 16 31 H 0.06 1.57 7.87 -2.39 -0.02 1.55 16 32 H 0.09 1.80 8.14 -2.38 -0.02 1.79 16 33 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 35 H 0.05 1.98 7.87 -2.38 -0.02 1.96 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.15 2.75 8.03 -2.91 -0.02 2.73 16 40 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -69.23 337.06 5.05 -64.18 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.99 Total: 11.24 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 4.07 Total: -37.47 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.28 Total: -57.78 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -2.32 Total: -26.44 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.23 5.05 -64.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.943 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds