Wall clock time and date at job start Sun Mar 29 2020 23:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47272 * 2 1 4 4 C 1.35896 * 116.99948 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05725 * 180.02562 * 4 3 2 6 6 C 1.38152 * 119.94506 * 179.97438 * 5 4 3 7 7 C 1.38260 * 120.05332 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.94217 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47169 * 24.99936 * 8 7 6 10 10 C 1.53002 * 109.47073 * 265.00256 * 8 7 6 11 11 O 1.42898 * 109.47250 * 145.00158 * 8 7 6 12 12 C 1.42906 * 113.99821 * 210.00344 * 11 8 7 13 13 C 1.53006 * 109.46748 * 179.97438 * 12 11 8 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47325 * 59.99531 * 18 16 14 20 20 H 1.48496 * 109.47425 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47183 * 299.99726 * 18 16 14 22 22 C 1.38263 * 120.11709 * 0.27763 * 7 6 5 23 23 C 1.38156 * 120.05030 * 359.44983 * 22 7 6 24 24 H 1.08998 * 109.47278 * 300.00577 * 1 2 3 25 25 H 1.09003 * 109.46812 * 60.00107 * 1 2 3 26 26 H 1.08993 * 109.47546 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47278 * 239.99423 * 2 1 3 28 28 H 1.09003 * 109.46812 * 119.99893 * 2 1 3 29 29 H 1.08003 * 120.02636 * 359.95054 * 5 4 3 30 30 H 1.08004 * 119.96933 * 180.02562 * 6 5 4 31 31 H 1.08995 * 109.47093 * 59.99942 * 10 8 7 32 32 H 1.09006 * 109.46773 * 179.97438 * 10 8 7 33 33 H 1.08996 * 109.47002 * 299.99559 * 10 8 7 34 34 H 1.09000 * 109.47490 * 59.99859 * 12 11 8 35 35 H 1.09001 * 109.47232 * 299.99213 * 12 11 8 36 36 H 1.08993 * 109.46955 * 299.99993 * 13 12 11 37 37 H 1.09000 * 109.47050 * 59.99822 * 13 12 11 38 38 H 0.96992 * 120.00032 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.97715 * 179.70871 * 22 7 6 40 40 H 1.08000 * 120.02565 * 180.27674 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8067 0.0011 6 6 5.2552 2.9850 0.0022 7 6 6.0962 1.8876 0.0032 8 6 7.5902 2.0850 0.0050 9 1 7.8280 3.0560 0.4396 10 6 8.1140 2.0271 -1.4314 11 8 8.2061 1.0533 0.7785 12 6 9.4235 1.4506 1.4128 13 6 9.9910 0.2739 2.2094 14 6 11.2751 0.6927 2.8778 15 1 11.6492 1.6974 2.7472 16 6 11.9729 -0.2071 3.6553 17 7 11.5176 -1.4307 3.8139 18 14 13.5642 0.3121 4.4844 19 1 13.2962 1.4476 5.4030 20 1 14.1152 -0.8299 5.2574 21 1 14.5462 0.7315 3.4523 22 6 5.5690 0.6095 -0.0026 23 6 4.1997 0.4259 0.0020 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2286 3.6642 0.0003 30 1 5.6694 3.9824 0.0031 31 1 7.6443 2.8141 -2.0214 32 1 9.1946 2.1704 -1.4301 33 1 7.8764 1.0562 -1.8659 34 1 9.2267 2.2841 2.0871 35 1 10.1443 1.7583 0.6553 36 1 9.2701 -0.0334 2.9669 37 1 10.1877 -0.5599 1.5355 38 1 12.0083 -2.0636 4.3611 39 1 6.2281 -0.2461 -0.0065 40 1 3.7884 -0.5727 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205631191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:00 Heat of formation + Delta-G solvation = -80.363343 kcal Electronic energy + Delta-G solvation = -19126.358758 eV Core-core repulsion = 16098.907652 eV Total energy + Delta-G solvation = -3027.451106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21529 -38.41610 -36.82794 -33.42872 -32.42658 -31.51121 -30.87454 -29.46967 -28.32815 -24.77462 -24.13958 -23.30129 -21.87371 -20.80597 -20.53861 -18.32366 -16.74186 -16.26211 -16.11430 -15.81858 -15.06758 -14.76972 -14.56058 -14.34701 -13.76793 -13.51719 -13.43169 -12.98132 -12.88689 -12.66010 -12.34682 -12.23175 -11.95188 -11.87057 -11.64142 -11.07894 -11.01811 -10.82336 -10.78026 -10.59175 -10.34444 -10.26162 -9.48118 -9.20523 -8.95223 -8.87801 -8.34841 -8.05003 -6.02600 -4.06206 1.38346 1.48101 3.07370 3.32472 3.36665 3.38805 3.78802 4.23824 4.49626 4.66772 4.68676 4.87847 4.98884 4.99597 5.01863 5.22592 5.33366 5.36926 5.43959 5.50310 5.51152 5.55217 5.72064 5.75304 5.86932 5.97907 6.10159 6.24325 6.27771 6.33589 6.39764 6.50069 6.72674 6.78900 6.90532 7.37145 7.56703 7.80239 7.84408 8.12887 8.36868 9.00231 9.57377 11.09060 Molecular weight = 264.15amu Principal moments of inertia in cm(-1) A = 0.029665 B = 0.003221 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.649061 B = 8689.747722 C = 9257.052439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.320 6.320 4 C 0.122 3.878 5 C -0.156 4.156 6 C -0.076 4.076 7 C -0.113 4.113 8 C 0.126 3.874 9 H 0.063 0.937 10 C -0.166 4.166 11 O -0.382 6.382 12 C 0.069 3.931 13 C 0.026 3.974 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.049 4.049 23 C -0.210 4.210 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.134 0.866 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.468 5.602 -10.136 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.234 6.234 4 C 0.077 3.923 5 C -0.174 4.174 6 C -0.094 4.094 7 C -0.114 4.114 8 C 0.068 3.932 9 H 0.081 0.919 10 C -0.224 4.224 11 O -0.302 6.302 12 C -0.006 4.006 13 C -0.011 4.011 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.530 5.530 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.067 4.067 23 C -0.229 4.229 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.152 0.848 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.661 5.376 -10.025 21.855 hybrid contribution 1.106 0.192 0.504 1.230 sum -17.555 5.568 -9.521 20.732 Atomic orbital electron populations 1.21770 0.92886 1.02789 1.03390 1.22765 0.95684 0.82164 1.01562 1.86030 1.19325 1.29165 1.88906 1.18981 0.82000 0.94261 0.97012 1.20292 0.94919 0.94655 1.07571 1.20761 0.92049 0.98483 0.98070 1.19795 0.94853 0.93441 1.03272 1.20690 0.88489 0.92113 0.91943 0.91935 1.22250 1.01496 1.02359 0.96296 1.87959 1.39779 1.36567 1.65882 1.22922 0.83243 1.00092 0.94374 1.19054 0.95139 0.92314 0.94580 1.21021 1.06972 0.98054 1.30186 0.92621 1.24994 0.97949 0.94888 0.96454 1.69971 1.39291 1.04422 1.39350 0.86588 0.83400 0.78055 0.79547 1.20171 1.21194 1.20167 1.20890 0.93838 0.97615 0.94348 1.21262 0.94391 0.97884 1.09349 0.91564 0.91637 0.90422 0.92066 0.91928 0.85428 0.85453 0.92213 0.91985 0.91901 0.94695 0.94649 0.95797 0.95789 0.92803 0.84836 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.05 0.47 5.46 37.16 0.20 0.68 16 3 O -0.32 -3.85 10.14 -19.41 -0.20 -4.05 16 4 C 0.12 1.60 6.69 -39.22 -0.26 1.34 16 5 C -0.16 -1.95 9.99 -39.43 -0.39 -2.34 16 6 C -0.08 -0.96 9.67 -39.60 -0.38 -1.35 16 7 C -0.11 -1.68 5.00 -104.60 -0.52 -2.20 16 8 C 0.13 1.99 2.93 -27.88 -0.08 1.91 16 9 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 10 C -0.17 -2.28 9.51 37.16 0.35 -1.93 16 11 O -0.38 -7.72 9.14 -35.23 -0.32 -8.04 16 12 C 0.07 1.52 5.69 37.16 0.21 1.74 16 13 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 14 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 18 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.05 -0.73 9.34 -39.60 -0.37 -1.10 16 23 C -0.21 -2.78 9.04 -39.43 -0.36 -3.13 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 29 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.04 0.74 7.87 -51.93 -0.41 0.33 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.13 2.07 7.63 -52.49 -0.40 1.67 16 40 H 0.13 1.39 6.30 -52.49 -0.33 1.06 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -31.65 336.87 -8.02 -39.67 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -6.51 Total: -2.78 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -1.78 Total: -20.17 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.52 Total: -12.09 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.65 -8.02 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.695 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds