Wall clock time and date at job start Sun Mar 29 2020 23:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47500 * 300.00771 * 3 2 1 6 6 H 1.48500 * 109.47272 * 60.00472 * 3 2 1 7 7 C 1.38814 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99415 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00007 * 176.88709 * 9 7 2 11 11 C 1.53008 * 115.55111 * 295.00209 * 10 9 7 12 12 N 1.46501 * 109.46784 * 324.36517 * 11 10 9 13 13 C 1.34773 * 119.99666 * 174.42621 * 12 11 10 14 14 O 1.21280 * 120.00394 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99790 * 179.97438 * 13 12 11 16 16 C 1.53888 * 113.58665 * 279.21363 * 15 13 12 17 17 C 1.53430 * 86.82584 * 220.45637 * 16 15 13 18 18 C 1.52451 * 128.60610 * 165.09827 * 17 16 15 19 19 C 1.52456 * 128.51862 * 245.01936 * 17 16 15 20 20 C 1.53261 * 87.71854 * 25.01614 * 17 16 15 21 21 C 1.53000 * 117.49814 * 149.33013 * 10 9 7 22 22 C 1.52999 * 117.49887 * 80.66932 * 10 9 7 23 23 H 0.96997 * 120.00046 * 359.97438 * 1 2 3 24 24 H 0.96998 * 119.99972 * 356.61039 * 9 7 2 25 25 H 1.08994 * 109.47039 * 84.36441 * 11 10 9 26 26 H 1.09000 * 109.46928 * 204.36593 * 11 10 9 27 27 H 0.96997 * 120.00131 * 354.41720 * 12 11 10 28 28 H 1.09005 * 112.83349 * 50.33087 * 15 13 12 29 29 H 1.09000 * 113.64687 * 334.92220 * 16 15 13 30 30 H 1.09004 * 113.64706 * 105.93589 * 16 15 13 31 31 H 1.09004 * 117.51087 * 224.95894 * 18 17 16 32 32 H 1.09003 * 117.52059 * 10.06572 * 18 17 16 33 33 H 1.09001 * 117.51547 * 349.79398 * 19 17 16 34 34 H 1.08997 * 117.51364 * 134.86736 * 19 17 16 35 35 H 1.09001 * 113.64710 * 220.48686 * 20 17 16 36 36 H 1.09005 * 113.72330 * 89.49067 * 20 17 16 37 37 H 1.08993 * 117.50048 * 359.97438 * 21 10 9 38 38 H 1.09004 * 117.49515 * 145.02157 * 21 10 9 39 39 H 1.09005 * 117.50138 * 214.97730 * 22 10 9 40 40 H 1.08996 * 117.50203 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0564 -3.6558 -0.0700 11 6 2.8312 -3.9007 -1.3665 12 7 2.0822 -3.3436 -2.4956 13 6 2.6251 -3.3418 -3.7291 14 8 3.7339 -3.8008 -3.9043 15 6 1.8545 -2.7692 -4.8907 16 6 0.8106 -3.7377 -5.4743 17 6 1.2454 -3.2374 -6.8581 18 6 0.9631 -3.8528 -8.2240 19 6 0.4317 -2.4574 -7.8845 20 6 2.5974 -2.8742 -6.2343 21 6 1.4315 -4.8702 0.6197 22 6 2.6627 -4.1937 1.2276 23 1 -0.4850 0.8400 0.0004 24 1 0.3569 -2.3889 0.0495 25 1 3.8063 -3.4179 -1.3037 26 1 2.9652 -4.9725 -1.5127 27 1 1.1955 -2.9763 -2.3554 28 1 1.4600 -1.7737 -4.6870 29 1 1.0414 -4.7881 -5.2969 30 1 -0.2169 -3.4793 -5.2182 31 1 1.7927 -3.9181 -8.9280 32 1 0.2420 -4.6690 -8.2694 33 1 -0.6389 -2.3560 -7.7066 34 1 0.9115 -1.6047 -8.3648 35 1 3.0004 -1.9246 -6.5864 36 1 3.3274 -3.6830 -6.2681 37 1 0.4768 -4.7258 1.1254 38 1 1.5727 -5.8437 0.1500 39 1 3.6134 -4.7225 1.1577 40 1 2.5182 -3.6042 2.1330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277170115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:48 Heat of formation + Delta-G solvation = 28.236800 kcal Electronic energy + Delta-G solvation = -20037.935069 eV Core-core repulsion = 17047.485970 eV Total energy + Delta-G solvation = -2990.449100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37284 -39.66263 -38.70733 -35.09140 -34.94737 -34.45639 -31.61901 -28.47089 -26.71508 -25.95011 -24.86643 -23.28316 -23.20058 -21.11595 -20.49546 -19.29756 -19.10680 -18.15165 -17.41798 -16.58693 -16.45099 -16.01233 -15.89504 -15.75564 -15.34243 -15.00098 -14.70355 -13.95994 -13.59213 -13.55186 -13.29837 -12.98995 -12.94174 -12.86086 -12.46400 -12.30112 -12.26283 -12.16212 -11.91882 -11.74314 -11.30388 -11.24944 -10.97619 -10.75943 -10.63020 -10.42996 -9.86465 -9.04144 -7.96085 -5.24537 1.43434 1.46642 1.54021 1.68614 2.33748 2.53171 2.88562 3.06099 3.39794 3.40873 3.57649 3.63986 3.70599 3.88604 3.89932 3.97138 4.16856 4.26769 4.41438 4.43387 4.74916 4.76237 4.80235 4.81985 4.84399 4.85408 4.86494 5.01262 5.03287 5.04959 5.14713 5.28506 5.31488 5.34108 5.39555 5.54914 5.63815 6.26644 6.71251 7.33095 7.34149 8.04042 8.29913 9.25878 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.005764 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.459535 B = 4856.432269 C = 5904.449720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.060 4.060 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.221 4.221 8 H 0.062 0.938 9 N -0.694 5.694 10 C 0.099 3.901 11 C 0.158 3.842 12 N -0.697 5.697 13 C 0.516 3.484 14 O -0.593 6.593 15 C -0.134 4.134 16 C -0.072 4.072 17 C -0.173 4.173 18 C -0.157 4.157 19 C -0.146 4.146 20 C -0.075 4.075 21 C -0.156 4.156 22 C -0.189 4.189 23 H 0.251 0.749 24 H 0.380 0.620 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.408 0.592 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 -9.284 -11.468 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.253 4.253 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.353 4.353 8 H 0.080 0.920 9 N -0.333 5.333 10 C 0.006 3.994 11 C 0.031 3.969 12 N -0.346 5.346 13 C 0.304 3.696 14 O -0.475 6.475 15 C -0.155 4.155 16 C -0.110 4.110 17 C -0.173 4.173 18 C -0.194 4.194 19 C -0.183 4.183 20 C -0.113 4.113 21 C -0.193 4.193 22 C -0.229 4.229 23 H 0.060 0.940 24 H 0.213 0.787 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.245 0.755 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.470 -9.456 -11.564 14.946 hybrid contribution -0.162 1.504 0.605 1.629 sum 0.308 -7.953 -10.959 13.544 Atomic orbital electron populations 1.69760 1.05947 1.25841 1.59431 1.25268 0.96147 0.99999 1.03851 0.85338 0.78083 0.81214 0.76716 1.20219 1.22031 1.22116 1.19286 0.90738 0.84638 1.40600 0.92011 1.41771 1.05047 0.99246 1.87196 1.20446 1.00108 0.87266 0.91532 1.20974 0.93866 0.97341 0.84707 1.45849 1.21216 1.60757 1.06811 1.20924 0.86050 0.78115 0.84537 1.90598 1.21718 1.49740 1.85464 1.22646 0.99185 1.01523 0.92178 1.22355 0.98142 0.98082 0.92418 1.22099 0.97498 1.06860 0.90854 1.22900 1.03499 0.96747 0.96223 1.22907 0.99889 0.95520 0.99939 1.22297 0.95071 1.02079 0.91821 1.23263 0.97342 0.95839 1.02872 1.23368 0.97771 1.03979 0.97771 0.93967 0.78656 0.94136 0.90666 0.75510 0.86876 0.89643 0.89514 0.88071 0.87660 0.87639 0.88002 0.90866 0.89865 0.89089 0.86389 0.87699 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.85 13.06 21.65 0.28 -54.57 16 2 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 3 Si 0.96 45.33 29.55 68.60 2.03 47.36 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.22 -11.56 9.81 84.03 0.82 -10.74 16 8 H 0.06 3.32 7.83 -2.91 -0.02 3.29 16 9 N -0.69 -31.79 4.49 -303.34 -1.36 -33.15 16 10 C 0.10 3.63 2.46 3.61 0.01 3.64 16 11 C 0.16 5.71 5.69 86.38 0.49 6.21 16 12 N -0.70 -25.30 5.39 -463.06 -2.50 -27.80 16 13 C 0.52 18.63 7.35 87.66 0.64 19.28 16 14 O -0.59 -24.86 15.89 -3.03 -0.05 -24.91 16 15 C -0.13 -3.89 4.14 -10.94 -0.05 -3.94 16 16 C -0.07 -1.70 7.66 31.04 0.24 -1.46 16 17 C -0.17 -3.73 3.09 -52.31 -0.16 -3.89 16 18 C -0.16 -2.67 10.53 30.45 0.32 -2.35 16 19 C -0.15 -2.55 10.53 30.46 0.32 -2.23 16 20 C -0.08 -1.97 7.42 30.98 0.23 -1.74 16 21 C -0.16 -4.56 10.11 30.62 0.31 -4.25 16 22 C -0.19 -6.15 10.18 30.62 0.31 -5.84 16 23 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 24 H 0.38 18.56 8.03 -92.71 -0.74 17.82 16 25 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 26 H 0.08 2.42 7.91 -2.39 -0.02 2.40 16 27 H 0.41 15.13 7.79 -92.71 -0.72 14.41 16 28 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 29 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 2.41 7.44 -2.38 -0.02 2.40 16 37 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.12 2.79 8.06 -2.38 -0.02 2.77 16 39 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 40 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -61.93 337.18 1.93 -59.99 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.43 Total: 43.17 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 3.96 Total: -10.09 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -3.58 Total: -115.52 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -61.93 1.93 -59.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277170115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.229 kcal (2) G-P(sol) polarization free energy of solvation -61.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds