Wall clock time and date at job start Sun Mar 29 2020 23:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47272 * 2 1 4 4 C 1.35896 * 116.99948 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05725 * 180.02562 * 4 3 2 6 6 C 1.38152 * 119.94506 * 179.97438 * 5 4 3 7 7 C 1.38260 * 120.05332 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.94217 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47169 * 24.99936 * 8 7 6 10 10 C 1.53002 * 109.47073 * 265.00256 * 8 7 6 11 11 O 1.42898 * 109.47250 * 145.00158 * 8 7 6 12 12 C 1.42906 * 113.99821 * 210.00344 * 11 8 7 13 13 C 1.53006 * 109.46748 * 179.97438 * 12 11 8 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47325 * 59.99531 * 18 16 14 20 20 H 1.48496 * 109.47425 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47183 * 299.99726 * 18 16 14 22 22 C 1.38263 * 120.11709 * 0.27763 * 7 6 5 23 23 C 1.38156 * 120.05030 * 359.44983 * 22 7 6 24 24 H 1.08998 * 109.47278 * 300.00577 * 1 2 3 25 25 H 1.09003 * 109.46812 * 60.00107 * 1 2 3 26 26 H 1.08993 * 109.47546 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47278 * 239.99423 * 2 1 3 28 28 H 1.09003 * 109.46812 * 119.99893 * 2 1 3 29 29 H 1.08003 * 120.02636 * 359.95054 * 5 4 3 30 30 H 1.08004 * 119.96933 * 180.02562 * 6 5 4 31 31 H 1.08995 * 109.47093 * 59.99942 * 10 8 7 32 32 H 1.09006 * 109.46773 * 179.97438 * 10 8 7 33 33 H 1.08996 * 109.47002 * 299.99559 * 10 8 7 34 34 H 1.09000 * 109.47490 * 59.99859 * 12 11 8 35 35 H 1.09001 * 109.47232 * 299.99213 * 12 11 8 36 36 H 1.08993 * 109.46955 * 299.99993 * 13 12 11 37 37 H 1.09000 * 109.47050 * 59.99822 * 13 12 11 38 38 H 0.96992 * 120.00032 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.97715 * 179.70871 * 22 7 6 40 40 H 1.08000 * 120.02565 * 180.27674 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8067 0.0011 6 6 5.2552 2.9850 0.0022 7 6 6.0962 1.8876 0.0032 8 6 7.5902 2.0850 0.0050 9 1 7.8280 3.0560 0.4396 10 6 8.1140 2.0271 -1.4314 11 8 8.2061 1.0533 0.7785 12 6 9.4235 1.4506 1.4128 13 6 9.9910 0.2739 2.2094 14 6 11.2751 0.6927 2.8778 15 1 11.6492 1.6974 2.7472 16 6 11.9729 -0.2071 3.6553 17 7 11.5176 -1.4307 3.8139 18 14 13.5642 0.3121 4.4844 19 1 13.2962 1.4476 5.4030 20 1 14.1152 -0.8299 5.2574 21 1 14.5462 0.7315 3.4523 22 6 5.5690 0.6095 -0.0026 23 6 4.1997 0.4259 0.0020 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2286 3.6642 0.0003 30 1 5.6694 3.9824 0.0031 31 1 7.6443 2.8141 -2.0214 32 1 9.1946 2.1704 -1.4301 33 1 7.8764 1.0562 -1.8659 34 1 9.2267 2.2841 2.0871 35 1 10.1443 1.7583 0.6553 36 1 9.2701 -0.0334 2.9669 37 1 10.1877 -0.5599 1.5355 38 1 12.0083 -2.0636 4.3611 39 1 6.2281 -0.2461 -0.0065 40 1 3.7884 -0.5727 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:59 Heat of formation + Delta-G solvation = -98.090181 kcal Electronic energy + Delta-G solvation = -19127.127452 eV Core-core repulsion = 16098.907652 eV Total energy + Delta-G solvation = -3028.219800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.19560 -39.62542 -38.08590 -35.44878 -33.64932 -32.52128 -31.92045 -31.29202 -29.37068 -26.73465 -25.01870 -24.44247 -23.06201 -22.51819 -21.66084 -19.25262 -18.69194 -17.46111 -17.17684 -17.04431 -16.52369 -16.34798 -16.23161 -15.47484 -14.85566 -14.44598 -14.38899 -14.29445 -14.20097 -14.10174 -13.63589 -13.30292 -13.15521 -12.93582 -12.86320 -12.66107 -12.61380 -12.37800 -12.16908 -11.80677 -11.66794 -11.57657 -11.42819 -11.33727 -10.65441 -10.38121 -9.96040 -9.07992 -8.23467 -6.36749 0.36655 0.41843 1.40894 1.45109 1.53028 2.24996 2.37616 2.71212 2.95152 3.10279 3.83224 3.86325 3.93435 4.04334 4.14643 4.21215 4.29539 4.35853 4.44083 4.47313 4.48658 4.51569 4.65958 4.78768 4.86740 4.92360 4.93844 4.96355 5.08699 5.19152 5.25311 5.31704 5.37003 5.41920 5.58929 5.61993 5.75971 5.79070 6.12534 6.43512 6.50260 6.79313 7.33068 8.89477 Molecular weight = 264.15amu Principal moments of inertia in cm(-1) A = 0.029665 B = 0.003221 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.649061 B = 8689.747722 C = 9257.052439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.328 6.328 4 C 0.117 3.883 5 C -0.158 4.158 6 C -0.070 4.070 7 C -0.131 4.131 8 C 0.119 3.881 9 H 0.077 0.923 10 C -0.161 4.161 11 O -0.404 6.404 12 C 0.087 3.913 13 C 0.029 3.971 14 C -0.546 4.546 15 H 0.068 0.932 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.975 3.025 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.263 1.263 22 C -0.070 4.070 23 C -0.214 4.214 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.048 0.952 36 H -0.009 1.009 37 H -0.007 1.007 38 H 0.266 0.734 39 H 0.115 0.885 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.777 7.473 -10.433 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.072 3.928 5 C -0.176 4.176 6 C -0.088 4.088 7 C -0.131 4.131 8 C 0.062 3.938 9 H 0.095 0.905 10 C -0.218 4.218 11 O -0.324 6.324 12 C 0.011 3.989 13 C -0.008 4.008 14 C -0.584 4.584 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.798 3.202 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.188 1.188 22 C -0.088 4.088 23 C -0.233 4.233 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.167 0.833 30 H 0.172 0.828 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.009 0.991 37 H 0.012 0.988 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.990 7.258 -10.340 22.808 hybrid contribution 1.051 -0.434 0.556 1.265 sum -17.939 6.824 -9.784 21.544 Atomic orbital electron populations 1.21793 0.91084 1.04165 1.03349 1.23054 0.97147 0.80948 1.02009 1.86034 1.18562 1.31037 1.88650 1.19175 0.82576 0.94502 0.96532 1.20622 0.95205 0.95205 1.06575 1.21012 0.91946 0.99004 0.96868 1.19829 0.94453 0.94066 1.04780 1.20977 0.89022 0.91403 0.92400 0.90549 1.22210 1.01405 1.02942 0.95287 1.87922 1.39088 1.38764 1.66627 1.22494 0.84371 0.97629 0.94428 1.18913 0.94649 0.93455 0.93758 1.21456 1.07604 0.98775 1.30516 0.91347 1.26059 1.02058 0.94726 0.97046 1.70125 1.41143 1.05829 1.40183 0.85362 0.78346 0.77914 0.78591 1.18891 1.20814 1.18781 1.20864 0.94502 0.97433 0.95998 1.21380 0.93763 0.98987 1.09142 0.91786 0.91463 0.88352 0.91285 0.91838 0.83253 0.82751 0.89406 0.92311 0.92788 0.93797 0.93400 0.99100 0.98831 0.92567 0.86712 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.04 0.71 5.46 71.98 0.39 1.10 16 3 O -0.33 -7.47 10.14 -92.38 -0.94 -8.40 16 4 C 0.12 2.94 6.69 22.51 0.15 3.09 16 5 C -0.16 -3.63 9.99 22.37 0.22 -3.40 16 6 C -0.07 -1.65 9.67 22.25 0.22 -1.44 16 7 C -0.13 -3.79 5.00 -19.85 -0.10 -3.89 16 8 C 0.12 3.68 2.93 29.85 0.09 3.77 16 9 H 0.08 2.13 7.69 -2.39 -0.02 2.11 16 10 C -0.16 -4.24 9.51 71.98 0.68 -3.56 16 11 O -0.40 -16.63 9.14 -148.98 -1.36 -17.99 16 12 C 0.09 3.84 5.69 71.98 0.41 4.25 16 13 C 0.03 1.66 5.34 29.85 0.16 1.81 16 14 C -0.55 -31.58 9.11 25.60 0.23 -31.35 16 15 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 17 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 18 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 C -0.07 -2.12 9.34 22.26 0.21 -1.92 16 23 C -0.21 -5.63 9.04 22.37 0.20 -5.43 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 1.02 7.66 -2.39 -0.02 1.01 16 28 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 29 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.57 7.87 -2.38 -0.02 1.55 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.85 8.09 -2.39 -0.02 1.83 16 35 H 0.05 1.98 7.87 -2.39 -0.02 1.97 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.11 3.82 7.63 -2.91 -0.02 3.80 16 40 H 0.14 3.09 6.30 -2.91 -0.02 3.08 16 Total: -1.00 -69.16 336.87 5.07 -64.08 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.99 Total: 11.28 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 4.07 Total: -37.49 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.28 Total: -57.75 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -2.30 Total: -26.40 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.16 5.07 -64.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.006 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds