Wall clock time and date at job start Mon Mar 30 2020 01:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47198 * 270.00322 * 3 2 1 5 5 H 1.48502 * 109.46914 * 30.00140 * 3 2 1 6 6 H 1.48497 * 109.47345 * 149.99876 * 3 2 1 7 7 C 1.37881 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00165 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47239 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47376 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00115 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99927 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99983 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47247 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47487 * 179.97438 * 16 15 13 18 18 N 1.46494 * 109.47444 * 180.02562 * 17 16 15 19 19 C 1.36345 * 125.63345 * 90.00307 * 18 17 16 20 20 C 1.34850 * 108.21864 * 179.97438 * 19 18 17 21 21 C 1.40894 * 107.41649 * 0.02562 * 20 19 18 22 22 C 1.34846 * 107.41755 * 359.97438 * 21 20 19 23 23 H 0.97002 * 119.99967 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46708 * 60.00158 * 9 7 2 25 25 H 1.08998 * 109.46856 * 300.00296 * 9 7 2 26 26 H 1.09006 * 109.47025 * 59.99684 * 10 9 7 27 27 H 1.09005 * 109.47293 * 300.00633 * 10 9 7 28 28 H 1.09009 * 109.46935 * 60.00001 * 11 10 9 29 29 H 1.08993 * 109.47183 * 300.00166 * 11 10 9 30 30 H 0.96998 * 119.99552 * 359.97438 * 12 11 10 31 31 H 1.09000 * 109.47297 * 59.99935 * 15 13 12 32 32 H 1.08993 * 109.47290 * 299.99929 * 15 13 12 33 33 H 1.09009 * 109.46741 * 60.00270 * 16 15 13 34 34 H 1.08993 * 109.47373 * 300.00436 * 16 15 13 35 35 H 1.09006 * 109.46659 * 59.99927 * 17 16 15 36 36 H 1.09005 * 109.47449 * 300.01004 * 17 16 15 37 37 H 1.08006 * 125.89009 * 359.71336 * 19 18 17 38 38 H 1.08004 * 126.29266 * 180.02562 * 20 19 18 39 39 H 1.07995 * 126.28821 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.89342 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4993 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 6 1.9827 -7.3714 -0.0030 14 8 0.7903 -7.5929 -0.0030 15 6 2.9620 -8.5168 -0.0042 16 6 2.1969 -9.8419 -0.0047 17 6 3.1911 -11.0048 -0.0066 18 7 2.4586 -12.2735 -0.0077 19 6 2.0609 -12.9601 -1.1164 20 6 1.4182 -14.0752 -0.7138 21 6 1.4186 -14.0767 0.6951 22 6 2.0620 -12.9629 1.0998 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8718 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.8537 -5.0446 -0.8915 29 1 0.8531 -5.0451 0.8885 30 1 3.3857 -5.9235 -0.0021 31 1 3.5888 -8.4600 0.8858 32 1 3.5885 -8.4583 -0.8941 33 1 1.5699 -9.8990 -0.8945 34 1 1.5707 -9.9002 0.8854 35 1 3.8185 -10.9478 0.8830 36 1 3.8171 -10.9463 -0.8970 37 1 2.2277 -12.6603 -2.1406 38 1 0.9831 -14.8286 -1.3538 39 1 0.9836 -14.8313 1.3336 40 1 2.2338 -12.6678 2.1244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464982641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:52 Heat of formation + Delta-G solvation = -36.553640 kcal Electronic energy + Delta-G solvation = -18385.803078 eV Core-core repulsion = 15392.544454 eV Total energy + Delta-G solvation = -2993.258624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.94242 -40.73916 -37.08004 -35.86471 -35.19396 -33.16094 -32.10646 -29.61646 -28.96426 -27.28387 -24.96984 -23.15213 -22.32417 -21.32527 -21.09514 -20.77653 -18.64104 -18.45333 -17.57816 -17.07239 -16.79277 -16.41224 -16.16477 -15.50291 -15.19325 -14.85572 -14.45632 -14.28141 -14.07891 -13.78872 -13.60056 -13.25590 -12.98312 -12.92098 -12.79522 -12.69319 -12.59343 -12.55571 -12.37701 -11.79633 -11.68629 -11.60540 -11.25765 -10.84955 -10.56917 -10.09385 -9.48245 -9.02789 -8.20747 -6.32566 1.40476 1.41253 1.42638 1.53613 1.66314 2.06627 2.17389 2.34245 2.43245 3.12974 3.70522 3.81832 3.93076 4.14810 4.18788 4.26553 4.32220 4.39328 4.42372 4.53447 4.55881 4.68858 4.73963 4.81013 4.92297 5.01017 5.02295 5.15636 5.23300 5.42216 5.44972 5.46711 5.52478 5.68725 5.82678 6.12286 6.20436 6.37034 6.57869 6.61566 6.85360 7.30545 7.37291 8.91365 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.073365 B = 0.002213 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.563104 B =12650.099854 C =12810.055560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.715 5.715 13 C 0.499 3.501 14 O -0.599 6.599 15 C -0.123 4.123 16 C -0.114 4.114 17 C 0.107 3.893 18 N -0.451 5.451 19 C -0.025 4.025 20 C -0.229 4.229 21 C -0.229 4.229 22 C -0.025 4.025 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.418 0.582 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.178 0.822 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 -24.146 -0.011 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.004 3.996 12 N -0.368 5.368 13 C 0.288 3.712 14 O -0.480 6.480 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.014 4.014 18 N -0.126 5.126 19 C -0.155 4.155 20 C -0.254 4.254 21 C -0.254 4.254 22 C -0.155 4.155 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.009 0.991 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.256 0.744 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.195 0.805 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 11.703 -23.854 -0.006 26.570 hybrid contribution -0.248 1.132 -0.011 1.159 sum 11.455 -22.722 -0.017 25.446 Atomic orbital electron populations 1.70118 1.08003 1.27807 1.51689 1.26067 0.95775 1.03702 0.94808 0.85387 0.78683 0.78145 0.78458 1.19815 1.21132 1.18286 1.21688 0.93801 0.91936 1.50417 0.91357 1.18963 0.94528 0.93211 0.94921 1.21584 0.98344 0.91673 1.02238 1.21186 0.92167 0.86019 1.00270 1.46016 1.11177 1.05130 1.74434 1.21595 0.89939 0.85038 0.74666 1.90712 1.19864 1.85558 1.51915 1.21600 0.97249 0.89548 1.07933 1.21593 0.98020 0.93032 1.02602 1.22071 0.93407 0.79125 1.06790 1.44375 1.43716 1.18659 1.05831 1.22237 1.05286 0.95376 0.92645 1.21194 1.07894 1.00671 0.95637 1.21192 1.07906 1.00676 0.95625 1.22235 1.05264 0.95364 0.92674 0.92829 0.99150 0.99148 0.91201 0.91193 0.93700 0.93691 0.74430 0.85145 0.85140 0.92914 0.92903 0.86710 0.86718 0.80464 0.84274 0.84276 0.80461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.54 -29.87 9.11 25.60 0.23 -29.63 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 11 C 0.13 4.41 5.67 86.38 0.49 4.90 16 12 N -0.72 -17.56 5.56 -463.06 -2.57 -20.14 16 13 C 0.50 12.59 7.83 87.66 0.69 13.27 16 14 O -0.60 -22.03 15.98 -3.05 -0.05 -22.08 16 15 C -0.12 -1.49 5.70 29.85 0.17 -1.32 16 16 C -0.11 -1.77 4.83 30.59 0.15 -1.62 16 17 C 0.11 1.03 6.09 86.38 0.53 1.56 16 18 N -0.45 -7.38 2.75 -524.48 -1.44 -8.82 16 19 C -0.03 -0.45 11.43 83.21 0.95 0.50 16 20 C -0.23 -4.56 10.86 22.14 0.24 -4.32 16 21 C -0.23 -4.56 10.86 22.14 0.24 -4.32 16 22 C -0.03 -0.45 11.43 83.21 0.95 0.50 16 23 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 24 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 27 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.42 6.94 8.47 -92.71 -0.79 6.16 16 31 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 1.09 8.10 -2.38 -0.02 1.07 16 34 H 0.05 1.09 8.10 -2.39 -0.02 1.08 16 35 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -77.34 342.32 3.87 -73.46 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.22 Total: 11.70 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 5.41 Total: -22.68 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -3.73 Total: -85.83 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -77.34 3.87 -73.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464982641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.908 kcal (2) G-P(sol) polarization free energy of solvation -77.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds